Wall clock time and date at job start Tue Mar 31 2020 20:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00011 * 2 1 4 4 C 1.46900 * 110.99854 * 123.95460 * 2 1 3 5 5 H 1.08993 * 109.67896 * 55.50715 * 4 2 1 6 6 C 1.53332 * 109.67630 * 294.99490 * 4 2 1 7 7 C 1.52826 * 108.08871 * 176.10511 * 6 4 2 8 8 C 1.50731 * 111.74499 * 58.92912 * 7 6 4 9 9 H 1.09001 * 109.26534 * 186.23914 * 8 7 6 10 10 C 1.53898 * 113.02082 * 65.13007 * 8 7 6 11 11 N 1.47821 * 104.06339 * 198.52803 * 10 8 7 12 12 C 1.34776 * 125.65321 * 203.35103 * 11 10 8 13 13 O 1.21585 * 120.00029 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99437 * 359.97438 * 12 11 10 15 15 C 1.46506 * 119.99535 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.46697 * 180.02562 * 15 14 12 17 17 O 1.21292 * 120.00501 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99836 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00417 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99661 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00393 * 179.97438 * 19 18 16 22 22 N 1.31403 * 120.00399 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 119.99780 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47036 * 90.00388 * 23 21 19 25 25 H 1.48498 * 109.46727 * 209.99889 * 23 21 19 26 26 H 1.48497 * 109.46949 * 330.00168 * 23 21 19 27 27 C 1.47175 * 108.69991 * 23.35076 * 11 10 8 28 28 C 1.54001 * 113.94417 * 308.69126 * 8 7 6 29 29 H 1.09000 * 112.70864 * 280.88765 * 28 8 7 30 30 C 1.52594 * 109.70644 * 176.03536 * 4 2 1 31 31 H 1.09000 * 109.46950 * 296.04737 * 1 2 3 32 32 H 1.08999 * 109.46948 * 56.04906 * 1 2 3 33 33 H 1.09002 * 109.46888 * 176.04883 * 1 2 3 34 34 H 1.09003 * 109.47251 * 183.95550 * 3 2 1 35 35 H 1.09005 * 109.47043 * 303.95344 * 3 2 1 36 36 H 1.08999 * 109.47552 * 63.95266 * 3 2 1 37 37 H 1.09004 * 109.73702 * 56.45701 * 6 4 2 38 38 H 1.08992 * 109.78364 * 295.77613 * 6 4 2 39 39 H 1.08996 * 109.02490 * 179.51341 * 7 6 4 40 40 H 1.09004 * 109.02484 * 298.34420 * 7 6 4 41 41 H 1.08997 * 110.51302 * 79.88855 * 10 8 7 42 42 H 1.09000 * 110.62837 * 317.22885 * 10 8 7 43 43 H 0.96992 * 120.00074 * 359.97438 * 14 12 11 44 44 H 1.08992 * 109.46837 * 300.00204 * 15 14 12 45 45 H 1.09002 * 109.46926 * 60.00206 * 15 14 12 46 46 H 0.97008 * 119.99979 * 359.97438 * 18 16 15 47 47 H 0.96998 * 120.00715 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.96206 * 241.58263 * 27 11 10 49 49 H 1.08993 * 109.99743 * 120.35447 * 27 11 10 50 50 H 1.08998 * 109.15775 * 302.50075 * 30 4 2 51 51 H 1.08992 * 109.16254 * 61.74252 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5844 -1.7753 1.1221 6 6 1.6109 -0.0719 2.4496 7 6 2.0900 -0.9468 3.6074 8 6 3.5803 -1.1677 3.5610 9 1 3.8622 -1.8824 4.3342 10 6 4.3872 0.1262 3.7688 11 7 5.7302 -0.1998 3.2443 12 6 6.8787 0.4157 3.5884 13 8 7.9304 0.0629 3.0905 14 7 6.8613 1.4231 4.4837 15 6 8.1097 2.0926 4.8573 16 6 7.8176 3.1730 5.8664 17 8 6.6787 3.3653 6.2367 18 7 8.8218 3.9264 6.3568 19 6 8.5561 4.9097 7.2744 20 1 7.5421 5.0809 7.6041 21 6 9.5915 5.6861 7.7803 22 7 9.3369 6.6282 8.6602 23 14 11.3457 5.3895 7.2106 24 1 11.6284 6.2311 6.0203 25 1 12.2873 5.7443 8.3026 26 1 11.5155 3.9575 6.8561 27 6 5.6054 -1.3080 2.2839 28 6 4.0961 -1.6657 2.1981 29 1 3.9306 -2.7329 2.0499 30 6 3.5178 -0.8299 1.0546 31 1 -0.3633 0.4513 0.9233 32 1 -0.3633 0.5739 -0.8525 33 1 -0.3633 -1.0252 -0.0708 34 1 3.0828 1.3432 -0.0709 35 1 1.5898 1.9163 -0.8525 36 1 1.7044 1.8724 0.9233 37 1 0.5284 0.0456 2.5004 38 1 2.0901 0.9055 2.5041 39 1 1.8317 -0.4626 4.5492 40 1 1.5859 -1.9119 3.5557 41 1 4.4415 0.3764 4.8283 42 1 3.9463 0.9485 3.2053 43 1 6.0222 1.7052 4.8800 44 1 8.7957 1.3657 5.2921 45 1 8.5636 2.5358 3.9710 46 1 9.7327 3.7729 6.0604 47 1 10.0596 7.1705 9.0132 48 1 6.1728 -2.1701 2.6346 49 1 5.9700 -0.9960 1.3053 50 1 3.8057 -1.2773 0.1033 51 1 3.9219 0.1808 1.1114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352063652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:42 Heat of formation + Delta-G solvation = -77.634170 kcal Electronic energy + Delta-G solvation = -30256.954183 eV Core-core repulsion = 26190.229683 eV Total energy + Delta-G solvation = -4066.724499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96652 -40.80341 -39.99291 -38.27185 -36.31562 -35.38222 -35.02722 -33.85325 -32.71458 -31.02936 -29.34106 -28.70407 -28.07254 -26.46332 -25.16315 -24.98633 -22.82851 -21.56751 -21.38885 -21.04820 -20.54161 -19.61364 -19.26116 -17.69295 -17.43777 -17.08959 -16.85591 -16.68713 -16.41200 -16.03069 -15.86454 -15.62549 -15.53154 -15.11230 -14.90237 -14.58043 -14.40527 -14.28542 -14.24090 -14.03160 -13.84694 -13.61338 -13.48837 -13.10255 -12.97967 -12.89252 -12.60542 -12.58203 -12.46222 -12.42886 -12.18870 -12.01366 -11.90619 -11.59980 -11.39063 -11.25815 -11.20799 -11.07905 -10.68430 -10.38325 -10.30964 -9.54560 -9.14791 -8.46974 -6.09069 1.30106 1.33038 1.41747 1.46382 1.75870 2.03678 2.19236 2.67083 3.00140 3.01934 3.09137 3.45775 3.47747 3.79500 3.95522 3.97566 4.10694 4.14827 4.26509 4.34994 4.37192 4.37952 4.40365 4.42901 4.50472 4.55477 4.60192 4.63656 4.68127 4.76869 4.79168 4.83787 5.04074 5.05636 5.06900 5.10712 5.16883 5.22369 5.24214 5.25098 5.27931 5.43605 5.47324 5.50427 5.85901 5.95712 6.13028 6.19324 6.46939 6.75883 6.84195 7.25780 7.43613 7.75466 8.69331 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.002240 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.774683 B =12497.530898 C =13049.537645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.551 5.551 3 C 0.018 3.982 4 C 0.090 3.910 5 H 0.096 0.904 6 C -0.152 4.152 7 C -0.095 4.095 8 C -0.084 4.084 9 H 0.087 0.913 10 C 0.098 3.902 11 N -0.634 5.634 12 C 0.720 3.280 13 O -0.628 6.628 14 N -0.727 5.727 15 C 0.137 3.863 16 C 0.446 3.554 17 O -0.614 6.614 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.064 0.936 21 C -0.007 4.007 22 N -0.925 5.925 23 Si 0.958 3.042 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.233 1.233 27 C 0.125 3.875 28 C -0.073 4.073 29 H 0.127 0.873 30 C -0.103 4.103 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.407 0.593 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.392 0.608 47 H 0.282 0.718 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.019 -19.541 -17.262 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.130 4.130 4 C -0.019 4.019 5 H 0.114 0.886 6 C -0.191 4.191 7 C -0.134 4.134 8 C -0.103 4.103 9 H 0.105 0.895 10 C -0.024 4.024 11 N -0.371 5.371 12 C 0.421 3.579 13 O -0.510 6.510 14 N -0.385 5.385 15 C 0.009 3.991 16 C 0.234 3.766 17 O -0.500 6.500 18 N -0.217 5.217 19 C -0.460 4.460 20 H 0.082 0.918 21 C -0.208 4.208 22 N -0.564 5.564 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.157 1.157 27 C 0.002 3.998 28 C -0.092 4.092 29 H 0.145 0.855 30 C -0.141 4.141 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.245 0.755 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.228 0.772 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.704 -19.661 -17.657 30.242 hybrid contribution 0.525 1.347 1.180 1.866 sum -14.179 -18.314 -16.477 28.425 Atomic orbital electron populations 1.22435 0.86660 1.02818 1.00768 1.62243 1.08635 1.13835 1.42595 1.22429 1.00683 0.89313 1.00578 1.21709 0.94804 0.97988 0.87360 0.88583 1.22256 1.01225 0.99437 0.96199 1.20784 0.92852 1.01284 0.98461 1.21417 0.95515 0.95485 0.97908 0.89490 1.22432 0.81602 0.99320 0.99038 1.47615 1.05384 1.37547 1.46577 1.15434 0.83249 0.79571 0.79631 1.90872 1.30695 1.69396 1.60061 1.44752 1.11219 1.36442 1.46066 1.20710 0.87007 0.93698 0.97671 1.20440 0.85278 0.85291 0.85635 1.90516 1.22727 1.72566 1.64226 1.41916 1.08988 1.31563 1.39187 1.19020 0.96292 1.11205 1.19479 0.91809 1.26058 1.04086 0.94825 0.95790 1.69769 1.35517 1.21237 1.29898 0.85456 0.76653 0.80848 0.79251 1.18067 1.19720 1.15666 1.22272 0.97917 0.87986 0.91624 1.22241 0.91112 1.01706 0.94143 0.85542 1.21583 0.94527 0.99744 0.98269 0.95118 0.91336 0.90526 0.91934 0.91262 0.95464 0.91050 0.92772 0.91420 0.89377 0.91258 0.91446 0.75503 0.88063 0.88052 0.77209 0.90877 0.91728 0.92102 0.90848 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.33 127.69 1.19 1.41 16 2 N -0.55 -7.47 5.02 -923.41 -4.63 -12.10 16 3 C 0.02 0.27 8.80 127.69 1.12 1.39 16 4 C 0.09 1.03 2.22 44.89 0.10 1.13 16 5 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 6 C -0.15 -1.76 4.33 30.65 0.13 -1.63 16 7 C -0.10 -0.96 5.37 29.80 0.16 -0.79 16 8 C -0.08 -1.08 2.81 -10.89 -0.03 -1.11 16 9 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 10 C 0.10 1.92 5.49 86.43 0.47 2.40 16 11 N -0.63 -15.74 3.34 -828.30 -2.77 -18.50 16 12 C 0.72 23.59 8.49 179.05 1.52 25.11 16 13 O -0.63 -24.35 16.67 -3.98 -0.07 -24.41 16 14 N -0.73 -24.36 5.49 -482.29 -2.65 -27.01 16 15 C 0.14 4.77 6.15 85.63 0.53 5.30 16 16 C 0.45 19.88 7.85 87.66 0.69 20.57 16 17 O -0.61 -32.09 15.24 -3.07 -0.05 -32.14 16 18 N -0.58 -26.87 5.09 -306.99 -1.56 -28.43 16 19 C -0.33 -18.89 10.16 84.04 0.85 -18.03 16 20 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 21 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 22 N -0.92 -54.38 13.96 21.66 0.30 -54.07 16 23 Si 0.96 38.35 27.74 68.60 1.90 40.25 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 27 C 0.12 2.41 6.17 87.06 0.54 2.95 16 28 C -0.07 -0.88 3.61 -9.65 -0.03 -0.91 16 29 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 30 C -0.10 -1.36 3.64 30.46 0.11 -1.25 16 31 H 0.03 0.32 6.39 -2.39 -0.02 0.30 16 32 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 1.03 6.36 -2.39 -0.02 1.01 16 35 H 0.07 0.94 8.12 -2.38 -0.02 0.92 16 36 H 0.03 0.42 6.40 -2.39 -0.02 0.40 16 37 H 0.07 0.78 6.41 -2.38 -0.02 0.76 16 38 H 0.05 0.81 5.33 -2.39 -0.01 0.80 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 1.46 7.36 -2.39 -0.02 1.45 16 42 H 0.07 1.35 6.16 -2.39 -0.01 1.33 16 43 H 0.41 13.76 5.95 -92.71 -0.55 13.21 16 44 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.39 15.39 5.76 -92.70 -0.53 14.86 16 47 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 48 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 49 H 0.06 1.29 7.74 -2.39 -0.02 1.27 16 50 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.05 0.86 5.51 -2.39 -0.01 0.84 16 Total: -1.00 -74.58 385.90 -1.88 -76.46 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.19 Total: 43.36 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 7.82 Total: 36.59 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -11.31 Total: -140.12 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -0.11 Total: -56.55 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.90 Total: 40.25 kcal Total: -74.58 -1.88 -76.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352063652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.171 kcal (2) G-P(sol) polarization free energy of solvation -74.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds