Wall clock time and date at job start Tue Mar 31 2020 20:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.46298 * 113.99801 * 2 1 4 4 C 1.46901 * 110.99727 * 116.04931 * 3 2 1 5 5 C 1.38579 * 111.00176 * 239.99892 * 3 2 1 6 6 N 1.31216 * 126.47356 * 216.07008 * 5 3 2 7 7 N 1.28534 * 109.86207 * 179.97438 * 6 5 3 8 8 C 1.30302 * 110.04959 * 0.02562 * 7 6 5 9 9 C 1.50692 * 126.34628 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47364 * 90.02143 * 9 8 7 11 11 C 1.52994 * 109.47553 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47455 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99613 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00129 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99933 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99871 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46889 * 60.00429 * 16 14 12 18 18 H 1.48504 * 109.46804 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47225 * 300.00214 * 16 14 12 20 20 N 1.36447 * 126.47227 * 36.05248 * 5 3 2 21 21 C 1.46499 * 127.13843 * 359.97438 * 20 5 3 22 22 C 1.53002 * 109.47156 * 89.97535 * 21 20 5 23 23 H 1.09000 * 109.48282 * 304.98087 * 22 21 20 24 24 C 1.53090 * 109.48094 * 184.94456 * 22 21 20 25 25 C 1.53187 * 109.16387 * 182.40730 * 24 22 21 26 26 C 1.53184 * 109.03136 * 56.98100 * 25 24 22 27 27 C 1.53092 * 109.16390 * 303.02041 * 26 25 24 28 28 O 1.42901 * 109.47751 * 65.00309 * 22 21 20 29 29 H 1.08998 * 109.47064 * 59.99662 * 1 2 3 30 30 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46919 * 299.99604 * 1 2 3 32 32 H 1.09002 * 109.47141 * 183.95459 * 4 3 2 33 33 H 1.09003 * 109.47307 * 303.95388 * 4 3 2 34 34 H 1.08999 * 109.47551 * 63.95263 * 4 3 2 35 35 H 1.08999 * 109.47287 * 210.01873 * 9 8 7 36 36 H 1.09001 * 109.47395 * 330.02143 * 9 8 7 37 37 H 1.09003 * 109.47135 * 300.00247 * 10 9 8 38 38 H 1.09001 * 109.46864 * 59.99675 * 10 9 8 39 39 H 1.09003 * 109.46903 * 300.00146 * 11 10 9 40 40 H 1.09001 * 109.47499 * 59.99820 * 11 10 9 41 41 H 0.96996 * 119.99645 * 179.97438 * 15 14 12 42 42 H 1.08994 * 109.47602 * 209.97881 * 21 20 5 43 43 H 1.09000 * 109.47236 * 329.97970 * 21 20 5 44 44 H 1.08997 * 109.52810 * 302.31776 * 24 22 21 45 45 H 1.08995 * 109.52147 * 62.50761 * 24 22 21 46 46 H 1.08994 * 109.54116 * 297.11975 * 25 24 22 47 47 H 1.08991 * 109.61546 * 176.89111 * 25 24 22 48 48 H 1.08997 * 109.52130 * 183.11391 * 26 25 24 49 49 H 1.09002 * 109.52123 * 62.92752 * 26 25 24 50 50 H 1.09002 * 109.47892 * 297.62431 * 27 26 25 51 51 H 1.09000 * 109.48615 * 177.59724 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7883 1.5725 1.2321 5 6 2.8170 1.5272 -1.1204 6 7 3.9390 2.2052 -1.1757 7 7 4.4088 2.1754 -2.3717 8 6 3.6205 1.4828 -3.1442 9 6 3.8201 1.2140 -4.6134 10 6 4.6260 -0.0743 -4.7914 11 6 4.8293 -0.3468 -6.2831 12 6 5.6237 -1.6154 -6.4584 13 1 5.9505 -2.1718 -5.5924 14 6 5.9323 -2.0662 -7.7243 15 7 5.5338 -1.3889 -8.7789 16 14 6.9164 -3.6391 -7.9415 17 1 6.1799 -4.7726 -7.3267 18 1 7.1126 -3.9041 -9.3894 19 1 8.2382 -3.4911 -7.2812 20 7 2.5786 1.0450 -2.3744 21 6 1.4425 0.2271 -2.8063 22 6 0.3069 1.1388 -3.2755 23 1 0.0573 1.8453 -2.4840 24 6 -0.9232 0.2911 -3.6102 25 6 -2.0351 1.2042 -4.1360 26 6 -1.5137 1.9774 -5.3513 27 6 -0.2608 2.7599 -4.9493 28 8 0.7214 1.8551 -4.4405 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1611 2.5967 1.2380 33 1 2.1423 1.4160 2.0961 34 1 3.6287 0.8797 1.2768 35 1 2.8498 1.1054 -5.0980 36 1 4.3605 2.0460 -5.0649 37 1 5.5964 0.0343 -4.3068 38 1 4.0856 -0.9062 -4.3400 39 1 3.8591 -0.4552 -6.7681 40 1 5.3700 0.4852 -6.7342 41 1 5.7513 -1.7058 -9.6694 42 1 1.7518 -0.4199 -3.6271 43 1 1.0969 -0.3840 -1.9725 44 1 -0.6633 -0.4428 -4.3731 45 1 -1.2673 -0.2219 -2.7122 46 1 -2.3297 1.9062 -3.3561 47 1 -2.8953 0.6021 -4.4285 48 1 -2.2802 2.6703 -5.6983 49 1 -1.2658 1.2775 -6.1493 50 1 -0.5181 3.4876 -4.1797 51 1 0.1393 3.2783 -5.8207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349465152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:32 Heat of formation + Delta-G solvation = 7.241933 kcal Electronic energy + Delta-G solvation = -31445.904595 eV Core-core repulsion = 27382.860600 eV Total energy + Delta-G solvation = -4063.043995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.10340 -40.50949 -38.92075 -36.92228 -36.09624 -35.31436 -34.64148 -34.26864 -32.62942 -31.21514 -28.76738 -28.48243 -27.68235 -26.43130 -25.57083 -25.23241 -23.82053 -22.45621 -22.06767 -21.57012 -21.21439 -19.01085 -18.47749 -17.88005 -17.56333 -17.46872 -17.15984 -16.71506 -16.55281 -16.28100 -15.81411 -15.69319 -15.48613 -15.26151 -15.11946 -14.43596 -14.38252 -14.15520 -13.90202 -13.77220 -13.58492 -13.57921 -13.38414 -13.18031 -12.83228 -12.72867 -12.65061 -12.62553 -12.43457 -12.31782 -12.11629 -11.91601 -11.72001 -11.64756 -11.46525 -11.40373 -11.35899 -11.30628 -11.19068 -10.87741 -10.53025 -10.45478 -9.48124 -8.18110 -6.28763 0.26983 1.11578 1.35722 1.40518 1.43283 1.51224 1.92263 2.42219 2.62738 3.14918 3.20376 3.33986 3.51317 3.70489 3.82170 3.83795 3.92389 3.98834 4.05985 4.13331 4.19328 4.31383 4.36452 4.37014 4.43011 4.45763 4.49572 4.53538 4.54145 4.63151 4.66237 4.74250 4.81619 4.85338 4.87927 4.90593 5.01465 5.06502 5.09747 5.11712 5.15376 5.17375 5.34209 5.37312 5.51474 5.55712 5.73854 5.85501 5.95773 6.19570 6.26336 6.86221 7.39741 7.61256 8.93321 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.003563 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.318557 B = 7855.767645 C = 9385.282595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.262 6.262 3 N -0.273 5.273 4 C 0.027 3.973 5 C 0.331 3.669 6 N -0.331 5.331 7 N -0.323 5.323 8 C 0.215 3.785 9 C -0.022 4.022 10 C -0.084 4.084 11 C 0.031 3.969 12 C -0.545 4.545 13 H 0.054 0.946 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.961 3.039 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.271 1.271 20 N -0.460 5.460 21 C 0.098 3.902 22 C 0.083 3.917 23 H 0.063 0.937 24 C -0.146 4.146 25 C -0.116 4.116 26 C -0.155 4.155 27 C 0.056 3.944 28 O -0.398 6.398 29 H 0.054 0.946 30 H 0.129 0.871 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.042 0.958 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.003 0.997 40 H -0.004 1.004 41 H 0.264 0.736 42 H 0.099 0.901 43 H 0.140 0.860 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.063 0.937 50 H 0.052 0.948 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.002 4.683 17.516 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.262 6.262 3 N -0.041 5.041 4 C -0.119 4.119 5 C -0.026 4.026 6 N -0.179 5.179 7 N -0.163 5.163 8 C -0.053 4.053 9 C -0.061 4.061 10 C -0.122 4.122 11 C -0.006 4.006 12 C -0.583 4.583 13 H 0.072 0.928 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.196 1.196 20 N -0.155 5.155 21 C -0.023 4.023 22 C 0.024 3.976 23 H 0.081 0.919 24 C -0.184 4.184 25 C -0.154 4.154 26 C -0.193 4.193 27 C -0.020 4.020 28 O -0.318 6.318 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.060 0.940 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.021 0.979 40 H 0.014 0.986 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.157 0.843 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.082 0.918 50 H 0.071 0.929 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.017 5.582 17.751 28.071 hybrid contribution -0.011 -1.568 -0.807 1.764 sum -21.028 4.014 16.944 27.302 Atomic orbital electron populations 1.23333 0.77819 1.04847 1.02483 1.90881 1.23926 1.14722 1.96625 1.64471 1.29439 1.10233 0.99989 1.22825 0.97368 1.03386 0.88369 1.23209 0.93698 0.99940 0.85764 1.74432 1.05970 1.23686 1.13792 1.73964 1.24644 1.20138 0.97525 1.24987 0.85702 0.97216 0.97444 1.20108 1.02704 0.99480 0.83827 1.21352 0.98118 0.94577 0.98198 1.18935 0.95497 0.95192 0.90971 1.21607 1.34868 1.09444 0.92404 0.92755 1.25892 0.97032 1.00710 0.95689 1.70078 1.47446 1.40889 0.98492 0.85574 0.79200 0.79552 0.77169 1.19111 1.20542 1.19614 1.46192 1.21115 1.41015 1.07164 1.22608 0.83621 0.92863 1.03254 1.22462 0.93380 0.93624 0.88130 0.91945 1.22191 0.94065 0.98618 1.03528 1.21564 0.97734 0.98619 0.97433 1.22184 0.97673 1.00390 0.99017 1.22713 0.89302 0.91139 0.98855 1.87988 1.41768 1.57658 1.44397 0.92707 0.85338 0.91233 0.87848 0.86163 0.93953 0.88215 0.89358 0.93941 0.93298 0.97882 0.98564 0.92699 0.88315 0.84254 0.90917 0.87971 0.90888 0.89550 0.89193 0.91825 0.92929 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 10.25 113.37 1.16 1.28 16 2 O -0.26 -5.09 8.96 -50.16 -0.45 -5.54 16 3 N -0.27 -6.31 5.14 -369.22 -1.90 -8.21 16 4 C 0.03 0.51 9.65 127.69 1.23 1.74 16 5 C 0.33 10.36 7.78 260.12 2.02 12.39 16 6 N -0.33 -12.38 11.35 -58.01 -0.66 -13.04 16 7 N -0.32 -13.33 12.18 -49.54 -0.60 -13.93 16 8 C 0.22 8.04 7.21 137.63 0.99 9.03 16 9 C -0.02 -0.82 5.42 29.85 0.16 -0.66 16 10 C -0.08 -3.69 5.13 30.59 0.16 -3.53 16 11 C 0.03 1.67 4.97 29.85 0.15 1.82 16 12 C -0.55 -31.71 9.11 25.60 0.23 -31.47 16 13 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 14 C 0.00 0.29 5.46 84.65 0.46 0.75 16 15 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 16 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 N -0.46 -14.32 2.76 -514.87 -1.42 -15.74 16 21 C 0.10 2.31 5.05 86.38 0.44 2.74 16 22 C 0.08 1.63 2.02 30.63 0.06 1.69 16 23 H 0.06 1.24 7.50 -2.39 -0.02 1.22 16 24 C -0.15 -1.94 5.34 30.69 0.16 -1.78 16 25 C -0.12 -1.32 6.03 30.72 0.19 -1.13 16 26 C -0.16 -2.27 6.14 30.69 0.19 -2.09 16 27 C 0.06 1.09 6.84 72.01 0.49 1.58 16 28 O -0.40 -10.10 8.72 -148.98 -1.30 -11.40 16 29 H 0.05 0.54 4.86 -2.39 -0.01 0.53 16 30 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.10 2.00 7.92 -2.39 -0.02 1.98 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 3.62 6.34 -2.39 -0.02 3.61 16 36 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.10 2.56 7.88 -2.39 -0.02 2.54 16 43 H 0.14 2.63 4.28 -2.39 -0.01 2.62 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.10 0.79 7.34 -2.39 -0.02 0.77 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -76.03 402.10 4.99 -71.03 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.91 Total: 13.99 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 8.10 Total: -7.64 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.29 Total: -107.28 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.75 Total: -16.94 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.03 4.99 -71.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349465152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.277 kcal (2) G-P(sol) polarization free energy of solvation -76.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds