Wall clock time and date at job start Tue Mar 31 2020 20:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.46298 * 113.99801 * 2 1 4 4 C 1.46901 * 110.99727 * 116.04931 * 3 2 1 5 5 C 1.38579 * 111.00176 * 239.99892 * 3 2 1 6 6 N 1.31216 * 126.47356 * 216.07008 * 5 3 2 7 7 N 1.28534 * 109.86207 * 179.97438 * 6 5 3 8 8 C 1.30302 * 110.04959 * 0.02562 * 7 6 5 9 9 C 1.50692 * 126.34628 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47364 * 90.02143 * 9 8 7 11 11 C 1.52994 * 109.47553 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47455 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99613 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00129 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99933 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99871 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46889 * 60.00429 * 16 14 12 18 18 H 1.48504 * 109.46804 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47225 * 300.00214 * 16 14 12 20 20 N 1.36447 * 126.47227 * 36.05248 * 5 3 2 21 21 C 1.46499 * 127.13843 * 359.97438 * 20 5 3 22 22 C 1.53002 * 109.47156 * 89.97535 * 21 20 5 23 23 H 1.09000 * 109.48282 * 304.98087 * 22 21 20 24 24 C 1.53090 * 109.48094 * 184.94456 * 22 21 20 25 25 C 1.53187 * 109.16387 * 182.40730 * 24 22 21 26 26 C 1.53184 * 109.03136 * 56.98100 * 25 24 22 27 27 C 1.53092 * 109.16390 * 303.02041 * 26 25 24 28 28 O 1.42901 * 109.47751 * 65.00309 * 22 21 20 29 29 H 1.08998 * 109.47064 * 59.99662 * 1 2 3 30 30 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46919 * 299.99604 * 1 2 3 32 32 H 1.09002 * 109.47141 * 183.95459 * 4 3 2 33 33 H 1.09003 * 109.47307 * 303.95388 * 4 3 2 34 34 H 1.08999 * 109.47551 * 63.95263 * 4 3 2 35 35 H 1.08999 * 109.47287 * 210.01873 * 9 8 7 36 36 H 1.09001 * 109.47395 * 330.02143 * 9 8 7 37 37 H 1.09003 * 109.47135 * 300.00247 * 10 9 8 38 38 H 1.09001 * 109.46864 * 59.99675 * 10 9 8 39 39 H 1.09003 * 109.46903 * 300.00146 * 11 10 9 40 40 H 1.09001 * 109.47499 * 59.99820 * 11 10 9 41 41 H 0.96996 * 119.99645 * 179.97438 * 15 14 12 42 42 H 1.08994 * 109.47602 * 209.97881 * 21 20 5 43 43 H 1.09000 * 109.47236 * 329.97970 * 21 20 5 44 44 H 1.08997 * 109.52810 * 302.31776 * 24 22 21 45 45 H 1.08995 * 109.52147 * 62.50761 * 24 22 21 46 46 H 1.08994 * 109.54116 * 297.11975 * 25 24 22 47 47 H 1.08991 * 109.61546 * 176.89111 * 25 24 22 48 48 H 1.08997 * 109.52130 * 183.11391 * 26 25 24 49 49 H 1.09002 * 109.52123 * 62.92752 * 26 25 24 50 50 H 1.09002 * 109.47892 * 297.62431 * 27 26 25 51 51 H 1.09000 * 109.48615 * 177.59724 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7883 1.5725 1.2321 5 6 2.8170 1.5272 -1.1204 6 7 3.9390 2.2052 -1.1757 7 7 4.4088 2.1754 -2.3717 8 6 3.6205 1.4828 -3.1442 9 6 3.8201 1.2140 -4.6134 10 6 4.6260 -0.0743 -4.7914 11 6 4.8293 -0.3468 -6.2831 12 6 5.6237 -1.6154 -6.4584 13 1 5.9505 -2.1718 -5.5924 14 6 5.9323 -2.0662 -7.7243 15 7 5.5338 -1.3889 -8.7789 16 14 6.9164 -3.6391 -7.9415 17 1 6.1799 -4.7726 -7.3267 18 1 7.1126 -3.9041 -9.3894 19 1 8.2382 -3.4911 -7.2812 20 7 2.5786 1.0450 -2.3744 21 6 1.4425 0.2271 -2.8063 22 6 0.3069 1.1388 -3.2755 23 1 0.0573 1.8453 -2.4840 24 6 -0.9232 0.2911 -3.6102 25 6 -2.0351 1.2042 -4.1360 26 6 -1.5137 1.9774 -5.3513 27 6 -0.2608 2.7599 -4.9493 28 8 0.7214 1.8551 -4.4405 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1611 2.5967 1.2380 33 1 2.1423 1.4160 2.0961 34 1 3.6287 0.8797 1.2768 35 1 2.8498 1.1054 -5.0980 36 1 4.3605 2.0460 -5.0649 37 1 5.5964 0.0343 -4.3068 38 1 4.0856 -0.9062 -4.3400 39 1 3.8591 -0.4552 -6.7681 40 1 5.3700 0.4852 -6.7342 41 1 5.7513 -1.7058 -9.6694 42 1 1.7518 -0.4199 -3.6271 43 1 1.0969 -0.3840 -1.9725 44 1 -0.6633 -0.4428 -4.3731 45 1 -1.2673 -0.2219 -2.7122 46 1 -2.3297 1.9062 -3.3561 47 1 -2.8953 0.6021 -4.4285 48 1 -2.2802 2.6703 -5.6983 49 1 -1.2658 1.2775 -6.1493 50 1 -0.5181 3.4876 -4.1797 51 1 0.1393 3.2783 -5.8207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349465152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:33 Heat of formation + Delta-G solvation = 25.627780 kcal Electronic energy + Delta-G solvation = -31445.107325 eV Core-core repulsion = 27382.860600 eV Total energy + Delta-G solvation = -4062.246725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.81189 -39.70534 -38.02080 -35.53369 -34.64782 -34.21936 -33.90487 -32.36214 -31.68295 -29.62127 -27.72012 -27.08315 -26.85900 -25.46101 -24.49338 -23.70291 -22.91707 -20.96631 -20.77446 -20.56264 -19.95586 -18.00946 -16.85004 -16.73197 -16.41567 -16.35744 -16.14094 -15.79400 -15.43032 -14.90796 -14.81136 -14.48684 -14.46779 -14.02219 -13.79833 -13.58665 -13.38271 -13.03490 -12.90574 -12.83493 -12.46519 -12.22280 -12.15412 -11.95682 -11.64251 -11.48703 -11.38700 -11.31950 -11.19893 -10.85007 -10.80345 -10.67332 -10.61129 -10.52415 -10.49057 -10.11131 -9.87351 -9.66738 -9.65526 -9.35406 -9.08222 -8.31189 -8.20794 -5.96718 -3.98654 1.33110 2.30110 2.52102 3.18910 3.35720 3.39845 3.43012 3.44637 4.12830 4.33582 4.47960 4.48933 4.49922 4.62684 4.68957 4.78150 4.85664 4.87710 4.96384 4.98426 5.06546 5.09071 5.13173 5.24667 5.26224 5.27909 5.35062 5.38949 5.41384 5.44858 5.53171 5.59851 5.64271 5.73337 5.77935 5.91538 5.98037 6.01748 6.13360 6.22889 6.41212 6.59489 6.73840 6.87328 6.97384 7.08144 7.17575 7.70756 7.85192 8.03399 8.46036 8.95214 9.07774 9.65024 11.14522 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.003563 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.318557 B = 7855.767645 C = 9385.282595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.254 6.254 3 N -0.273 5.273 4 C 0.027 3.973 5 C 0.317 3.683 6 N -0.299 5.299 7 N -0.292 5.292 8 C 0.229 3.771 9 C -0.038 4.038 10 C -0.102 4.102 11 C 0.025 3.975 12 C -0.520 4.520 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.464 5.464 21 C 0.104 3.896 22 C 0.078 3.922 23 H 0.063 0.937 24 C -0.150 4.150 25 C -0.119 4.119 26 C -0.158 4.158 27 C 0.062 3.938 28 O -0.366 6.366 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.017 0.983 40 H 0.020 0.980 41 H 0.261 0.739 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.046 0.954 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.798 6.099 15.895 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 N -0.042 5.042 4 C -0.120 4.120 5 C -0.040 4.040 6 N -0.148 5.148 7 N -0.131 5.131 8 C -0.039 4.039 9 C -0.078 4.078 10 C -0.141 4.141 11 C -0.013 4.013 12 C -0.558 4.558 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.158 5.158 21 C -0.019 4.019 22 C 0.019 3.981 23 H 0.081 0.919 24 C -0.188 4.188 25 C -0.156 4.156 26 C -0.196 4.196 27 C -0.015 4.015 28 O -0.285 6.285 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.065 0.935 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.795 6.992 16.116 25.727 hybrid contribution -0.567 -2.019 -0.378 2.130 sum -19.362 4.973 15.738 25.442 Atomic orbital electron populations 1.22966 0.80114 1.02753 1.01575 1.90866 1.21442 1.16430 1.96555 1.64492 1.30376 1.08676 1.00667 1.22712 0.97110 1.03867 0.88321 1.22818 0.94608 1.01759 0.84774 1.74539 1.04257 1.21659 1.14311 1.74067 1.23322 1.19114 0.96599 1.25318 0.84572 0.96192 0.97790 1.20425 1.03028 1.01389 0.82948 1.21651 0.98172 0.92760 1.01517 1.19077 0.97033 0.96767 0.88383 1.21200 1.34227 1.08406 0.91989 0.92852 1.24995 0.96067 0.97142 0.96100 1.69954 1.46431 1.39111 0.97958 0.86685 0.80769 0.83819 0.76895 1.20352 1.21286 1.20207 1.46069 1.20994 1.41256 1.07523 1.22295 0.84097 0.92680 1.02849 1.22441 0.93228 0.93707 0.88736 0.91926 1.22184 0.95130 0.99017 1.02519 1.21545 0.97766 0.98530 0.97800 1.22213 0.98200 1.00404 0.98761 1.22581 0.88918 0.91071 0.98883 1.88041 1.40053 1.56856 1.43534 0.93050 0.88186 0.92670 0.87562 0.89587 0.92683 0.88975 0.88758 0.92649 0.93844 0.96433 0.96174 0.92987 0.87192 0.86270 0.89952 0.90703 0.91967 0.91106 0.90853 0.90476 0.93531 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.25 101.05 1.04 1.20 16 2 O -0.25 -2.82 8.96 -13.92 -0.12 -2.95 16 3 N -0.27 -3.40 5.14 -68.05 -0.35 -3.75 16 4 C 0.03 0.28 9.65 60.07 0.58 0.86 16 5 C 0.32 5.03 7.78 -318.89 -2.48 2.54 16 6 N -0.30 -5.51 11.35 30.31 0.34 -5.16 16 7 N -0.29 -5.83 12.18 32.99 0.40 -5.43 16 8 C 0.23 4.16 7.21 -154.01 -1.11 3.05 16 9 C -0.04 -0.70 5.42 -27.89 -0.15 -0.85 16 10 C -0.10 -2.18 5.13 -26.73 -0.14 -2.32 16 11 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 12 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 N -0.46 -7.25 2.76 -114.09 -0.31 -7.56 16 21 C 0.10 1.27 5.05 -4.04 -0.02 1.25 16 22 C 0.08 0.82 2.02 -26.68 -0.05 0.77 16 23 H 0.06 0.68 7.50 -51.93 -0.39 0.29 16 24 C -0.15 -1.18 5.34 -26.59 -0.14 -1.32 16 25 C -0.12 -0.84 6.03 -26.54 -0.16 -1.00 16 26 C -0.16 -1.27 6.14 -26.59 -0.16 -1.43 16 27 C 0.06 0.61 6.84 37.21 0.25 0.87 16 28 O -0.37 -4.65 8.72 -35.23 -0.31 -4.95 16 29 H 0.05 0.35 4.86 -51.93 -0.25 0.10 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.11 1.07 7.92 -51.93 -0.41 0.66 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.61 6.34 -51.93 -0.33 1.28 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.11 1.44 7.88 -51.93 -0.41 1.03 16 43 H 0.12 1.26 4.28 -51.93 -0.22 1.03 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.43 7.34 -51.93 -0.38 0.05 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -34.46 402.10 -10.38 -44.84 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.70 Total: -2.29 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.10 Total: -9.49 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.82 Total: -48.05 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.43 Total: -7.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.46 -10.38 -44.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349465152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.466 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds