Wall clock time and date at job start Tue Mar 31 2020 20:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99705 * 2 1 4 4 C 1.53003 * 109.46947 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47121 * 65.00376 * 4 3 2 6 6 C 1.42891 * 114.00615 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.50235 * 329.91649 * 6 5 4 8 8 C 1.53117 * 109.50933 * 89.99358 * 6 5 4 9 9 C 1.53117 * 109.16593 * 177.59717 * 8 6 5 10 10 C 1.53035 * 109.27925 * 302.35151 * 9 8 6 11 11 N 1.46850 * 109.52541 * 59.17613 * 10 9 8 12 12 C 1.38578 * 111.00131 * 174.16311 * 11 10 9 13 13 N 1.31224 * 126.47102 * 36.37562 * 12 11 10 14 14 N 1.28531 * 109.85883 * 179.97438 * 13 12 11 15 15 C 1.30299 * 110.04952 * 359.97438 * 14 13 12 16 16 C 1.50708 * 126.34172 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46881 * 90.02540 * 16 15 14 18 18 C 1.50695 * 109.46700 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00539 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99795 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99951 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99876 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46996 * 60.00417 * 22 20 18 24 24 H 1.48499 * 109.46896 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47253 * 300.00078 * 22 20 18 26 26 N 1.36447 * 126.47289 * 216.06167 * 12 11 10 27 27 C 1.46500 * 127.13618 * 0.04011 * 26 12 11 28 28 C 1.46849 * 111.19585 * 298.25775 * 11 10 9 29 29 H 1.08997 * 109.47037 * 59.99794 * 1 2 3 30 30 H 1.09002 * 109.46723 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46878 * 299.99982 * 1 2 3 32 32 H 1.09000 * 109.47468 * 60.00034 * 3 2 1 33 33 H 1.08998 * 109.47617 * 299.99591 * 3 2 1 34 34 H 1.08994 * 109.47580 * 305.00669 * 4 3 2 35 35 H 1.08999 * 109.47606 * 184.99597 * 4 3 2 36 36 H 1.09003 * 109.52541 * 297.50963 * 8 6 5 37 37 H 1.09006 * 109.51753 * 57.69191 * 8 6 5 38 38 H 1.09007 * 109.50119 * 62.28696 * 9 8 6 39 39 H 1.08992 * 109.50510 * 182.40832 * 9 8 6 40 40 H 1.08996 * 109.46301 * 179.19468 * 10 9 8 41 41 H 1.09003 * 109.45867 * 299.16952 * 10 9 8 42 42 H 1.08997 * 109.46536 * 210.02113 * 16 15 14 43 43 H 1.08998 * 109.47403 * 330.02416 * 16 15 14 44 44 H 1.09003 * 109.46861 * 299.99459 * 17 16 15 45 45 H 1.08998 * 109.47203 * 59.99754 * 17 16 15 46 46 H 0.96997 * 120.00106 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.47627 * 95.46591 * 27 26 12 48 48 H 1.09003 * 109.46639 * 215.46632 * 27 26 12 49 49 H 1.08997 * 109.47159 * 335.46054 * 27 26 12 50 50 H 1.08999 * 109.46790 * 301.73016 * 28 11 10 51 51 H 1.09000 * 109.46381 * 181.75690 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5793 -1.2202 6 6 5.3821 0.4187 -1.3217 7 1 5.8792 1.2109 -0.7619 8 6 5.7848 -0.9426 -0.7481 9 6 7.2950 -1.1317 -0.9153 10 6 7.6579 -1.0143 -2.3973 11 7 7.2533 0.3054 -2.8986 12 6 7.6839 0.4949 -4.2021 13 7 7.7430 -0.4165 -5.1444 14 7 8.1890 0.1066 -6.2304 15 6 8.4382 1.3723 -6.0471 16 6 8.9732 2.3353 -7.0755 17 6 7.8061 2.9848 -7.8217 18 6 8.3410 3.9482 -8.8497 19 1 9.4068 4.0840 -8.9595 20 6 7.4698 4.6564 -9.6501 21 7 6.1719 4.4914 -9.5160 22 14 8.1329 5.8511 -10.9238 23 1 8.9922 5.1193 -11.8887 24 1 7.0001 6.4805 -11.6490 25 1 8.9333 6.9027 -10.2467 26 7 8.1208 1.6657 -4.7498 27 6 8.2299 2.9667 -4.0851 28 6 5.8005 0.4912 -2.7920 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8508 0.5685 0.8426 35 1 3.9785 2.1765 0.0901 36 1 5.5277 -0.9824 0.3105 37 1 5.2574 -1.7332 -1.2819 38 1 7.8228 -0.3639 -0.3495 39 1 7.5813 -2.1170 -0.5475 40 1 8.7345 -1.1342 -2.5182 41 1 7.1405 -1.7909 -2.9605 42 1 9.5616 3.1070 -6.5792 43 1 9.6031 1.7974 -7.7840 44 1 7.2176 2.2131 -8.3181 45 1 7.1761 3.5227 -7.1133 46 1 5.5590 4.9893 -10.0793 47 1 9.2478 3.1041 -3.7203 48 1 7.9881 3.7584 -4.7943 49 1 7.5350 3.0055 -3.2463 50 1 5.2919 -0.2926 -3.3533 51 1 5.5280 1.4647 -3.1995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341698490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:03 Heat of formation + Delta-G solvation = -35.524531 kcal Electronic energy + Delta-G solvation = -29768.187020 eV Core-core repulsion = 25703.288532 eV Total energy + Delta-G solvation = -4064.898488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.05741 -40.62154 -39.08588 -37.93774 -36.39368 -35.71025 -34.44907 -33.25011 -32.05083 -30.40782 -29.89344 -28.49192 -27.18115 -27.15571 -25.74895 -24.15519 -23.65861 -23.48422 -22.32183 -21.60810 -20.74328 -18.80793 -18.51487 -17.71629 -17.64648 -17.49788 -17.26218 -16.56559 -16.43024 -16.20114 -15.88850 -15.82186 -15.61727 -15.39381 -14.90367 -14.82298 -14.36723 -14.26979 -14.22190 -13.99431 -13.73862 -13.68587 -13.22826 -13.17056 -12.83529 -12.73836 -12.61764 -12.52489 -12.30158 -12.11823 -12.05499 -11.96954 -11.81105 -11.78788 -11.75251 -11.50195 -11.33115 -11.10178 -10.65429 -10.56941 -10.50352 -10.37183 -9.67772 -8.20335 -6.32949 0.64091 1.20228 1.43511 1.47036 1.54414 1.69203 2.31093 2.42479 2.85698 2.93905 3.13939 3.44257 3.58032 3.67483 3.77884 3.90790 4.02815 4.03995 4.12343 4.15439 4.17661 4.25038 4.34943 4.39463 4.44600 4.45336 4.53403 4.57686 4.59402 4.62831 4.64815 4.65082 4.69192 4.77871 4.80355 4.85089 4.85265 4.90055 5.01366 5.05402 5.10459 5.32824 5.43137 5.46912 5.56688 5.59838 5.78008 6.11717 6.16521 6.17401 6.30529 6.83031 7.37233 7.65453 8.91622 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.002418 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.723154 B =11574.688277 C =13335.590250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.056 3.944 4 C 0.059 3.941 5 O -0.400 6.400 6 C 0.106 3.894 7 H 0.093 0.907 8 C -0.139 4.139 9 C -0.100 4.100 10 C 0.065 3.935 11 N -0.438 5.438 12 C 0.338 3.662 13 N -0.349 5.349 14 N -0.334 5.334 15 C 0.202 3.798 16 C -0.015 4.015 17 C 0.043 3.957 18 C -0.539 4.539 19 H 0.074 0.926 20 C 0.000 4.000 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.259 1.259 26 N -0.466 5.466 27 C 0.073 3.927 28 C 0.068 3.932 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.100 0.900 43 H 0.090 0.910 44 H -0.020 1.020 45 H -0.005 1.005 46 H 0.263 0.737 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.109 0.891 50 H 0.030 0.970 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 -4.295 28.136 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.020 4.020 4 C -0.017 4.017 5 O -0.319 6.319 6 C 0.048 3.952 7 H 0.111 0.889 8 C -0.176 4.176 9 C -0.138 4.138 10 C -0.062 4.062 11 N -0.165 5.165 12 C -0.019 4.019 13 N -0.193 5.193 14 N -0.174 5.174 15 C -0.066 4.066 16 C -0.055 4.055 17 C 0.005 3.995 18 C -0.577 4.577 19 H 0.092 0.908 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.793 3.207 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.184 1.184 26 N -0.159 5.159 27 C -0.068 4.068 28 C -0.060 4.060 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.119 0.881 43 H 0.108 0.892 44 H -0.001 1.001 45 H 0.013 0.987 46 H 0.072 0.928 47 H 0.126 0.874 48 H 0.106 0.894 49 H 0.127 0.873 50 H 0.048 0.952 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.052 -5.423 27.586 28.280 hybrid contribution -0.668 1.323 -0.951 1.761 sum -3.720 -4.099 26.635 27.204 Atomic orbital electron populations 1.22892 0.79807 1.03592 1.00746 1.87911 1.21184 1.28684 1.95587 1.22749 0.92408 0.84995 1.01844 1.22811 0.93479 0.98557 0.86827 1.87942 1.21844 1.82324 1.39790 1.21907 0.81384 0.98691 0.93238 0.88878 1.22088 0.96481 0.96643 1.02435 1.21557 0.95066 1.04488 0.92684 1.22244 1.01216 0.85617 0.97135 1.58702 1.13675 1.33978 1.10155 1.22496 1.02828 0.84046 0.92568 1.74412 1.20796 1.27445 0.96613 1.73930 1.18263 1.06816 1.18384 1.25433 1.01491 0.94523 0.85201 1.20179 0.98687 0.94061 0.92530 1.18835 0.92667 0.93908 0.94139 1.21568 0.93920 1.23331 1.18865 0.90753 1.26019 0.94944 0.99134 0.99715 1.70121 1.03197 1.43199 1.41043 0.85440 0.77757 0.78832 0.78663 1.19283 1.21403 1.18376 1.46344 1.47911 1.11331 1.10290 1.22361 1.05960 0.79557 0.98913 1.22070 0.84307 1.01464 0.98166 0.94069 0.89060 0.92344 0.89056 0.93175 0.91325 0.89419 0.89181 0.92619 0.89120 0.88202 0.90132 0.94328 0.88124 0.89191 1.00139 0.98664 0.92813 0.87440 0.89371 0.87275 0.95154 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.21 10.67 -144.34 -1.54 -9.75 16 3 C 0.06 0.83 6.32 71.98 0.45 1.29 16 4 C 0.06 0.85 6.13 71.98 0.44 1.29 16 5 O -0.40 -8.75 9.96 -144.34 -1.44 -10.19 16 6 C 0.11 1.99 2.77 30.65 0.08 2.07 16 7 H 0.09 1.34 7.79 -2.38 -0.02 1.32 16 8 C -0.14 -2.21 5.62 30.67 0.17 -2.03 16 9 C -0.10 -1.40 6.09 30.65 0.19 -1.21 16 10 C 0.06 1.44 5.09 86.32 0.44 1.88 16 11 N -0.44 -11.37 4.64 -706.15 -3.27 -14.65 16 12 C 0.34 11.70 6.71 260.11 1.74 13.44 16 13 N -0.35 -14.72 11.70 -58.01 -0.68 -15.40 16 14 N -0.33 -15.39 12.18 -49.53 -0.60 -16.00 16 15 C 0.20 8.32 7.32 137.64 1.01 9.33 16 16 C -0.01 -0.61 5.47 29.85 0.16 -0.45 16 17 C 0.04 2.25 4.96 29.85 0.15 2.40 16 18 C -0.54 -29.52 9.11 25.60 0.23 -29.28 16 19 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 20 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 21 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16 22 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 N -0.47 -15.84 3.21 -538.18 -1.73 -17.57 16 27 C 0.07 1.73 10.88 127.77 1.39 3.12 16 28 C 0.07 1.75 5.05 86.33 0.44 2.19 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.83 7.93 -2.39 -0.02 0.82 16 35 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 36 H 0.09 1.10 7.94 -2.39 -0.02 1.08 16 37 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16 41 H 0.04 1.02 8.06 -2.39 -0.02 1.00 16 42 H 0.10 3.49 7.98 -2.39 -0.02 3.47 16 43 H 0.09 3.67 8.14 -2.39 -0.02 3.66 16 44 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 45 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.09 2.26 8.07 -2.39 -0.02 2.24 16 49 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 50 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.07 1.97 8.10 -2.39 -0.02 1.96 16 Total: -1.00 -78.09 416.54 2.55 -75.54 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.88 Total: 13.43 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 8.61 Total: 6.07 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -6.00 Total: -120.34 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -2.98 Total: -19.93 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -78.09 2.55 -75.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341698490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.014 kcal (2) G-P(sol) polarization free energy of solvation -78.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds