Wall clock time and date at job start Tue Mar 31 2020 20:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99970 * 2 1 4 4 C 1.53001 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47387 * 64.99585 * 4 3 2 6 6 C 1.46904 * 110.99353 * 66.04679 * 5 4 3 7 7 C 1.38572 * 111.00026 * 189.99778 * 5 4 3 8 8 N 1.31214 * 126.47853 * 348.45540 * 7 5 4 9 9 N 1.28526 * 109.86503 * 179.81734 * 8 7 5 10 10 C 1.30297 * 110.05152 * 0.45885 * 9 8 7 11 11 C 1.50704 * 126.34525 * 179.76273 * 10 9 8 12 12 C 1.53007 * 109.46997 * 276.65772 * 11 10 9 13 13 C 1.50698 * 109.46807 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00352 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99694 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00145 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46930 * 89.99905 * 17 15 13 19 19 H 1.48501 * 109.46983 * 210.00014 * 17 15 13 20 20 H 1.48503 * 109.46627 * 329.99954 * 17 15 13 21 21 N 1.36456 * 126.47005 * 168.76787 * 7 5 4 22 22 C 1.46497 * 127.13803 * 0.02562 * 21 7 5 23 23 C 1.53010 * 109.47119 * 276.60209 * 22 21 7 24 24 H 1.08997 * 110.74767 * 57.55440 * 23 22 21 25 25 C 1.55303 * 110.84776 * 181.24437 * 23 22 21 26 26 C 1.54948 * 100.94140 * 152.32537 * 25 23 22 27 27 O 1.43653 * 105.13239 * 323.55800 * 26 25 23 28 28 C 1.43232 * 109.97268 * 24.42628 * 27 26 25 29 29 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47377 * 300.00154 * 1 2 3 31 31 H 1.09000 * 109.46658 * 60.00217 * 1 2 3 32 32 H 1.09003 * 109.47404 * 60.00204 * 3 2 1 33 33 H 1.08995 * 109.47369 * 299.99803 * 3 2 1 34 34 H 1.09002 * 109.47062 * 304.99778 * 4 3 2 35 35 H 1.09004 * 109.47209 * 185.00399 * 4 3 2 36 36 H 1.09005 * 109.47196 * 55.47477 * 6 5 4 37 37 H 1.09008 * 109.46958 * 175.47041 * 6 5 4 38 38 H 1.08994 * 109.47220 * 295.47314 * 6 5 4 39 39 H 1.08992 * 109.47169 * 36.66298 * 11 10 9 40 40 H 1.09001 * 109.46666 * 156.66547 * 11 10 9 41 41 H 1.08997 * 109.47131 * 300.00800 * 12 11 10 42 42 H 1.09003 * 109.46393 * 60.00178 * 12 11 10 43 43 H 0.97000 * 120.00199 * 180.02562 * 16 15 13 44 44 H 1.09000 * 109.47484 * 36.60199 * 22 21 7 45 45 H 1.09004 * 109.47450 * 156.60489 * 22 21 7 46 46 H 1.08993 * 111.12746 * 270.24657 * 25 23 22 47 47 H 1.09004 * 111.12519 * 34.40784 * 25 23 22 48 48 H 1.09002 * 110.31071 * 204.64405 * 26 25 23 49 49 H 1.08997 * 110.39330 * 82.51203 * 26 25 23 50 50 H 1.08996 * 109.83242 * 238.77152 * 28 27 26 51 51 H 1.09001 * 109.83112 * 117.80119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5621 -1.2542 6 6 3.6969 1.4346 -2.4022 7 6 5.3228 0.2330 -1.1981 8 7 6.1813 0.6129 -0.2813 9 7 7.3405 0.1203 -0.5376 10 6 7.2929 -0.5892 -1.6294 11 6 8.4430 -1.3254 -2.2669 12 6 9.2521 -0.3566 -3.1317 13 6 10.4018 -1.0929 -3.7697 14 1 10.5412 -2.1465 -3.5780 15 6 11.2757 -0.4214 -4.5982 16 7 11.1062 0.8618 -4.8313 17 14 12.7004 -1.3343 -5.3896 18 1 12.2696 -1.8830 -6.7006 19 1 13.8355 -0.3987 -5.5935 20 1 13.1286 -2.4467 -4.5039 21 7 6.0059 -0.5427 -2.0890 22 6 5.4714 -1.1908 -3.2892 23 6 4.8174 -2.5191 -2.9033 24 1 4.0306 -2.3621 -2.1655 25 6 4.2665 -3.2492 -4.1584 26 6 4.3481 -4.7267 -3.6987 27 8 5.5458 -4.8083 -2.9098 28 6 5.8709 -3.5183 -2.3790 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8507 0.5685 0.8427 35 1 3.9785 2.1765 0.0903 36 1 4.1572 2.4092 -2.2392 37 1 4.1061 0.9865 -3.3078 38 1 2.6192 1.5554 -2.5115 39 1 9.0841 -1.7408 -1.4895 40 1 8.0572 -2.1326 -2.8895 41 1 8.6109 0.0588 -3.9091 42 1 9.6378 0.4507 -2.5091 43 1 11.7207 1.3341 -5.4145 44 1 4.7288 -0.5413 -3.7527 45 1 6.2823 -1.3762 -3.9937 46 1 3.2362 -2.9574 -4.3620 47 1 4.9017 -3.0721 -5.0263 48 1 4.4179 -5.3882 -4.5622 49 1 3.4786 -4.9849 -3.0943 50 1 6.8637 -3.2195 -2.7155 51 1 5.8420 -3.5486 -1.2898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344374162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:43 Heat of formation + Delta-G solvation = -25.564799 kcal Electronic energy + Delta-G solvation = -31044.674394 eV Core-core repulsion = 26980.207792 eV Total energy + Delta-G solvation = -4064.466602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.07569 -40.48658 -39.53061 -37.88688 -36.76963 -35.86857 -33.77203 -33.19481 -31.19216 -30.44592 -30.21221 -28.25057 -27.21479 -26.96750 -26.40955 -24.04364 -23.58593 -23.28415 -22.28248 -21.36500 -21.14793 -18.73912 -18.26109 -17.93111 -17.73029 -17.44151 -17.31123 -16.63061 -16.50565 -16.37619 -16.05937 -15.80122 -15.49416 -15.26979 -15.00227 -14.92025 -14.60488 -14.31290 -14.13189 -13.72032 -13.59943 -13.27478 -13.23252 -13.10617 -12.86115 -12.74312 -12.60190 -12.53440 -12.44070 -12.42841 -12.15954 -11.97282 -11.90277 -11.81457 -11.73592 -11.54586 -11.31222 -11.08421 -10.67640 -10.58254 -10.50025 -10.47769 -9.32217 -8.20491 -6.32594 0.74583 1.18266 1.42586 1.44375 1.55471 1.78687 2.41921 2.56793 2.85356 2.89804 3.13717 3.25748 3.39776 3.57645 3.65947 3.79336 3.92352 3.94354 4.03412 4.08875 4.12687 4.20100 4.30299 4.36588 4.40227 4.45371 4.49518 4.56158 4.59223 4.61373 4.64927 4.65618 4.73716 4.73925 4.83129 4.85421 4.89265 4.93140 4.93961 4.98735 5.06720 5.20031 5.42850 5.47804 5.57781 5.62848 5.78246 5.97776 6.13952 6.18072 6.33454 6.82776 7.37332 7.74058 8.91471 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.003348 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.400048 B = 8360.374406 C = 9956.875210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.071 3.929 4 C 0.072 3.928 5 N -0.440 5.440 6 C 0.016 3.984 7 C 0.353 3.647 8 N -0.359 5.359 9 N -0.330 5.330 10 C 0.200 3.800 11 C -0.018 4.018 12 C 0.046 3.954 13 C -0.539 4.539 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.262 1.262 21 N -0.470 5.470 22 C 0.114 3.886 23 C -0.123 4.123 24 H 0.096 0.904 25 C -0.135 4.135 26 C 0.043 3.957 27 O -0.406 6.406 28 C 0.050 3.950 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.093 0.907 41 H -0.005 1.005 42 H -0.015 1.015 43 H 0.264 0.736 44 H 0.124 0.876 45 H 0.099 0.901 46 H 0.117 0.883 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.604 -3.458 1.416 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.006 4.006 4 C -0.055 4.055 5 N -0.165 5.165 6 C -0.130 4.130 7 C -0.004 4.004 8 N -0.203 5.203 9 N -0.168 5.168 10 C -0.069 4.069 11 C -0.058 4.058 12 C 0.008 3.992 13 C -0.577 4.577 14 H 0.088 0.912 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.187 1.187 21 N -0.164 5.164 22 C -0.008 4.008 23 C -0.142 4.142 24 H 0.114 0.886 25 C -0.173 4.173 26 C -0.033 4.033 27 O -0.326 6.326 28 C -0.027 4.027 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.013 0.987 42 H 0.004 0.996 43 H 0.072 0.928 44 H 0.142 0.858 45 H 0.118 0.882 46 H 0.135 0.865 47 H 0.108 0.892 48 H 0.121 0.879 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -26.066 -3.412 2.540 26.411 hybrid contribution 0.796 0.489 -1.091 1.436 sum -25.270 -2.924 1.449 25.480 Atomic orbital electron populations 1.22875 0.79827 1.03399 1.00827 1.87974 1.20956 1.28050 1.95557 1.22621 0.90396 0.85241 1.02296 1.22157 0.95196 0.98869 0.89316 1.58832 1.05638 1.44678 1.07317 1.22797 1.04782 0.94153 0.91279 1.22813 0.91725 0.95695 0.90140 1.74418 0.96375 1.23914 1.25641 1.73891 1.15396 1.12961 1.14590 1.25177 0.86227 1.01651 0.93818 1.20256 0.90010 0.96971 0.98536 1.18810 0.93837 0.93691 0.92886 1.21568 1.11527 0.96550 1.28066 0.91243 1.25948 1.00785 0.95583 0.97135 1.70115 1.39014 1.10013 1.38120 0.85443 0.78196 0.78381 0.79035 1.19332 1.21166 1.18660 1.46270 1.08250 1.39117 1.22790 1.22220 1.00541 0.94256 0.83754 1.22981 0.97936 0.93202 1.00083 0.88586 1.23279 1.04209 0.93631 0.96169 1.23628 0.87107 0.97342 0.95198 1.88400 1.45369 1.29691 1.69155 1.23304 0.98816 0.82984 0.97582 0.89376 0.93315 0.92877 0.90480 0.90901 0.91033 0.91206 0.94359 0.90722 0.86324 0.89686 0.88879 0.98662 0.99632 0.92767 0.85827 0.88224 0.86495 0.89162 0.87927 0.91135 0.91446 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.45 10.65 -148.98 -1.59 -9.03 16 3 C 0.07 1.04 5.99 71.98 0.43 1.47 16 4 C 0.07 1.56 4.76 86.30 0.41 1.97 16 5 N -0.44 -10.58 4.73 -730.90 -3.46 -14.04 16 6 C 0.02 0.29 9.11 127.69 1.16 1.45 16 7 C 0.35 11.67 6.98 260.12 1.81 13.49 16 8 N -0.36 -14.66 11.32 -58.01 -0.66 -15.32 16 9 N -0.33 -15.06 12.18 -49.53 -0.60 -15.66 16 10 C 0.20 8.19 7.07 137.64 0.97 9.17 16 11 C -0.02 -0.77 5.20 29.85 0.16 -0.62 16 12 C 0.05 2.43 4.96 29.85 0.15 2.58 16 13 C -0.54 -29.93 9.11 25.60 0.23 -29.69 16 14 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 15 C 0.00 0.21 5.46 84.65 0.46 0.67 16 16 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 17 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 N -0.47 -15.42 2.64 -514.84 -1.36 -16.78 16 22 C 0.11 2.75 5.13 86.38 0.44 3.19 16 23 C -0.12 -2.62 3.26 -9.53 -0.03 -2.65 16 24 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 25 C -0.14 -2.01 6.62 32.05 0.21 -1.80 16 26 C 0.04 0.76 7.78 72.65 0.57 1.33 16 27 O -0.41 -11.15 11.36 -148.98 -1.69 -12.84 16 28 C 0.05 1.37 7.00 72.45 0.51 1.88 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.76 6.43 -2.39 -0.02 0.74 16 34 H 0.07 1.92 7.93 -2.39 -0.02 1.90 16 35 H 0.07 1.51 8.08 -2.38 -0.02 1.49 16 36 H 0.04 0.74 8.09 -2.38 -0.02 0.72 16 37 H 0.07 1.31 5.48 -2.38 -0.01 1.30 16 38 H 0.12 1.32 6.58 -2.39 -0.02 1.31 16 39 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.09 3.49 4.71 -2.39 -0.01 3.48 16 41 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 43 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.12 2.29 5.65 -2.39 -0.01 2.28 16 45 H 0.10 2.60 7.34 -2.38 -0.02 2.58 16 46 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.09 1.31 8.04 -2.38 -0.02 1.29 16 48 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 2.06 4.69 -2.39 -0.01 2.05 16 51 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -77.41 403.23 2.62 -74.79 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.92 Total: 15.48 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 8.74 Total: 3.97 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.79 Total: -118.03 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -3.28 Total: -21.87 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.41 2.62 -74.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344374162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.225 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds