Wall clock time and date at job start Tue Mar 31 2020 20:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 110.99849 * 2 1 4 4 C 1.46896 * 111.00218 * 123.95332 * 2 1 3 5 5 H 1.08999 * 109.03543 * 297.02776 * 4 2 1 6 6 C 1.52543 * 108.91247 * 178.13441 * 4 2 1 7 7 C 1.53812 * 111.70089 * 293.39681 * 6 4 2 8 8 C 1.51619 * 107.10506 * 302.59048 * 7 6 4 9 9 H 1.08999 * 110.50759 * 304.73469 * 8 7 6 10 10 C 1.53068 * 116.66500 * 177.32584 * 8 7 6 11 11 N 1.49753 * 102.92140 * 204.82419 * 10 8 7 12 12 C 1.34780 * 125.30351 * 203.81492 * 11 10 8 13 13 O 1.21580 * 120.00285 * 178.95408 * 12 11 10 14 14 N 1.34781 * 119.99902 * 358.94806 * 12 11 10 15 15 C 1.46500 * 120.00014 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.46799 * 179.97438 * 15 14 12 17 17 O 1.21296 * 120.00516 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99822 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00123 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99708 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00186 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99818 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00073 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47217 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47141 * 119.99761 * 23 21 19 26 26 H 1.48499 * 109.47160 * 239.99457 * 23 21 19 27 27 C 1.48248 * 108.91033 * 22.90980 * 11 10 8 28 28 C 1.52322 * 105.85795 * 4.07371 * 27 11 10 29 29 H 1.08999 * 110.21914 * 87.80581 * 28 27 11 30 30 C 1.51436 * 117.46688 * 214.64504 * 28 27 11 31 31 H 1.09002 * 109.47450 * 296.04155 * 1 2 3 32 32 H 1.09000 * 109.47368 * 56.04529 * 1 2 3 33 33 H 1.09003 * 109.46906 * 176.04812 * 1 2 3 34 34 H 1.08996 * 109.47172 * 190.82854 * 3 2 1 35 35 H 1.08996 * 109.47034 * 310.83687 * 3 2 1 36 36 H 1.08999 * 109.46649 * 70.83087 * 3 2 1 37 37 H 1.08993 * 108.96186 * 172.87254 * 6 4 2 38 38 H 1.09001 * 109.10547 * 54.01827 * 6 4 2 39 39 H 1.09006 * 109.94178 * 183.16665 * 7 6 4 40 40 H 1.09004 * 109.94232 * 62.01623 * 7 6 4 41 41 H 1.09004 * 110.62778 * 322.62797 * 10 8 7 42 42 H 1.08996 * 110.62391 * 85.64407 * 10 8 7 43 43 H 0.97001 * 119.99851 * 359.97438 * 14 12 11 44 44 H 1.08996 * 109.46936 * 299.99891 * 15 14 12 45 45 H 1.08994 * 109.47194 * 60.00003 * 15 14 12 46 46 H 0.97004 * 119.99846 * 0.02562 * 18 16 15 47 47 H 0.96991 * 119.99811 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.17069 * 244.97178 * 27 11 10 49 49 H 1.09005 * 110.22959 * 123.20261 * 27 11 10 50 50 H 1.09003 * 109.93764 * 298.19211 * 30 28 27 51 51 H 1.09000 * 109.93905 * 59.33802 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 1 1.6857 -0.2837 2.0647 6 6 3.5191 -0.7740 1.0654 7 6 4.0266 -1.5612 -0.1547 8 6 3.4634 -2.9646 -0.0457 9 1 3.7311 -3.4102 0.9124 10 6 3.7845 -3.9248 -1.1936 11 7 2.6576 -4.9091 -1.1322 12 6 2.6981 -6.1702 -1.6061 13 8 1.7296 -6.8955 -1.4878 14 7 3.8124 -6.6272 -2.2112 15 6 3.8563 -7.9978 -2.7268 16 6 5.2028 -8.2563 -3.3520 17 8 6.0434 -7.3819 -3.3652 18 7 5.4736 -9.4595 -3.8956 19 6 6.6988 -9.6949 -4.4640 20 1 7.4469 -8.9160 -4.4765 21 6 6.9777 -10.9352 -5.0249 22 7 6.0672 -11.8828 -5.0102 23 14 8.6468 -11.2557 -5.7999 24 1 9.4866 -10.0361 -5.6886 25 1 9.3118 -12.3812 -5.0954 26 1 8.4687 -11.6045 -7.2323 27 6 1.5043 -4.2769 -0.4480 28 6 1.9184 -2.8358 -0.1798 29 1 1.6713 -2.2074 -1.0354 30 6 1.4161 -2.1904 1.0948 31 1 -0.3634 0.4512 0.9233 32 1 -0.3634 0.5740 -0.8524 33 1 -0.3633 -1.0253 -0.0708 34 1 3.0679 1.3490 -0.1931 35 1 1.4982 1.9515 -0.7775 36 1 1.8105 1.8316 0.9707 37 1 3.9142 -1.2309 1.9726 38 1 3.8787 0.2530 1.0005 39 1 5.1161 -1.5962 -0.1477 40 1 3.6760 -1.0902 -1.0731 41 1 3.7753 -3.3988 -2.1483 42 1 4.7470 -4.4097 -1.0307 43 1 4.5849 -6.0483 -2.3060 44 1 3.6946 -8.6991 -1.9083 45 1 3.0766 -8.1289 -3.4770 46 1 4.8015 -10.1589 -3.8847 47 1 6.2620 -12.7486 -5.4014 48 1 1.2974 -4.7897 0.4913 49 1 0.6246 -4.3018 -1.0912 50 1 0.3269 -2.1486 1.0860 51 1 1.7590 -2.7587 1.9594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352063660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:47 Heat of formation + Delta-G solvation = -53.501295 kcal Electronic energy + Delta-G solvation = -29887.173415 eV Core-core repulsion = 25821.495396 eV Total energy + Delta-G solvation = -4065.678019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87305 -39.44215 -38.19585 -37.20875 -34.37564 -34.21572 -33.58722 -31.99765 -31.33733 -30.33962 -28.51021 -27.34271 -27.07332 -25.05430 -24.14125 -23.68139 -21.48549 -21.04092 -19.72824 -19.53408 -19.49191 -18.19314 -17.66391 -16.41039 -16.11276 -15.83254 -15.65843 -15.41439 -15.34277 -14.80176 -14.63208 -14.37212 -14.27970 -14.00153 -13.81314 -13.42448 -13.19128 -13.05806 -12.85668 -12.81547 -12.43050 -12.32612 -12.24497 -12.18859 -12.02448 -11.83980 -11.67313 -11.60398 -11.41421 -11.12657 -11.09972 -10.81418 -10.58174 -10.38662 -10.29634 -10.07027 -9.88334 -9.61564 -8.84720 -8.68502 -8.58278 -8.33692 -8.06408 -6.48319 -3.90133 2.72142 3.12425 3.24293 3.31142 3.48000 3.52536 3.79221 3.98325 4.10384 4.26052 4.32779 4.48970 4.66479 4.73469 4.78714 4.90276 4.94868 4.99245 5.04084 5.16424 5.17528 5.20519 5.24284 5.29275 5.34380 5.37940 5.45183 5.46445 5.49345 5.56620 5.65728 5.72414 5.74996 5.77356 5.88055 5.95558 5.97739 6.06053 6.09799 6.12254 6.25878 6.33212 6.65282 6.67322 6.84529 7.26248 7.49229 7.96165 8.26202 8.49005 8.88930 9.08054 9.43362 9.91346 10.68755 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.001946 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.387005 B =14387.624952 C =15077.440418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.538 5.538 3 C 0.022 3.978 4 C 0.087 3.913 5 H 0.039 0.961 6 C -0.113 4.113 7 C -0.097 4.097 8 C -0.103 4.103 9 H 0.080 0.920 10 C 0.109 3.891 11 N -0.643 5.643 12 C 0.722 3.278 13 O -0.598 6.598 14 N -0.723 5.723 15 C 0.128 3.872 16 C 0.430 3.570 17 O -0.598 6.598 18 N -0.550 5.550 19 C -0.303 4.303 20 H 0.106 0.894 21 C 0.024 3.976 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.141 3.859 28 C -0.100 4.100 29 H 0.099 0.901 30 C -0.099 4.099 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.406 0.594 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.273 0.727 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.751 24.457 12.869 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.127 4.127 4 C -0.021 4.021 5 H 0.057 0.943 6 C -0.150 4.150 7 C -0.135 4.135 8 C -0.122 4.122 9 H 0.099 0.901 10 C -0.014 4.014 11 N -0.383 5.383 12 C 0.423 3.577 13 O -0.477 6.477 14 N -0.381 5.381 15 C 0.000 4.000 16 C 0.216 3.784 17 O -0.484 6.484 18 N -0.185 5.185 19 C -0.433 4.433 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C 0.018 3.982 28 C -0.119 4.119 29 H 0.117 0.883 30 C -0.137 4.137 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.244 0.756 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.721 23.950 12.378 28.659 hybrid contribution 0.455 -0.048 0.315 0.556 sum -9.266 23.902 12.694 28.606 Atomic orbital electron populations 1.22482 0.87532 1.02685 1.00278 1.62009 1.07679 1.13417 1.43164 1.22438 1.01371 0.88806 1.00046 1.21729 0.95107 0.93977 0.91260 0.94290 1.21637 0.93790 1.00786 0.98833 1.21224 0.99714 0.93569 0.98956 1.22046 0.95962 0.95387 0.98798 0.90147 1.22241 0.90272 0.90063 0.98791 1.48366 1.15755 1.11307 1.62845 1.15383 0.83359 0.80398 0.78534 1.90895 1.36055 1.56190 1.64608 1.44787 1.16022 1.15276 1.62041 1.20777 0.97294 0.82821 0.99106 1.19776 0.88973 0.84371 0.85302 1.90486 1.48974 1.45065 1.63893 1.41797 1.15569 1.11358 1.49802 1.19775 0.91456 0.98798 1.33242 0.87647 1.25329 0.99645 0.95259 0.97606 1.69627 1.34256 1.04647 1.44986 0.85756 0.81257 0.78559 0.78494 1.19156 1.20652 1.20650 1.21371 0.88349 0.91732 0.96723 1.21809 0.95476 0.94940 0.99661 0.88327 1.21420 1.00541 0.94389 0.97369 0.95894 0.91464 0.90678 0.90909 0.91552 0.95855 0.91706 0.91574 0.91781 0.90428 0.91071 0.90345 0.75600 0.90072 0.90056 0.77014 0.91681 0.92040 0.91522 0.91147 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.10 60.06 0.55 0.65 16 2 N -0.54 -3.46 3.67 -242.93 -0.89 -4.35 16 3 C 0.02 0.12 8.99 60.07 0.54 0.66 16 4 C 0.09 0.54 2.19 -67.51 -0.15 0.40 16 5 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 6 C -0.11 -0.68 5.04 -26.54 -0.13 -0.81 16 7 C -0.10 -0.68 5.56 -27.01 -0.15 -0.83 16 8 C -0.10 -0.87 2.44 -89.89 -0.22 -1.09 16 9 H 0.08 0.71 8.02 -51.93 -0.42 0.29 16 10 C 0.11 1.19 6.26 -2.19 -0.01 1.18 16 11 N -0.64 -8.98 3.41 -175.64 -0.60 -9.58 16 12 C 0.72 12.99 8.50 -86.91 -0.74 12.25 16 13 O -0.60 -12.67 16.69 5.30 0.09 -12.58 16 14 N -0.72 -13.22 5.49 -66.42 -0.36 -13.58 16 15 C 0.13 2.52 6.15 -5.20 -0.03 2.49 16 16 C 0.43 10.14 7.85 -10.98 -0.09 10.05 16 17 O -0.60 -15.57 15.24 5.54 0.08 -15.49 16 18 N -0.55 -13.91 5.29 -10.96 -0.06 -13.97 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 20 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 22 N -0.89 -24.17 13.05 55.50 0.72 -23.45 16 23 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.14 1.61 6.62 -3.43 -0.02 1.59 16 28 C -0.10 -0.83 2.29 -90.37 -0.21 -1.04 16 29 H 0.10 0.90 7.14 -51.93 -0.37 0.53 16 30 C -0.10 -0.66 4.81 -27.08 -0.13 -0.79 16 31 H 0.02 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 0.36 8.05 -51.93 -0.42 -0.05 16 33 H 0.07 0.44 6.11 -51.93 -0.32 0.12 16 34 H 0.07 0.38 6.49 -51.93 -0.34 0.05 16 35 H 0.07 0.34 8.00 -51.93 -0.42 -0.08 16 36 H 0.02 0.12 8.11 -51.93 -0.42 -0.30 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.37 6.10 -51.93 -0.32 0.05 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.89 7.42 -51.93 -0.39 0.50 16 43 H 0.41 7.26 5.96 -40.82 -0.24 7.02 16 44 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.40 9.64 7.90 -40.82 -0.32 9.32 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.06 0.71 8.08 -51.93 -0.42 0.30 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.44 6.13 -51.93 -0.32 0.12 16 51 H 0.07 0.47 8.03 -51.93 -0.42 0.05 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -32.24 394.70 -9.55 -41.79 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -8.42 Total: 12.78 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -1.04 Total: 16.76 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -1.19 Total: -64.92 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: 0.17 Total: -28.07 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.24 -9.55 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352063660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.710 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds