Wall clock time and date at job start Tue Mar 31 2020 20:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99970 * 2 1 4 4 C 1.53001 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47387 * 64.99585 * 4 3 2 6 6 C 1.46904 * 110.99353 * 66.04679 * 5 4 3 7 7 C 1.38572 * 111.00026 * 189.99778 * 5 4 3 8 8 N 1.31214 * 126.47853 * 348.45540 * 7 5 4 9 9 N 1.28526 * 109.86503 * 179.81734 * 8 7 5 10 10 C 1.30297 * 110.05152 * 0.45885 * 9 8 7 11 11 C 1.50704 * 126.34525 * 179.76273 * 10 9 8 12 12 C 1.53007 * 109.46997 * 276.65772 * 11 10 9 13 13 C 1.50698 * 109.46807 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00352 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99694 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00145 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46930 * 89.99905 * 17 15 13 19 19 H 1.48501 * 109.46983 * 210.00014 * 17 15 13 20 20 H 1.48503 * 109.46627 * 329.99954 * 17 15 13 21 21 N 1.36456 * 126.47005 * 168.76787 * 7 5 4 22 22 C 1.46497 * 127.13803 * 0.02562 * 21 7 5 23 23 C 1.53010 * 109.47119 * 276.60209 * 22 21 7 24 24 H 1.08997 * 110.74767 * 57.55440 * 23 22 21 25 25 C 1.55303 * 110.84776 * 181.24437 * 23 22 21 26 26 C 1.54948 * 100.94140 * 152.32537 * 25 23 22 27 27 O 1.43653 * 105.13239 * 323.55800 * 26 25 23 28 28 C 1.43232 * 109.97268 * 24.42628 * 27 26 25 29 29 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47377 * 300.00154 * 1 2 3 31 31 H 1.09000 * 109.46658 * 60.00217 * 1 2 3 32 32 H 1.09003 * 109.47404 * 60.00204 * 3 2 1 33 33 H 1.08995 * 109.47369 * 299.99803 * 3 2 1 34 34 H 1.09002 * 109.47062 * 304.99778 * 4 3 2 35 35 H 1.09004 * 109.47209 * 185.00399 * 4 3 2 36 36 H 1.09005 * 109.47196 * 55.47477 * 6 5 4 37 37 H 1.09008 * 109.46958 * 175.47041 * 6 5 4 38 38 H 1.08994 * 109.47220 * 295.47314 * 6 5 4 39 39 H 1.08992 * 109.47169 * 36.66298 * 11 10 9 40 40 H 1.09001 * 109.46666 * 156.66547 * 11 10 9 41 41 H 1.08997 * 109.47131 * 300.00800 * 12 11 10 42 42 H 1.09003 * 109.46393 * 60.00178 * 12 11 10 43 43 H 0.97000 * 120.00199 * 180.02562 * 16 15 13 44 44 H 1.09000 * 109.47484 * 36.60199 * 22 21 7 45 45 H 1.09004 * 109.47450 * 156.60489 * 22 21 7 46 46 H 1.08993 * 111.12746 * 270.24657 * 25 23 22 47 47 H 1.09004 * 111.12519 * 34.40784 * 25 23 22 48 48 H 1.09002 * 110.31071 * 204.64405 * 26 25 23 49 49 H 1.08997 * 110.39330 * 82.51203 * 26 25 23 50 50 H 1.08996 * 109.83242 * 238.77152 * 28 27 26 51 51 H 1.09001 * 109.83112 * 117.80119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5621 -1.2542 6 6 3.6969 1.4346 -2.4022 7 6 5.3228 0.2330 -1.1981 8 7 6.1813 0.6129 -0.2813 9 7 7.3405 0.1203 -0.5376 10 6 7.2929 -0.5892 -1.6294 11 6 8.4430 -1.3254 -2.2669 12 6 9.2521 -0.3566 -3.1317 13 6 10.4018 -1.0929 -3.7697 14 1 10.5412 -2.1465 -3.5780 15 6 11.2757 -0.4214 -4.5982 16 7 11.1062 0.8618 -4.8313 17 14 12.7004 -1.3343 -5.3896 18 1 12.2696 -1.8830 -6.7006 19 1 13.8355 -0.3987 -5.5935 20 1 13.1286 -2.4467 -4.5039 21 7 6.0059 -0.5427 -2.0890 22 6 5.4714 -1.1908 -3.2892 23 6 4.8174 -2.5191 -2.9033 24 1 4.0306 -2.3621 -2.1655 25 6 4.2665 -3.2492 -4.1584 26 6 4.3481 -4.7267 -3.6987 27 8 5.5458 -4.8083 -2.9098 28 6 5.8709 -3.5183 -2.3790 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8507 0.5685 0.8427 35 1 3.9785 2.1765 0.0903 36 1 4.1572 2.4092 -2.2392 37 1 4.1061 0.9865 -3.3078 38 1 2.6192 1.5554 -2.5115 39 1 9.0841 -1.7408 -1.4895 40 1 8.0572 -2.1326 -2.8895 41 1 8.6109 0.0588 -3.9091 42 1 9.6378 0.4507 -2.5091 43 1 11.7207 1.3341 -5.4145 44 1 4.7288 -0.5413 -3.7527 45 1 6.2823 -1.3762 -3.9937 46 1 3.2362 -2.9574 -4.3620 47 1 4.9017 -3.0721 -5.0263 48 1 4.4179 -5.3882 -4.5622 49 1 3.4786 -4.9849 -3.0943 50 1 6.8637 -3.2195 -2.7155 51 1 5.8420 -3.5486 -1.2898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344374162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:45 Heat of formation + Delta-G solvation = -4.216324 kcal Electronic energy + Delta-G solvation = -31043.748654 eV Core-core repulsion = 26980.207792 eV Total energy + Delta-G solvation = -4063.540863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.67910 -39.51191 -38.68522 -37.00816 -35.48567 -34.00934 -32.23523 -31.78785 -30.20845 -29.49717 -28.83886 -26.99982 -26.49670 -25.70397 -24.98183 -22.89415 -22.49582 -21.76826 -21.25254 -20.20209 -19.74525 -17.36297 -16.97453 -16.86873 -16.52089 -16.38464 -16.22866 -15.54740 -15.48751 -15.25357 -14.81688 -14.56282 -14.50452 -14.24685 -13.68084 -13.54607 -13.37492 -13.01506 -12.85269 -12.64934 -12.39664 -12.32425 -12.19045 -11.96606 -11.81164 -11.60258 -11.37980 -11.24604 -11.17472 -11.02300 -10.94829 -10.84259 -10.66496 -10.34769 -10.08866 -9.92814 -9.88840 -9.78952 -9.46261 -9.26733 -9.19535 -8.40786 -7.97502 -6.05355 -4.09384 2.09738 2.43382 3.25774 3.29914 3.36956 3.40904 3.51465 3.65710 3.78066 4.21486 4.41497 4.47003 4.59980 4.67946 4.76523 4.84277 4.89599 5.00601 5.02140 5.03772 5.06212 5.10236 5.13152 5.17995 5.19896 5.28467 5.30942 5.36578 5.39888 5.48294 5.54337 5.55738 5.58946 5.67531 5.70688 5.80056 5.89795 5.98282 6.19055 6.39736 6.43930 6.59796 6.67938 6.90013 6.92545 6.95527 7.41145 7.54819 7.69396 7.92251 8.29480 8.96845 9.19960 9.55399 11.05688 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.003348 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.400048 B = 8360.374406 C = 9956.875210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.064 3.936 4 C 0.074 3.926 5 N -0.445 5.445 6 C 0.018 3.982 7 C 0.335 3.665 8 N -0.324 5.324 9 N -0.292 5.292 10 C 0.214 3.786 11 C -0.036 4.036 12 C 0.033 3.967 13 C -0.524 4.524 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.272 1.272 21 N -0.476 5.476 22 C 0.119 3.881 23 C -0.135 4.135 24 H 0.098 0.902 25 C -0.147 4.147 26 C 0.053 3.947 27 O -0.381 6.381 28 C 0.049 3.951 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.013 0.987 42 H 0.027 0.973 43 H 0.261 0.739 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.084 0.916 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.046 -2.614 3.052 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.013 4.013 4 C -0.054 4.054 5 N -0.169 5.169 6 C -0.129 4.129 7 C -0.021 4.021 8 N -0.168 5.168 9 N -0.130 5.130 10 C -0.053 4.053 11 C -0.075 4.075 12 C -0.005 4.005 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 N -0.170 5.170 22 C -0.004 4.004 23 C -0.154 4.154 24 H 0.117 0.883 25 C -0.186 4.186 26 C -0.024 4.024 27 O -0.301 6.301 28 C -0.027 4.027 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.102 0.898 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.470 -2.554 4.184 23.977 hybrid contribution 0.149 0.219 -1.630 1.652 sum -23.322 -2.335 2.553 23.577 Atomic orbital electron populations 1.22724 0.81601 1.02658 0.99624 1.88024 1.18968 1.27161 1.95266 1.22640 0.92936 0.85349 1.00387 1.22089 0.92826 0.99670 0.90773 1.58592 1.08756 1.43807 1.05763 1.22646 1.02551 0.95103 0.92599 1.22370 0.90691 0.97489 0.91595 1.74518 0.96331 1.22271 1.23683 1.74007 1.13797 1.11941 1.13234 1.25548 0.85011 1.01136 0.93598 1.20594 0.90060 0.97686 0.99191 1.19065 0.93871 0.94037 0.93538 1.21144 1.10974 0.95918 1.28149 0.92250 1.25003 0.97859 0.94816 0.96529 1.69973 1.37712 1.08231 1.37205 0.86568 0.82015 0.79647 0.79652 1.20667 1.21193 1.19666 1.46179 1.09378 1.39403 1.22080 1.21898 1.00116 0.93197 0.85158 1.23096 0.98998 0.94478 0.98830 0.88328 1.23266 1.02514 0.95119 0.97660 1.23333 0.88142 0.96120 0.94798 1.88426 1.43510 1.29659 1.68474 1.23438 0.98750 0.81995 0.98567 0.89762 0.94333 0.94324 0.92286 0.93034 0.88549 0.91207 0.93876 0.90918 0.89798 0.89208 0.91023 0.96892 0.95446 0.92893 0.88649 0.87527 0.89528 0.89621 0.89620 0.92305 0.89783 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.88 10.65 -35.23 -0.38 -4.26 16 3 C 0.06 0.55 5.99 37.16 0.22 0.77 16 4 C 0.07 0.83 4.76 -3.82 -0.02 0.81 16 5 N -0.45 -5.65 4.73 -182.37 -0.86 -6.52 16 6 C 0.02 0.19 9.11 60.07 0.55 0.73 16 7 C 0.33 5.50 6.98 -318.89 -2.22 3.28 16 8 N -0.32 -6.36 11.32 30.31 0.34 -6.02 16 9 N -0.29 -6.32 12.18 32.99 0.40 -5.92 16 10 C 0.21 4.21 7.07 -154.01 -1.09 3.12 16 11 C -0.04 -0.73 5.20 -27.88 -0.15 -0.87 16 12 C 0.03 0.84 4.96 -27.88 -0.14 0.70 16 13 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 17 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 N -0.48 -7.74 2.64 -114.08 -0.30 -8.04 16 22 C 0.12 1.52 5.13 -4.04 -0.02 1.50 16 23 C -0.13 -1.54 3.26 -88.67 -0.29 -1.83 16 24 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 25 C -0.15 -1.33 6.62 -24.48 -0.16 -1.49 16 26 C 0.05 0.53 7.78 38.19 0.30 0.83 16 27 O -0.38 -5.38 11.36 -35.23 -0.40 -5.78 16 28 C 0.05 0.67 7.00 37.88 0.27 0.94 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.37 6.43 -51.93 -0.33 0.04 16 34 H 0.10 1.27 7.93 -51.93 -0.41 0.85 16 35 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.07 0.74 5.48 -51.92 -0.28 0.46 16 38 H 0.08 0.65 6.58 -51.93 -0.34 0.31 16 39 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 40 H 0.07 1.31 4.71 -51.93 -0.24 1.07 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.10 1.01 5.65 -51.93 -0.29 0.72 16 45 H 0.11 1.43 7.34 -51.93 -0.38 1.05 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.08 1.26 4.69 -51.93 -0.24 1.02 16 51 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -34.09 403.23 -9.86 -43.96 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -8.41 Total: -0.82 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.05 Total: -3.21 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.32 Total: -52.20 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.78 Total: -10.04 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.09 -9.86 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344374162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.740 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds