Wall clock time and date at job start Tue Mar 31 2020 20:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99705 * 2 1 4 4 C 1.53003 * 109.46947 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47121 * 65.00376 * 4 3 2 6 6 C 1.42891 * 114.00615 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.50235 * 329.91649 * 6 5 4 8 8 C 1.53117 * 109.50933 * 89.99358 * 6 5 4 9 9 C 1.53117 * 109.16593 * 177.59717 * 8 6 5 10 10 C 1.53035 * 109.27925 * 302.35151 * 9 8 6 11 11 N 1.46850 * 109.52541 * 59.17613 * 10 9 8 12 12 C 1.38578 * 111.00131 * 174.16311 * 11 10 9 13 13 N 1.31224 * 126.47102 * 36.37562 * 12 11 10 14 14 N 1.28531 * 109.85883 * 179.97438 * 13 12 11 15 15 C 1.30299 * 110.04952 * 359.97438 * 14 13 12 16 16 C 1.50708 * 126.34172 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46881 * 90.02540 * 16 15 14 18 18 C 1.50695 * 109.46700 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00539 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99795 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99951 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99876 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46996 * 60.00417 * 22 20 18 24 24 H 1.48499 * 109.46896 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47253 * 300.00078 * 22 20 18 26 26 N 1.36447 * 126.47289 * 216.06167 * 12 11 10 27 27 C 1.46500 * 127.13618 * 0.04011 * 26 12 11 28 28 C 1.46849 * 111.19585 * 298.25775 * 11 10 9 29 29 H 1.08997 * 109.47037 * 59.99794 * 1 2 3 30 30 H 1.09002 * 109.46723 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46878 * 299.99982 * 1 2 3 32 32 H 1.09000 * 109.47468 * 60.00034 * 3 2 1 33 33 H 1.08998 * 109.47617 * 299.99591 * 3 2 1 34 34 H 1.08994 * 109.47580 * 305.00669 * 4 3 2 35 35 H 1.08999 * 109.47606 * 184.99597 * 4 3 2 36 36 H 1.09003 * 109.52541 * 297.50963 * 8 6 5 37 37 H 1.09006 * 109.51753 * 57.69191 * 8 6 5 38 38 H 1.09007 * 109.50119 * 62.28696 * 9 8 6 39 39 H 1.08992 * 109.50510 * 182.40832 * 9 8 6 40 40 H 1.08996 * 109.46301 * 179.19468 * 10 9 8 41 41 H 1.09003 * 109.45867 * 299.16952 * 10 9 8 42 42 H 1.08997 * 109.46536 * 210.02113 * 16 15 14 43 43 H 1.08998 * 109.47403 * 330.02416 * 16 15 14 44 44 H 1.09003 * 109.46861 * 299.99459 * 17 16 15 45 45 H 1.08998 * 109.47203 * 59.99754 * 17 16 15 46 46 H 0.96997 * 120.00106 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.47627 * 95.46591 * 27 26 12 48 48 H 1.09003 * 109.46639 * 215.46632 * 27 26 12 49 49 H 1.08997 * 109.47159 * 335.46054 * 27 26 12 50 50 H 1.08999 * 109.46790 * 301.73016 * 28 11 10 51 51 H 1.09000 * 109.46381 * 181.75690 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5793 -1.2202 6 6 5.3821 0.4187 -1.3217 7 1 5.8792 1.2109 -0.7619 8 6 5.7848 -0.9426 -0.7481 9 6 7.2950 -1.1317 -0.9153 10 6 7.6579 -1.0143 -2.3973 11 7 7.2533 0.3054 -2.8986 12 6 7.6839 0.4949 -4.2021 13 7 7.7430 -0.4165 -5.1444 14 7 8.1890 0.1066 -6.2304 15 6 8.4382 1.3723 -6.0471 16 6 8.9732 2.3353 -7.0755 17 6 7.8061 2.9848 -7.8217 18 6 8.3410 3.9482 -8.8497 19 1 9.4068 4.0840 -8.9595 20 6 7.4698 4.6564 -9.6501 21 7 6.1719 4.4914 -9.5160 22 14 8.1329 5.8511 -10.9238 23 1 8.9922 5.1193 -11.8887 24 1 7.0001 6.4805 -11.6490 25 1 8.9333 6.9027 -10.2467 26 7 8.1208 1.6657 -4.7498 27 6 8.2299 2.9667 -4.0851 28 6 5.8005 0.4912 -2.7920 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8508 0.5685 0.8426 35 1 3.9785 2.1765 0.0901 36 1 5.5277 -0.9824 0.3105 37 1 5.2574 -1.7332 -1.2819 38 1 7.8228 -0.3639 -0.3495 39 1 7.5813 -2.1170 -0.5475 40 1 8.7345 -1.1342 -2.5182 41 1 7.1405 -1.7909 -2.9605 42 1 9.5616 3.1070 -6.5792 43 1 9.6031 1.7974 -7.7840 44 1 7.2176 2.2131 -8.3181 45 1 7.1761 3.5227 -7.1133 46 1 5.5590 4.9893 -10.0793 47 1 9.2478 3.1041 -3.7203 48 1 7.9881 3.7584 -4.7943 49 1 7.5350 3.0055 -3.2463 50 1 5.2919 -0.2926 -3.3533 51 1 5.5280 1.4647 -3.1995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341698490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:04 Heat of formation + Delta-G solvation = -14.641813 kcal Electronic energy + Delta-G solvation = -29767.281477 eV Core-core repulsion = 25703.288532 eV Total energy + Delta-G solvation = -4063.992946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.59647 -39.71692 -38.35139 -37.10764 -34.81220 -34.12219 -33.16745 -31.52264 -31.29407 -29.48407 -28.38709 -27.29354 -26.58250 -25.35805 -24.64152 -23.20149 -22.83620 -21.85516 -21.13777 -20.14755 -19.66199 -17.73156 -17.02125 -16.84121 -16.48082 -16.24339 -15.97993 -15.70579 -15.44034 -15.13281 -14.87872 -14.56507 -14.46618 -14.27940 -13.61619 -13.44476 -13.35803 -13.14440 -13.03686 -12.93508 -12.58179 -12.50208 -12.24836 -11.98357 -11.61915 -11.36938 -11.33445 -11.23608 -11.10292 -11.03911 -10.96820 -10.88594 -10.71133 -10.35402 -10.03386 -9.98351 -9.87891 -9.76216 -9.72253 -9.25269 -9.01166 -8.41481 -8.22478 -6.05841 -4.10255 2.05216 2.48203 3.13318 3.30496 3.34351 3.35640 3.38002 3.42195 3.89900 4.40638 4.44257 4.50899 4.67573 4.71614 4.78024 4.88236 4.90719 4.94728 4.97525 5.02753 5.05220 5.10082 5.17811 5.25079 5.27623 5.29767 5.30548 5.36244 5.38900 5.43664 5.56546 5.58190 5.61394 5.68541 5.74707 5.77661 5.91311 6.07306 6.27638 6.33311 6.45675 6.58364 6.68101 6.78154 6.94070 6.99405 7.44481 7.54234 7.68300 7.91333 8.28715 8.95708 9.17007 9.54339 11.05198 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.002418 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.723154 B =11574.688277 C =13335.590250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.065 3.935 5 O -0.371 6.371 6 C 0.098 3.902 7 H 0.070 0.930 8 C -0.143 4.143 9 C -0.113 4.113 10 C 0.068 3.932 11 N -0.454 5.454 12 C 0.323 3.677 13 N -0.313 5.313 14 N -0.297 5.297 15 C 0.217 3.783 16 C -0.032 4.032 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.895 3.105 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 N -0.470 5.470 27 C 0.081 3.919 28 C 0.065 3.935 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.025 0.975 45 H 0.014 0.986 46 H 0.262 0.738 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.059 0.941 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -5.759 25.531 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.011 4.011 5 O -0.290 6.290 6 C 0.040 3.960 7 H 0.088 0.912 8 C -0.181 4.181 9 C -0.151 4.151 10 C -0.059 4.059 11 N -0.181 5.181 12 C -0.034 4.034 13 N -0.157 5.157 14 N -0.137 5.137 15 C -0.051 4.051 16 C -0.072 4.072 17 C -0.006 4.006 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.723 3.277 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 N -0.163 5.163 27 C -0.063 4.063 28 C -0.062 4.062 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.044 0.956 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.078 0.922 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.393 -6.896 24.953 26.259 hybrid contribution -0.161 1.812 -0.222 1.833 sum -4.554 -5.084 24.731 25.656 Atomic orbital electron populations 1.22752 0.81031 1.02889 0.99912 1.87960 1.19622 1.27264 1.95381 1.22575 0.92364 0.85575 1.00990 1.22560 0.93342 0.97401 0.87842 1.87968 1.21379 1.81736 1.37882 1.21950 0.81383 0.97138 0.95553 0.91190 1.22110 0.96285 0.98089 1.01567 1.21580 0.95508 1.02599 0.95446 1.22093 1.01530 0.87254 0.94987 1.58399 1.13637 1.33041 1.13009 1.22052 1.04967 0.84551 0.91784 1.74500 1.19068 1.25976 0.96163 1.74044 1.17172 1.05446 1.16988 1.25640 1.00560 0.94953 0.83898 1.20462 1.00626 0.93558 0.92522 1.19067 0.91652 0.95356 0.94547 1.21101 0.93071 1.23448 1.18703 0.92305 1.25019 0.94812 0.97091 0.97345 1.69962 1.01598 1.41809 1.39707 0.86608 0.78400 0.81122 0.81591 1.20067 1.21292 1.20206 1.46150 1.48967 1.09996 1.11152 1.22010 1.03418 0.82016 0.98807 1.22083 0.85031 1.03217 0.95902 0.93892 0.89568 0.94238 0.91840 0.92193 0.92391 0.91629 0.91356 0.90760 0.90943 0.90307 0.90048 0.92303 0.91113 0.89196 0.95613 0.96810 0.92791 0.90447 0.88596 0.89437 0.92240 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.94 10.67 -40.08 -0.43 -4.37 16 3 C 0.06 0.50 6.32 37.16 0.23 0.73 16 4 C 0.07 0.54 6.13 37.16 0.23 0.77 16 5 O -0.37 -4.24 9.96 -40.08 -0.40 -4.64 16 6 C 0.10 1.00 2.77 -26.65 -0.07 0.93 16 7 H 0.07 0.62 7.79 -51.92 -0.40 0.22 16 8 C -0.14 -1.28 5.62 -26.61 -0.15 -1.43 16 9 C -0.11 -0.95 6.09 -26.65 -0.16 -1.11 16 10 C 0.07 0.79 5.09 -3.83 -0.02 0.77 16 11 N -0.45 -6.06 4.64 -174.55 -0.81 -6.87 16 12 C 0.32 5.54 6.71 -318.88 -2.14 3.40 16 13 N -0.31 -6.36 11.70 30.31 0.35 -6.00 16 14 N -0.30 -6.57 12.18 32.99 0.40 -6.17 16 15 C 0.22 4.37 7.32 -154.01 -1.13 3.24 16 16 C -0.03 -0.65 5.47 -27.88 -0.15 -0.80 16 17 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 18 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 22 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 N -0.47 -8.03 3.21 -121.46 -0.39 -8.42 16 27 C 0.08 1.02 10.88 59.85 0.65 1.68 16 28 C 0.07 0.84 5.05 -3.83 -0.02 0.82 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.44 7.93 -51.93 -0.41 0.02 16 35 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 41 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 42 H 0.07 1.28 7.98 -51.93 -0.41 0.86 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 49 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 416.54 15.07 6.28 6.28 Total: -1.00 -34.35 416.54 -10.64 -45.00 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -9.20 Total: -3.11 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.17 Total: -2.05 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.29 Total: -53.24 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.83 Total: -9.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.35 -10.64 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341698490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.354 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds