Wall clock time and date at job start Tue Mar 31 2020 21:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99567 * 2 1 4 4 H 1.48499 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47190 * 300.00425 * 3 2 1 6 6 H 1.48500 * 109.47019 * 60.00045 * 3 2 1 7 7 C 1.37874 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46806 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47125 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47153 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47611 * 305.00180 * 12 11 10 14 14 N 1.46902 * 109.47094 * 65.00184 * 12 11 10 15 15 C 1.50706 * 109.47238 * 184.99569 * 12 11 10 16 16 O 1.21279 * 120.00090 * 260.00132 * 15 12 11 17 17 N 1.34782 * 119.99655 * 80.00024 * 15 12 11 18 18 C 1.46496 * 119.99667 * 180.02562 * 17 15 12 19 19 C 1.53004 * 109.47216 * 274.99566 * 18 17 15 20 20 C 1.53008 * 109.47423 * 179.97438 * 19 18 17 21 21 C 1.52921 * 109.49636 * 59.89602 * 20 19 18 22 22 C 1.53106 * 109.55056 * 60.33966 * 21 20 19 23 23 C 1.53112 * 109.15228 * 176.84891 * 22 21 20 24 24 O 1.42897 * 109.41430 * 302.48352 * 23 22 21 25 25 C 1.42913 * 114.13370 * 61.14802 * 24 23 22 26 26 C 1.53105 * 109.39709 * 298.83645 * 25 24 23 27 27 C 1.52937 * 109.59714 * 300.16657 * 21 20 19 28 28 C 1.53001 * 109.47071 * 155.00181 * 18 17 15 29 29 H 0.96996 * 120.00607 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47278 * 60.00206 * 9 7 2 31 31 H 1.08998 * 109.46956 * 299.99192 * 9 7 2 32 32 H 1.08993 * 109.47403 * 59.99552 * 10 9 7 33 33 H 1.09006 * 109.47000 * 299.99368 * 10 9 7 34 34 H 1.09002 * 109.47159 * 59.99518 * 11 10 9 35 35 H 1.09001 * 109.46685 * 300.00024 * 11 10 9 36 36 H 1.00896 * 111.00210 * 59.99820 * 14 12 11 37 37 H 1.00901 * 111.00140 * 183.95546 * 14 12 11 38 38 H 0.96993 * 119.99545 * 0.02562 * 17 15 12 39 39 H 1.08998 * 109.47465 * 34.99407 * 18 17 15 40 40 H 1.09008 * 109.47269 * 299.96279 * 19 18 17 41 41 H 1.09007 * 109.46942 * 59.95628 * 19 18 17 42 42 H 1.09000 * 109.46814 * 299.88381 * 20 19 18 43 43 H 1.09005 * 109.46523 * 179.89827 * 20 19 18 44 44 H 1.08994 * 109.53031 * 296.75747 * 22 21 20 45 45 H 1.09005 * 109.52362 * 56.95085 * 22 21 20 46 46 H 1.08997 * 109.47985 * 182.49948 * 23 22 21 47 47 H 1.08998 * 109.47508 * 62.46098 * 23 22 21 48 48 H 1.09002 * 109.48227 * 178.85458 * 25 24 23 49 49 H 1.09002 * 109.47978 * 58.81300 * 25 24 23 50 50 H 1.09002 * 109.52087 * 297.65003 * 26 25 24 51 51 H 1.09005 * 109.52502 * 177.45774 * 26 25 24 52 52 H 1.08998 * 109.47102 * 299.85286 * 27 21 20 53 53 H 1.09007 * 109.46655 * 179.86555 * 27 21 20 54 54 H 1.09002 * 109.47533 * 300.04923 * 28 18 17 55 55 H 1.08998 * 109.47492 * 60.05571 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0018 11 6 1.4807 -4.9870 0.0012 12 6 2.4750 -6.1499 0.0018 13 1 3.1598 -6.0429 -0.8394 14 7 3.2371 -6.1417 1.2576 15 6 1.7258 -7.4516 -0.1225 16 8 1.5129 -8.1253 0.8632 17 7 1.2924 -7.8670 -1.3293 18 6 0.5636 -9.1320 -1.4501 19 6 1.5612 -10.2854 -1.5746 20 6 0.8001 -11.6068 -1.7002 21 6 -0.0922 -11.5660 -2.9414 22 6 0.7734 -11.3647 -4.1882 23 6 -0.1196 -11.4039 -5.4313 24 8 -0.8229 -12.6472 -5.4720 25 6 -1.6851 -12.8676 -4.3538 26 6 -0.8548 -12.8877 -3.0676 27 6 -1.0882 -10.4118 -2.8194 28 6 -0.3264 -9.0911 -2.6939 29 1 -0.4851 0.8400 0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6243 -2.5567 0.8904 32 1 2.8715 -3.6038 0.8921 33 1 2.8728 -3.6046 -0.8878 34 1 0.8549 -5.0449 -0.8895 35 1 0.8530 -5.0446 0.8905 36 1 2.6243 -6.2396 2.0532 37 1 3.9449 -6.8608 1.2557 38 1 1.4630 -7.3283 -2.1176 39 1 -0.0552 -9.2809 -0.5652 40 1 2.1796 -10.1370 -2.4600 41 1 2.1959 -10.3141 -0.6889 42 1 0.1832 -11.7564 -0.8141 43 1 1.5109 -12.4283 -1.7907 44 1 1.2759 -10.3992 -4.1310 45 1 1.5163 -12.1601 -4.2482 46 1 0.4968 -11.3056 -6.3249 47 1 -0.8352 -10.5827 -5.3908 48 1 -2.1962 -13.8231 -4.4716 49 1 -2.4213 -12.0656 -4.2988 50 1 -0.1462 -13.7151 -3.1044 51 1 -1.5155 -13.0105 -2.2093 52 1 -1.7081 -10.5589 -1.9351 53 1 -1.7214 -10.3832 -3.7062 54 1 -1.0366 -8.2689 -2.6058 55 1 0.2925 -8.9434 -3.5789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349833843.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:37 Heat of formation + Delta-G solvation = -150.299131 kcal Electronic energy + Delta-G solvation = -30255.623432 eV Core-core repulsion = 26289.288287 eV Total energy + Delta-G solvation = -3966.335145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.85079 -40.84919 -38.48969 -37.09610 -35.72736 -35.22353 -33.11816 -32.67749 -31.98854 -31.83098 -29.60978 -28.14795 -26.52934 -24.85021 -24.57931 -23.91103 -23.19905 -21.79098 -21.52660 -21.20803 -19.27402 -18.44117 -18.14558 -17.70731 -17.26620 -16.97954 -16.92103 -16.46615 -16.11030 -15.74468 -15.62752 -15.49956 -15.32892 -15.26077 -14.92862 -14.54044 -14.28976 -14.24301 -13.85657 -13.62621 -13.31218 -13.16319 -13.10790 -12.87715 -12.85646 -12.81934 -12.51600 -12.48918 -12.33672 -12.23710 -12.15907 -12.04581 -11.57829 -11.45931 -11.41650 -11.35283 -11.21202 -11.06572 -10.97896 -10.90335 -10.52368 -10.29043 -10.04220 -9.66232 -8.17111 -6.27394 1.41154 1.41852 1.52195 1.55469 2.17686 2.43497 3.02116 3.15912 3.51374 3.54529 3.58187 3.66808 3.85114 3.92627 3.99954 4.08306 4.12057 4.17765 4.21407 4.26953 4.34093 4.36322 4.46500 4.50305 4.53374 4.60014 4.67307 4.72988 4.75456 4.79291 4.83170 4.90213 4.93624 5.01843 5.05912 5.07432 5.14603 5.16499 5.17698 5.24841 5.26566 5.28000 5.34898 5.43932 5.48769 5.55587 5.61495 5.84980 5.94272 6.05087 6.30890 6.31939 6.44494 6.54119 6.90739 7.18438 7.41664 8.94824 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.001903 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.928089 B =14711.139711 C =15607.755308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.021 3.979 10 C -0.084 4.084 11 C -0.093 4.093 12 C 0.087 3.913 13 H 0.123 0.877 14 N -0.819 5.819 15 C 0.486 3.514 16 O -0.584 6.584 17 N -0.713 5.713 18 C 0.145 3.855 19 C -0.121 4.121 20 C -0.099 4.099 21 C -0.054 4.054 22 C -0.143 4.143 23 C 0.055 3.945 24 O -0.405 6.405 25 C 0.055 3.945 26 C -0.143 4.143 27 C -0.107 4.107 28 C -0.123 4.123 29 H 0.262 0.738 30 H -0.007 1.007 31 H -0.017 1.017 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.345 0.655 37 H 0.348 0.652 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.059 0.941 48 H 0.099 0.901 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.080 0.920 52 H 0.063 0.937 53 H 0.078 0.922 54 H 0.069 0.931 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 -28.906 -11.034 30.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.016 4.016 10 C -0.121 4.121 11 C -0.132 4.132 12 C -0.029 4.029 13 H 0.140 0.860 14 N -0.348 5.348 15 C 0.271 3.729 16 O -0.464 6.464 17 N -0.364 5.364 18 C 0.040 3.960 19 C -0.159 4.159 20 C -0.137 4.137 21 C -0.054 4.054 22 C -0.181 4.181 23 C -0.022 4.022 24 O -0.325 6.325 25 C -0.021 4.021 26 C -0.180 4.180 27 C -0.145 4.145 28 C -0.160 4.160 29 H 0.071 0.929 30 H 0.011 0.989 31 H 0.001 0.999 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.077 0.923 48 H 0.117 0.883 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.099 0.901 52 H 0.082 0.918 53 H 0.097 0.903 54 H 0.087 0.913 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.135 -28.659 -10.692 30.589 hybrid contribution -0.325 0.436 0.463 0.714 sum -0.190 -28.223 -10.229 30.020 Atomic orbital electron populations 1.70107 1.07781 1.27563 1.52165 1.26002 0.95784 1.03398 0.94975 0.85414 0.79165 0.78862 0.77696 1.18516 1.20271 1.20651 1.21766 0.93581 0.92461 1.49761 0.92190 1.19060 0.94579 0.93503 0.94437 1.21282 0.97521 0.92122 1.01221 1.21447 0.96706 0.93348 1.01654 1.21627 0.95446 0.89810 0.96037 0.85971 1.59041 1.17612 1.54877 1.03254 1.22393 0.78894 0.88456 0.83135 1.90654 1.58710 1.58560 1.38475 1.46164 1.56934 1.23592 1.09733 1.20984 0.92961 0.83048 0.98963 1.21846 0.97922 0.94416 1.01726 1.21474 0.98313 0.96593 0.97346 1.20496 0.95221 0.94883 0.94802 1.22293 0.98393 1.03310 0.94088 1.22741 0.94839 0.85928 0.98668 1.87902 1.60322 1.39523 1.44716 1.22725 0.91830 1.02297 0.85249 1.22210 0.99906 0.97172 0.98735 1.21619 0.97391 0.92864 1.02623 1.21815 0.98706 0.98605 0.96910 0.92903 0.98869 0.99864 0.92650 0.92530 0.90826 0.93789 0.84195 0.83838 0.74940 0.92347 0.90286 0.93853 0.92382 0.91219 0.89551 0.91534 0.88371 0.92297 0.88289 0.92370 0.91336 0.90148 0.91826 0.90347 0.91273 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 13.29 21.45 0.28 -57.26 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.08 -3.37 5.04 30.59 0.15 -3.21 16 11 C -0.09 -2.99 4.84 30.59 0.15 -2.84 16 12 C 0.09 2.19 3.15 44.17 0.14 2.33 16 13 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 14 N -0.82 -21.63 8.44 -171.79 -1.45 -23.08 16 15 C 0.49 12.30 7.03 87.66 0.62 12.92 16 16 O -0.58 -18.91 15.91 -3.03 -0.05 -18.96 16 17 N -0.71 -13.28 5.08 -442.52 -2.25 -15.53 16 18 C 0.15 2.51 2.45 44.99 0.11 2.62 16 19 C -0.12 -1.88 5.22 30.60 0.16 -1.72 16 20 C -0.10 -1.30 4.73 30.57 0.14 -1.16 16 21 C -0.05 -0.58 0.51 -52.15 -0.03 -0.61 16 22 C -0.14 -1.46 4.22 30.67 0.13 -1.33 16 23 C 0.05 0.60 6.57 72.02 0.47 1.08 16 24 O -0.41 -6.14 10.76 -148.98 -1.60 -7.75 16 25 C 0.06 0.61 6.57 72.02 0.47 1.08 16 26 C -0.14 -1.48 4.92 30.67 0.15 -1.33 16 27 C -0.11 -1.18 4.17 30.57 0.13 -1.05 16 28 C -0.12 -1.50 5.12 30.59 0.16 -1.35 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 32 H 0.05 2.31 7.75 -2.39 -0.02 2.29 16 33 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.34 9.83 8.58 -89.70 -0.77 9.06 16 37 H 0.35 7.84 9.06 -89.69 -0.81 7.02 16 38 H 0.41 5.69 8.60 -92.71 -0.80 4.89 16 39 H 0.06 1.36 7.58 -2.39 -0.02 1.34 16 40 H 0.08 1.03 6.52 -2.38 -0.02 1.01 16 41 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.86 8.14 -2.38 -0.02 0.85 16 44 H 0.09 0.76 4.86 -2.39 -0.01 0.75 16 45 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.06 0.57 6.60 -2.39 -0.02 0.56 16 48 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 0.57 6.60 -2.39 -0.02 0.55 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.08 0.73 8.14 -2.38 -0.02 0.72 16 52 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.08 0.77 5.00 -2.38 -0.01 0.75 16 54 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 55 H 0.09 0.81 6.38 -2.39 -0.02 0.80 16 Total: -1.00 -71.69 412.30 -0.72 -72.41 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.49 Total: 27.23 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.80 Total: -23.78 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -3.41 Total: -95.87 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.65 Total: -26.71 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.69 -0.72 -72.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349833843.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.886 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds