Wall clock time and date at job start Tue Mar 31 2020 20:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 110.99849 * 2 1 4 4 C 1.46896 * 111.00218 * 123.95332 * 2 1 3 5 5 H 1.08999 * 109.03543 * 297.02776 * 4 2 1 6 6 C 1.52543 * 108.91247 * 178.13441 * 4 2 1 7 7 C 1.53812 * 111.70089 * 293.39681 * 6 4 2 8 8 C 1.51619 * 107.10506 * 302.59048 * 7 6 4 9 9 H 1.08999 * 110.50759 * 304.73469 * 8 7 6 10 10 C 1.53068 * 116.66500 * 177.32584 * 8 7 6 11 11 N 1.49753 * 102.92140 * 204.82419 * 10 8 7 12 12 C 1.34780 * 125.30351 * 203.81492 * 11 10 8 13 13 O 1.21580 * 120.00285 * 178.95408 * 12 11 10 14 14 N 1.34781 * 119.99902 * 358.94806 * 12 11 10 15 15 C 1.46500 * 120.00014 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.46799 * 179.97438 * 15 14 12 17 17 O 1.21296 * 120.00516 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99822 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00123 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99708 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00186 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99818 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00073 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47217 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47141 * 119.99761 * 23 21 19 26 26 H 1.48499 * 109.47160 * 239.99457 * 23 21 19 27 27 C 1.48248 * 108.91033 * 22.90980 * 11 10 8 28 28 C 1.52322 * 105.85795 * 4.07371 * 27 11 10 29 29 H 1.08999 * 110.21914 * 87.80581 * 28 27 11 30 30 C 1.51436 * 117.46688 * 214.64504 * 28 27 11 31 31 H 1.09002 * 109.47450 * 296.04155 * 1 2 3 32 32 H 1.09000 * 109.47368 * 56.04529 * 1 2 3 33 33 H 1.09003 * 109.46906 * 176.04812 * 1 2 3 34 34 H 1.08996 * 109.47172 * 190.82854 * 3 2 1 35 35 H 1.08996 * 109.47034 * 310.83687 * 3 2 1 36 36 H 1.08999 * 109.46649 * 70.83087 * 3 2 1 37 37 H 1.08993 * 108.96186 * 172.87254 * 6 4 2 38 38 H 1.09001 * 109.10547 * 54.01827 * 6 4 2 39 39 H 1.09006 * 109.94178 * 183.16665 * 7 6 4 40 40 H 1.09004 * 109.94232 * 62.01623 * 7 6 4 41 41 H 1.09004 * 110.62778 * 322.62797 * 10 8 7 42 42 H 1.08996 * 110.62391 * 85.64407 * 10 8 7 43 43 H 0.97001 * 119.99851 * 359.97438 * 14 12 11 44 44 H 1.08996 * 109.46936 * 299.99891 * 15 14 12 45 45 H 1.08994 * 109.47194 * 60.00003 * 15 14 12 46 46 H 0.97004 * 119.99846 * 0.02562 * 18 16 15 47 47 H 0.96991 * 119.99811 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.17069 * 244.97178 * 27 11 10 49 49 H 1.09005 * 110.22959 * 123.20261 * 27 11 10 50 50 H 1.09003 * 109.93764 * 298.19211 * 30 28 27 51 51 H 1.09000 * 109.93905 * 59.33802 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 1 1.6857 -0.2837 2.0647 6 6 3.5191 -0.7740 1.0654 7 6 4.0266 -1.5612 -0.1547 8 6 3.4634 -2.9646 -0.0457 9 1 3.7311 -3.4102 0.9124 10 6 3.7845 -3.9248 -1.1936 11 7 2.6576 -4.9091 -1.1322 12 6 2.6981 -6.1702 -1.6061 13 8 1.7296 -6.8955 -1.4878 14 7 3.8124 -6.6272 -2.2112 15 6 3.8563 -7.9978 -2.7268 16 6 5.2028 -8.2563 -3.3520 17 8 6.0434 -7.3819 -3.3652 18 7 5.4736 -9.4595 -3.8956 19 6 6.6988 -9.6949 -4.4640 20 1 7.4469 -8.9160 -4.4765 21 6 6.9777 -10.9352 -5.0249 22 7 6.0672 -11.8828 -5.0102 23 14 8.6468 -11.2557 -5.7999 24 1 9.4866 -10.0361 -5.6886 25 1 9.3118 -12.3812 -5.0954 26 1 8.4687 -11.6045 -7.2323 27 6 1.5043 -4.2769 -0.4480 28 6 1.9184 -2.8358 -0.1798 29 1 1.6713 -2.2074 -1.0354 30 6 1.4161 -2.1904 1.0948 31 1 -0.3634 0.4512 0.9233 32 1 -0.3634 0.5740 -0.8524 33 1 -0.3633 -1.0253 -0.0708 34 1 3.0679 1.3490 -0.1931 35 1 1.4982 1.9515 -0.7775 36 1 1.8105 1.8316 0.9707 37 1 3.9142 -1.2309 1.9726 38 1 3.8787 0.2530 1.0005 39 1 5.1161 -1.5962 -0.1477 40 1 3.6760 -1.0902 -1.0731 41 1 3.7753 -3.3988 -2.1483 42 1 4.7470 -4.4097 -1.0307 43 1 4.5849 -6.0483 -2.3060 44 1 3.6946 -8.6991 -1.9083 45 1 3.0766 -8.1289 -3.4770 46 1 4.8015 -10.1589 -3.8847 47 1 6.2620 -12.7486 -5.4014 48 1 1.2974 -4.7897 0.4913 49 1 0.6246 -4.3018 -1.0912 50 1 0.3269 -2.1486 1.0860 51 1 1.7590 -2.7587 1.9594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352063660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:46 Heat of formation + Delta-G solvation = -75.694327 kcal Electronic energy + Delta-G solvation = -29888.135777 eV Core-core repulsion = 25821.495396 eV Total energy + Delta-G solvation = -4066.640381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.75961 -40.72240 -39.89400 -38.09059 -36.24679 -35.32090 -34.97238 -33.37766 -32.68366 -31.18313 -29.48220 -28.55410 -27.76120 -26.54597 -25.33848 -24.31337 -22.26548 -21.78203 -21.34558 -21.03768 -20.09669 -20.05857 -19.13656 -17.55557 -17.31424 -17.06130 -16.64006 -16.55262 -16.31904 -16.14047 -15.95694 -15.81470 -15.36626 -15.17648 -14.88763 -14.72104 -14.22037 -13.97044 -13.80354 -13.69591 -13.54254 -13.41302 -13.27709 -13.03419 -12.99345 -12.91412 -12.84784 -12.69850 -12.44184 -12.24879 -12.10564 -11.97352 -11.70031 -11.57876 -11.52270 -11.40277 -11.15261 -10.67372 -10.56118 -10.33209 -10.09460 -9.54428 -9.13729 -8.50722 -6.00966 1.35426 1.41564 1.47009 1.58585 1.88914 2.08663 2.28151 2.82591 3.07094 3.16243 3.16379 3.38538 3.64350 3.82333 4.07932 4.10073 4.20256 4.28331 4.32671 4.36645 4.41363 4.44356 4.50756 4.54862 4.58709 4.64425 4.69117 4.72097 4.74296 4.82345 4.84576 4.87849 4.99162 5.03918 5.08512 5.13502 5.19912 5.26671 5.30270 5.33944 5.38185 5.39287 5.44304 5.64972 5.92385 5.98736 6.20971 6.22573 6.47959 6.88369 7.03529 7.41018 7.49781 7.94065 8.66493 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.001946 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.387005 B =14387.624952 C =15077.440418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.090 3.910 5 H 0.044 0.956 6 C -0.110 4.110 7 C -0.090 4.090 8 C -0.094 4.094 9 H 0.081 0.919 10 C 0.104 3.896 11 N -0.640 5.640 12 C 0.718 3.282 13 O -0.634 6.634 14 N -0.724 5.724 15 C 0.141 3.859 16 C 0.435 3.565 17 O -0.623 6.623 18 N -0.559 5.559 19 C -0.336 4.336 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.916 5.916 23 Si 0.999 3.001 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.136 3.864 28 C -0.084 4.084 29 H 0.094 0.906 30 C -0.096 4.096 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.408 0.592 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.399 0.601 47 H 0.280 0.720 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.076 0.924 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 25.725 13.476 30.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.274 5.274 3 C -0.126 4.126 4 C -0.018 4.018 5 H 0.062 0.938 6 C -0.148 4.148 7 C -0.128 4.128 8 C -0.113 4.113 9 H 0.100 0.900 10 C -0.018 4.018 11 N -0.379 5.379 12 C 0.419 3.581 13 O -0.516 6.516 14 N -0.382 5.382 15 C 0.013 3.987 16 C 0.222 3.778 17 O -0.511 6.511 18 N -0.194 5.194 19 C -0.465 4.465 20 H 0.105 0.895 21 C -0.213 4.213 22 N -0.556 5.556 23 Si 0.822 3.178 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.197 1.197 27 C 0.014 3.986 28 C -0.103 4.103 29 H 0.113 0.887 30 C -0.134 4.134 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.246 0.754 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.233 0.767 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.094 0.906 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.411 25.261 13.005 29.930 hybrid contribution 0.307 -0.389 0.143 0.516 sum -9.104 24.872 13.148 29.570 Atomic orbital electron populations 1.22474 0.87289 1.02602 1.00540 1.62021 1.08025 1.14034 1.43302 1.22443 1.01483 0.88337 1.00301 1.21697 0.95179 0.93460 0.91462 0.93832 1.21625 0.93612 1.01133 0.98403 1.21175 0.99977 0.92345 0.99325 1.22006 0.95989 0.95728 0.97600 0.90029 1.22442 0.89182 0.89876 1.00270 1.48491 1.17441 1.10353 1.61570 1.15508 0.82613 0.81418 0.78557 1.90861 1.37079 1.57633 1.66053 1.44715 1.16378 1.14742 1.62316 1.20591 0.94766 0.83977 0.99379 1.20356 0.89947 0.83420 0.84115 1.90462 1.50324 1.45719 1.64600 1.41838 1.15248 1.12024 1.50313 1.19782 0.92210 0.99187 1.35309 0.89508 1.26162 1.03184 0.94542 0.97407 1.69692 1.35793 1.05040 1.45108 0.84786 0.76788 0.78336 0.77900 1.19366 1.19626 1.19653 1.21562 0.87438 0.93409 0.96170 1.21677 0.95303 0.92770 1.00540 0.88728 1.21418 1.01004 0.94632 0.96313 0.95562 0.91297 0.90924 0.90685 0.91339 0.95564 0.91150 0.90711 0.91265 0.90939 0.90570 0.90668 0.75363 0.89114 0.89161 0.76698 0.91074 0.92166 0.92220 0.90552 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.10 127.69 1.16 1.35 16 2 N -0.55 -6.02 3.67 -922.51 -3.39 -9.41 16 3 C 0.02 0.20 8.99 127.69 1.15 1.35 16 4 C 0.09 0.92 2.19 45.05 0.10 1.02 16 5 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 6 C -0.11 -1.06 5.04 30.72 0.15 -0.91 16 7 C -0.09 -1.09 5.56 30.41 0.17 -0.92 16 8 C -0.09 -1.45 2.44 -10.32 -0.03 -1.48 16 9 H 0.08 1.29 8.02 -2.39 -0.02 1.27 16 10 C 0.10 2.20 6.26 85.77 0.54 2.73 16 11 N -0.64 -17.67 3.41 -827.87 -2.82 -20.49 16 12 C 0.72 25.83 8.50 179.05 1.52 27.36 16 13 O -0.63 -26.99 16.69 -3.97 -0.07 -27.06 16 14 N -0.72 -26.44 5.49 -482.31 -2.65 -29.08 16 15 C 0.14 5.55 6.15 85.63 0.53 6.07 16 16 C 0.43 20.70 7.85 87.65 0.69 21.39 16 17 O -0.62 -32.88 15.24 -3.08 -0.05 -32.92 16 18 N -0.56 -28.65 5.29 -306.97 -1.62 -30.27 16 19 C -0.34 -18.70 9.68 84.04 0.81 -17.89 16 20 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 23 Si 1.00 42.09 29.55 68.60 2.03 44.12 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 C 0.14 3.03 6.62 85.82 0.57 3.60 16 28 C -0.08 -1.29 2.29 -10.63 -0.02 -1.31 16 29 H 0.09 1.59 7.14 -2.39 -0.02 1.58 16 30 C -0.10 -1.09 4.81 30.37 0.15 -0.95 16 31 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.07 0.65 8.05 -2.39 -0.02 0.64 16 33 H 0.07 0.75 6.11 -2.39 -0.01 0.73 16 34 H 0.07 0.63 6.49 -2.39 -0.02 0.62 16 35 H 0.07 0.58 8.00 -2.39 -0.02 0.56 16 36 H 0.03 0.22 8.11 -2.39 -0.02 0.20 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.63 6.10 -2.39 -0.01 0.62 16 39 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.07 0.98 7.84 -2.38 -0.02 0.96 16 41 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.07 1.66 7.42 -2.39 -0.02 1.64 16 43 H 0.41 14.62 5.96 -92.71 -0.55 14.06 16 44 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 45 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 47 H 0.28 14.00 8.31 -92.71 -0.77 13.22 16 48 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 49 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.08 0.81 6.13 -2.39 -0.01 0.80 16 51 H 0.08 0.84 8.03 -2.39 -0.02 0.82 16 Total: -1.00 -68.46 394.70 -0.67 -69.12 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.34 Total: 43.68 kcal Atomic # 6 Polarization: 33.29 SS G_CDS: 7.95 Total: 41.24 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -10.20 Total: -138.17 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -0.11 Total: -59.98 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -68.46 -0.67 -69.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352063660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.570 kcal (2) G-P(sol) polarization free energy of solvation -68.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds