Wall clock time and date at job start Tue Mar 31 2020 20:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00011 * 2 1 4 4 C 1.46900 * 110.99854 * 123.95460 * 2 1 3 5 5 H 1.08993 * 109.67896 * 55.50715 * 4 2 1 6 6 C 1.53332 * 109.67630 * 294.99490 * 4 2 1 7 7 C 1.52826 * 108.08871 * 176.10511 * 6 4 2 8 8 C 1.50731 * 111.74499 * 58.92912 * 7 6 4 9 9 H 1.09001 * 109.26534 * 186.23914 * 8 7 6 10 10 C 1.53898 * 113.02082 * 65.13007 * 8 7 6 11 11 N 1.47821 * 104.06339 * 198.52803 * 10 8 7 12 12 C 1.34776 * 125.65321 * 203.35103 * 11 10 8 13 13 O 1.21585 * 120.00029 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99437 * 359.97438 * 12 11 10 15 15 C 1.46506 * 119.99535 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.46697 * 180.02562 * 15 14 12 17 17 O 1.21292 * 120.00501 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99836 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00417 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99661 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00393 * 179.97438 * 19 18 16 22 22 N 1.31403 * 120.00399 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 119.99780 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47036 * 90.00388 * 23 21 19 25 25 H 1.48498 * 109.46727 * 209.99889 * 23 21 19 26 26 H 1.48497 * 109.46949 * 330.00168 * 23 21 19 27 27 C 1.47175 * 108.69991 * 23.35076 * 11 10 8 28 28 C 1.54001 * 113.94417 * 308.69126 * 8 7 6 29 29 H 1.09000 * 112.70864 * 280.88765 * 28 8 7 30 30 C 1.52594 * 109.70644 * 176.03536 * 4 2 1 31 31 H 1.09000 * 109.46950 * 296.04737 * 1 2 3 32 32 H 1.08999 * 109.46948 * 56.04906 * 1 2 3 33 33 H 1.09002 * 109.46888 * 176.04883 * 1 2 3 34 34 H 1.09003 * 109.47251 * 183.95550 * 3 2 1 35 35 H 1.09005 * 109.47043 * 303.95344 * 3 2 1 36 36 H 1.08999 * 109.47552 * 63.95266 * 3 2 1 37 37 H 1.09004 * 109.73702 * 56.45701 * 6 4 2 38 38 H 1.08992 * 109.78364 * 295.77613 * 6 4 2 39 39 H 1.08996 * 109.02490 * 179.51341 * 7 6 4 40 40 H 1.09004 * 109.02484 * 298.34420 * 7 6 4 41 41 H 1.08997 * 110.51302 * 79.88855 * 10 8 7 42 42 H 1.09000 * 110.62837 * 317.22885 * 10 8 7 43 43 H 0.96992 * 120.00074 * 359.97438 * 14 12 11 44 44 H 1.08992 * 109.46837 * 300.00204 * 15 14 12 45 45 H 1.09002 * 109.46926 * 60.00206 * 15 14 12 46 46 H 0.97008 * 119.99979 * 359.97438 * 18 16 15 47 47 H 0.96998 * 120.00715 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.96206 * 241.58263 * 27 11 10 49 49 H 1.08993 * 109.99743 * 120.35447 * 27 11 10 50 50 H 1.08998 * 109.15775 * 302.50075 * 30 4 2 51 51 H 1.08992 * 109.16254 * 61.74252 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5844 -1.7753 1.1221 6 6 1.6109 -0.0719 2.4496 7 6 2.0900 -0.9468 3.6074 8 6 3.5803 -1.1677 3.5610 9 1 3.8622 -1.8824 4.3342 10 6 4.3872 0.1262 3.7688 11 7 5.7302 -0.1998 3.2443 12 6 6.8787 0.4157 3.5884 13 8 7.9304 0.0629 3.0905 14 7 6.8613 1.4231 4.4837 15 6 8.1097 2.0926 4.8573 16 6 7.8176 3.1730 5.8664 17 8 6.6787 3.3653 6.2367 18 7 8.8218 3.9264 6.3568 19 6 8.5561 4.9097 7.2744 20 1 7.5421 5.0809 7.6041 21 6 9.5915 5.6861 7.7803 22 7 9.3369 6.6282 8.6602 23 14 11.3457 5.3895 7.2106 24 1 11.6284 6.2311 6.0203 25 1 12.2873 5.7443 8.3026 26 1 11.5155 3.9575 6.8561 27 6 5.6054 -1.3080 2.2839 28 6 4.0961 -1.6657 2.1981 29 1 3.9306 -2.7329 2.0499 30 6 3.5178 -0.8299 1.0546 31 1 -0.3633 0.4513 0.9233 32 1 -0.3633 0.5739 -0.8525 33 1 -0.3633 -1.0252 -0.0708 34 1 3.0828 1.3432 -0.0709 35 1 1.5898 1.9163 -0.8525 36 1 1.7044 1.8724 0.9233 37 1 0.5284 0.0456 2.5004 38 1 2.0901 0.9055 2.5041 39 1 1.8317 -0.4626 4.5492 40 1 1.5859 -1.9119 3.5557 41 1 4.4415 0.3764 4.8283 42 1 3.9463 0.9485 3.2053 43 1 6.0222 1.7052 4.8800 44 1 8.7957 1.3657 5.2921 45 1 8.5636 2.5358 3.9710 46 1 9.7327 3.7729 6.0604 47 1 10.0596 7.1705 9.0132 48 1 6.1728 -2.1701 2.6346 49 1 5.9700 -0.9960 1.3053 50 1 3.8057 -1.2773 0.1033 51 1 3.9219 0.1808 1.1114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352063652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:43 Heat of formation + Delta-G solvation = -52.572142 kcal Electronic energy + Delta-G solvation = -30255.867412 eV Core-core repulsion = 26190.229683 eV Total energy + Delta-G solvation = -4065.637728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11868 -39.52824 -38.41368 -37.43649 -34.51303 -34.24366 -33.73768 -32.03142 -31.78405 -30.23847 -28.23839 -27.78206 -27.27851 -24.96340 -24.40286 -23.91015 -22.11233 -20.75292 -19.90226 -19.63277 -18.97553 -18.78094 -17.86324 -16.79794 -16.08416 -15.91186 -15.50454 -15.41019 -15.23085 -15.07016 -14.97131 -14.50759 -14.34859 -14.14999 -13.81450 -13.50827 -13.30520 -13.14202 -13.02719 -12.88249 -12.54053 -12.45533 -12.29289 -12.15632 -12.11392 -12.00911 -11.97961 -11.77771 -11.55068 -11.26336 -11.23490 -10.66003 -10.64249 -10.60082 -10.48285 -10.08099 -10.04651 -9.70087 -8.99204 -8.77084 -8.59218 -8.46891 -8.30575 -6.41113 -3.93711 2.62048 2.99874 3.04630 3.12600 3.31668 3.55776 3.57702 3.93878 4.03554 4.12723 4.22774 4.41660 4.56703 4.59604 4.70361 4.74274 4.84490 4.94400 5.03040 5.08882 5.09527 5.14026 5.15200 5.19376 5.23144 5.32432 5.41186 5.44953 5.50946 5.56762 5.64834 5.65575 5.67615 5.70403 5.77620 5.80030 5.82932 5.85853 5.87796 5.98069 6.05970 6.20498 6.65191 6.68950 6.71663 7.12127 7.44656 7.99919 8.11263 8.44114 8.73270 8.81335 9.29595 9.63308 10.71028 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.002240 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.774683 B =12497.530898 C =13049.537645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.015 3.985 4 C 0.086 3.914 5 H 0.084 0.916 6 C -0.156 4.156 7 C -0.100 4.100 8 C -0.094 4.094 9 H 0.081 0.919 10 C 0.103 3.897 11 N -0.638 5.638 12 C 0.723 3.277 13 O -0.596 6.596 14 N -0.724 5.724 15 C 0.126 3.874 16 C 0.439 3.561 17 O -0.580 6.580 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.121 0.879 21 C 0.045 3.955 22 N -0.875 5.875 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C 0.131 3.869 28 C -0.090 4.090 29 H 0.099 0.901 30 C -0.109 4.109 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.407 0.593 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.375 0.625 47 H 0.276 0.724 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.392 -17.140 -15.750 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.133 4.133 4 C -0.023 4.023 5 H 0.102 0.898 6 C -0.195 4.195 7 C -0.139 4.139 8 C -0.113 4.113 9 H 0.099 0.901 10 C -0.020 4.020 11 N -0.377 5.377 12 C 0.425 3.575 13 O -0.475 6.475 14 N -0.382 5.382 15 C -0.003 4.003 16 C 0.225 3.775 17 O -0.464 6.464 18 N -0.214 5.214 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.514 5.514 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C 0.008 3.992 28 C -0.109 4.109 29 H 0.117 0.883 30 C -0.147 4.147 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.245 0.755 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.208 0.792 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.030 -17.228 -16.125 27.977 hybrid contribution 0.806 0.590 0.721 1.231 sum -14.224 -16.639 -15.405 26.767 Atomic orbital electron populations 1.22402 0.87569 1.02128 1.00609 1.62230 1.07742 1.14128 1.42180 1.22483 1.01251 0.88890 1.00636 1.21719 0.95460 0.97521 0.87574 0.89826 1.22307 1.01082 1.00144 0.95997 1.20803 0.93938 1.00385 0.98760 1.21436 0.95041 0.97168 0.97623 0.90062 1.22255 0.82496 0.97576 0.99637 1.47530 1.05540 1.37793 1.46801 1.15327 0.82600 0.79675 0.79923 1.90905 1.29182 1.68441 1.58929 1.44770 1.11601 1.36114 1.45669 1.20811 0.86177 0.94828 0.98469 1.19649 0.86146 0.85489 0.86212 1.90528 1.21083 1.71634 1.63183 1.42118 1.07795 1.32014 1.39475 1.19431 0.98163 1.08831 1.17389 0.86109 1.25062 0.98602 0.95910 0.96339 1.69611 1.33367 1.19985 1.28393 0.86673 0.84433 0.78895 0.79525 1.19376 1.19980 1.19187 1.22051 0.95529 0.88948 0.92690 1.22240 0.93806 1.00295 0.94549 0.88288 1.21656 0.93960 1.00842 0.98192 0.95209 0.91530 0.91495 0.90974 0.91621 0.95025 0.91558 0.91154 0.91343 0.91375 0.90533 0.91369 0.75488 0.89886 0.89867 0.79215 0.91386 0.91725 0.91325 0.90830 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.33 60.07 0.56 0.69 16 2 N -0.54 -4.05 5.02 -243.22 -1.22 -5.27 16 3 C 0.02 0.12 8.80 60.06 0.53 0.65 16 4 C 0.09 0.58 2.22 -67.75 -0.15 0.43 16 5 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 6 C -0.16 -1.04 4.33 -26.65 -0.12 -1.15 16 7 C -0.10 -0.63 5.37 -27.96 -0.15 -0.78 16 8 C -0.09 -0.70 2.81 -90.77 -0.26 -0.95 16 9 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 10 C 0.10 1.04 5.49 -2.85 -0.02 1.03 16 11 N -0.64 -8.12 3.34 -175.78 -0.59 -8.71 16 12 C 0.72 12.06 8.49 -86.91 -0.74 11.32 16 13 O -0.60 -11.77 16.67 5.29 0.09 -11.69 16 14 N -0.72 -12.29 5.49 -66.41 -0.36 -12.66 16 15 C 0.13 2.26 6.15 -5.19 -0.03 2.23 16 16 C 0.44 9.77 7.85 -10.99 -0.09 9.69 16 17 O -0.58 -14.71 15.24 5.55 0.08 -14.63 16 18 N -0.58 -13.51 5.09 -10.97 -0.06 -13.56 16 19 C -0.31 -8.55 10.16 -14.93 -0.15 -8.71 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 22 N -0.87 -24.99 13.96 55.49 0.77 -24.22 16 23 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 C 0.13 1.35 6.17 -2.43 -0.01 1.34 16 28 C -0.09 -0.64 3.61 -88.86 -0.32 -0.96 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 C -0.11 -0.80 3.64 -26.94 -0.10 -0.90 16 31 H 0.03 0.18 6.39 -51.93 -0.33 -0.15 16 32 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.59 6.36 -51.93 -0.33 0.26 16 35 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.03 0.24 6.40 -51.93 -0.33 -0.09 16 37 H 0.07 0.43 6.41 -51.93 -0.33 0.09 16 38 H 0.07 0.55 5.33 -51.93 -0.28 0.27 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.81 7.36 -51.93 -0.38 0.43 16 42 H 0.07 0.68 6.16 -51.93 -0.32 0.36 16 43 H 0.41 6.83 5.95 -40.82 -0.24 6.59 16 44 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 47 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 49 H 0.07 0.75 7.74 -51.93 -0.40 0.34 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.07 0.61 5.51 -51.93 -0.29 0.33 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -32.92 385.90 -9.41 -42.33 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -8.10 Total: 13.17 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -1.14 Total: 15.04 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -1.45 Total: -64.42 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: 0.17 Total: -26.31 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.92 -9.41 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352063652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.239 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds