Wall clock time and date at job start Tue Mar 31 2020 20:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00477 * 2 1 4 4 C 1.52996 * 109.47046 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46912 * 178.14202 * 4 3 2 6 6 C 1.36745 * 127.13784 * 90.67017 * 5 4 3 7 7 C 1.50697 * 126.34487 * 0.02562 * 6 5 4 8 8 C 1.52991 * 109.47141 * 89.99830 * 7 6 5 9 9 C 1.50707 * 109.47135 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99749 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99782 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00256 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99707 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47374 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47346 * 300.00119 * 13 11 9 16 16 H 1.48503 * 109.47060 * 59.99697 * 13 11 9 17 17 N 1.30294 * 107.30474 * 180.26516 * 6 5 4 18 18 N 1.28528 * 110.05367 * 359.56222 * 17 6 5 19 19 C 1.31219 * 109.86150 * 0.44773 * 18 17 6 20 20 N 1.38584 * 126.47457 * 179.72716 * 19 18 17 21 21 C 1.46893 * 110.99942 * 297.55681 * 20 19 18 22 22 C 1.46901 * 110.99424 * 61.50683 * 20 19 18 23 23 C 1.53003 * 109.46626 * 169.99881 * 22 20 19 24 24 H 1.08995 * 110.45766 * 54.30417 * 23 22 20 25 25 C 1.54513 * 110.50777 * 176.90535 * 23 22 20 26 26 C 1.54477 * 104.06004 * 118.64597 * 25 23 22 27 27 O 1.44428 * 104.80689 * 23.97914 * 26 25 23 28 28 C 1.44641 * 105.36551 * 319.56428 * 27 26 25 29 29 H 1.08993 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46855 * 299.99894 * 1 2 3 31 31 H 1.08998 * 109.47007 * 59.99843 * 1 2 3 32 32 H 1.09002 * 109.46688 * 59.99962 * 3 2 1 33 33 H 1.08999 * 109.46819 * 300.00320 * 3 2 1 34 34 H 1.09001 * 109.47044 * 58.14466 * 4 3 2 35 35 H 1.08995 * 109.47135 * 298.14179 * 4 3 2 36 36 H 1.09001 * 109.46904 * 329.99810 * 7 6 5 37 37 H 1.08997 * 109.47193 * 210.00070 * 7 6 5 38 38 H 1.08993 * 109.47471 * 59.99919 * 8 7 6 39 39 H 1.09001 * 109.47457 * 299.99469 * 8 7 6 40 40 H 0.96995 * 119.99931 * 0.02562 * 12 11 9 41 41 H 1.08997 * 109.47578 * 66.06119 * 21 20 19 42 42 H 1.09003 * 109.46927 * 186.05757 * 21 20 19 43 43 H 1.09003 * 109.47558 * 306.05176 * 21 20 19 44 44 H 1.08995 * 109.47223 * 289.99933 * 22 20 19 45 45 H 1.08995 * 109.47204 * 50.00210 * 22 20 19 46 46 H 1.09000 * 110.50671 * 237.28655 * 25 23 22 47 47 H 1.08994 * 110.51471 * 359.86568 * 25 23 22 48 48 H 1.09006 * 110.37316 * 142.80533 * 26 25 23 49 49 H 1.08999 * 110.37300 * 265.14344 * 26 25 23 50 50 H 1.09004 * 110.34510 * 281.59280 * 28 27 26 51 51 H 1.08998 * 110.50803 * 159.18859 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5221 -0.0454 6 6 4.4821 3.3057 1.0189 7 6 4.3280 2.9539 2.4761 8 6 5.5937 2.2482 2.9669 9 6 5.4399 1.8969 4.4244 10 1 4.5305 2.1519 4.9482 11 6 6.4605 1.2509 5.0892 12 7 7.5681 0.9409 4.4514 13 14 6.2702 0.8162 6.8959 14 1 7.4986 0.1311 7.3723 15 1 6.0574 2.0567 7.6839 16 1 5.1028 -0.0856 7.0677 17 7 4.9693 4.4150 0.5396 18 7 4.9589 4.3821 -0.7452 19 6 4.4516 3.2445 -1.1579 20 7 4.2742 2.8511 -2.4749 21 6 3.3413 3.7472 -3.1709 22 6 5.5607 2.7793 -3.1805 23 6 5.3592 2.1093 -4.5411 24 1 4.5811 2.6218 -5.1067 25 6 6.6836 2.0908 -5.3368 26 6 6.9757 0.5882 -5.5445 27 8 5.6865 -0.0554 -5.4463 28 6 5.0043 0.6165 -4.3622 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8545 0.6152 -0.8738 35 1 3.8597 0.6724 0.9053 36 1 3.4711 2.2920 2.6014 37 1 4.1718 3.8640 3.0551 38 1 6.4505 2.9101 2.8416 39 1 5.7499 1.3380 2.3880 40 1 7.6670 1.1670 3.5134 41 1 3.7845 4.7395 -3.2544 42 1 3.1367 3.3557 -4.1674 43 1 2.4104 3.8112 -2.6076 44 1 5.9521 3.7861 -3.3256 45 1 6.2672 2.1965 -2.5896 46 1 6.5594 2.5920 -6.2968 47 1 7.4813 2.5611 -4.7619 48 1 7.4102 0.4187 -6.5298 49 1 7.6438 0.2203 -4.7659 50 1 5.3687 0.2524 -3.4016 51 1 3.9270 0.4706 -4.4403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341350428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:57 Heat of formation + Delta-G solvation = -35.200813 kcal Electronic energy + Delta-G solvation = -30634.739667 eV Core-core repulsion = 26569.855216 eV Total energy + Delta-G solvation = -4064.884451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.21053 -40.62948 -39.13170 -38.52516 -36.71027 -36.04124 -34.03153 -33.30140 -31.01217 -30.57065 -29.98225 -27.99184 -27.36694 -26.86758 -25.81831 -24.74681 -23.95996 -23.64460 -21.99271 -21.63375 -21.11170 -19.00225 -18.61822 -17.89929 -17.71208 -17.20367 -17.00926 -16.80988 -16.67930 -16.31859 -16.04797 -15.85043 -15.63562 -15.43546 -15.42097 -15.09993 -14.60185 -14.32873 -14.11613 -13.78855 -13.67326 -13.48729 -13.09552 -13.03132 -12.80304 -12.76465 -12.66968 -12.57917 -12.35846 -12.32660 -12.22820 -12.16148 -12.07229 -11.90617 -11.67708 -11.48757 -11.30540 -10.83147 -10.80349 -10.78489 -10.56087 -10.10964 -10.01402 -8.70290 -6.42297 0.50883 0.96532 1.55179 1.59640 1.63783 1.82385 2.33660 2.57536 2.85055 3.02907 3.15606 3.31064 3.46455 3.52512 3.69888 3.73770 3.81115 3.87097 3.97026 4.06888 4.09627 4.19729 4.22813 4.32997 4.34324 4.41626 4.42437 4.49267 4.50651 4.53379 4.54687 4.59491 4.64375 4.69656 4.79266 4.79997 4.82285 4.85786 4.91707 4.96170 5.04286 5.14992 5.18500 5.31473 5.38217 5.51644 5.82287 5.90412 5.97697 6.06765 6.15198 6.51049 7.40769 7.52514 8.69854 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.003081 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.085342 B = 9086.337804 C = 9904.969514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.066 3.934 4 C 0.113 3.887 5 N -0.457 5.457 6 C 0.203 3.797 7 C -0.009 4.009 8 C 0.028 3.972 9 C -0.615 4.615 10 H 0.064 0.936 11 C -0.037 4.037 12 N -0.936 5.936 13 Si 1.119 2.881 14 H -0.287 1.287 15 H -0.268 1.268 16 H -0.263 1.263 17 N -0.326 5.326 18 N -0.338 5.338 19 C 0.344 3.656 20 N -0.457 5.457 21 C 0.032 3.968 22 C 0.078 3.922 23 C -0.106 4.106 24 H 0.108 0.892 25 C -0.147 4.147 26 C 0.038 3.962 27 O -0.400 6.400 28 C 0.058 3.942 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.092 0.908 38 H -0.018 1.018 39 H -0.010 1.010 40 H 0.252 0.748 41 H 0.040 0.960 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.107 0.893 49 H 0.054 0.946 50 H 0.047 0.953 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 -0.254 -20.991 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.012 4.012 4 C -0.009 4.009 5 N -0.151 5.151 6 C -0.066 4.066 7 C -0.049 4.049 8 C -0.011 4.011 9 C -0.653 4.653 10 H 0.082 0.918 11 C -0.235 4.235 12 N -0.574 5.574 13 Si 0.939 3.061 14 H -0.213 1.213 15 H -0.193 1.193 16 H -0.188 1.188 17 N -0.165 5.165 18 N -0.182 5.182 19 C -0.012 4.012 20 N -0.183 5.183 21 C -0.114 4.114 22 C -0.049 4.049 23 C -0.125 4.125 24 H 0.126 0.874 25 C -0.185 4.185 26 C -0.038 4.038 27 O -0.319 6.319 28 C -0.019 4.019 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.000 1.000 39 H 0.008 0.992 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.099 0.901 48 H 0.125 0.875 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.899 -0.405 -19.921 23.207 hybrid contribution -0.534 0.684 -0.977 1.307 sum -12.432 0.280 -20.898 24.318 Atomic orbital electron populations 1.22999 0.78419 1.04393 1.01087 1.87801 1.22264 1.26474 1.95641 1.22502 0.91288 0.85808 1.01569 1.21658 0.93553 0.79345 1.06388 1.46241 1.46747 1.16482 1.05591 1.25330 0.99486 0.88501 0.93261 1.20013 1.00096 1.01943 0.82864 1.18996 0.92512 0.93357 0.96186 1.22382 1.04970 1.41837 0.96094 0.91784 1.27475 0.92028 0.93580 1.10390 1.70926 1.28165 1.46593 1.11670 0.82928 0.76478 0.77403 0.69292 1.21303 1.19316 1.18809 1.73988 1.19997 1.20024 1.02503 1.74450 1.20618 1.18576 1.04532 1.22590 1.00991 0.88671 0.88992 1.58897 1.14169 1.50703 0.94539 1.22592 0.94483 0.94196 1.00130 1.22264 0.87857 1.00622 0.94119 1.22527 0.99463 0.96542 0.93935 0.87359 1.22976 0.96691 0.97149 1.01658 1.23562 0.85790 0.91497 1.02976 1.89130 1.29240 1.59667 1.53898 1.23468 0.98676 0.90148 0.89601 0.87765 0.93393 0.92491 0.92913 0.91368 0.86360 0.88852 0.88940 0.88966 0.99996 0.99214 0.93897 0.94132 0.86632 0.91314 0.92640 0.92279 0.88494 0.90114 0.87483 0.92770 0.93437 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.65 16 2 O -0.40 -9.13 10.70 -148.98 -1.59 -10.73 16 3 C 0.07 1.49 6.26 71.98 0.45 1.94 16 4 C 0.11 3.06 6.27 86.38 0.54 3.60 16 5 N -0.46 -14.84 2.81 -514.85 -1.45 -16.29 16 6 C 0.20 7.96 7.32 137.64 1.01 8.96 16 7 C -0.01 -0.39 5.35 29.84 0.16 -0.23 16 8 C 0.03 1.44 4.27 29.85 0.13 1.57 16 9 C -0.62 -34.15 9.11 25.60 0.23 -33.92 16 10 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 11 C -0.04 -2.14 5.46 84.66 0.46 -1.68 16 12 N -0.94 -58.47 13.65 21.45 0.29 -58.17 16 13 Si 1.12 49.31 29.90 68.60 2.05 51.36 16 14 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 17 N -0.33 -13.93 12.18 -49.54 -0.60 -14.53 16 18 N -0.34 -12.88 12.19 -58.00 -0.71 -13.58 16 19 C 0.34 10.70 6.38 260.11 1.66 12.36 16 20 N -0.46 -10.08 4.62 -730.94 -3.38 -13.46 16 21 C 0.03 0.54 9.23 127.69 1.18 1.72 16 22 C 0.08 1.60 4.02 86.30 0.35 1.95 16 23 C -0.11 -1.56 3.04 -9.77 -0.03 -1.59 16 24 H 0.11 1.22 6.42 -2.39 -0.02 1.20 16 25 C -0.15 -1.92 6.74 31.61 0.21 -1.71 16 26 C 0.04 0.60 7.64 72.48 0.55 1.15 16 27 O -0.40 -8.30 11.65 -148.98 -1.74 -10.04 16 28 C 0.06 1.02 7.06 72.49 0.51 1.54 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.09 2.87 7.84 -2.39 -0.02 2.85 16 36 H 0.09 3.36 7.90 -2.39 -0.02 3.34 16 37 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 38 H -0.02 -1.07 8.01 -2.39 -0.02 -1.09 16 39 H -0.01 -0.57 8.01 -2.39 -0.02 -0.59 16 40 H 0.25 16.13 7.22 -92.71 -0.67 15.46 16 41 H 0.04 0.76 8.12 -2.39 -0.02 0.74 16 42 H 0.12 1.17 6.47 -2.39 -0.02 1.15 16 43 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 44 H 0.06 1.20 8.11 -2.39 -0.02 1.18 16 45 H 0.06 1.46 7.93 -2.39 -0.02 1.44 16 46 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 1.08 7.73 -2.39 -0.02 1.06 16 48 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.05 0.98 7.78 -2.38 -0.02 0.96 16 51 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -74.33 415.12 2.54 -71.79 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.99 Total: 16.34 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 8.66 Total: -2.68 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -5.84 Total: -116.04 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -3.33 Total: -20.77 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal Total: -74.33 2.54 -71.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341350428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.591 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds