Wall clock time and date at job start Tue Mar 31 2020 21:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00224 * 2 1 4 4 C 1.52993 * 109.47461 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47321 * 179.81730 * 4 3 2 6 6 C 1.36743 * 127.13970 * 90.77369 * 5 4 3 7 7 C 1.50701 * 126.34087 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47347 * 269.71351 * 7 6 5 9 9 C 1.50702 * 109.46892 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00159 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99303 * 179.72605 * 9 8 7 12 12 N 1.31505 * 120.00398 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99554 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46962 * 89.99729 * 13 11 9 15 15 H 1.48499 * 109.47054 * 209.99898 * 13 11 9 16 16 H 1.48507 * 109.47117 * 330.00190 * 13 11 9 17 17 N 1.30288 * 107.30655 * 179.73957 * 6 5 4 18 18 N 1.28527 * 110.05593 * 0.25949 * 17 6 5 19 19 C 1.31213 * 109.85967 * 0.02562 * 18 17 6 20 20 N 1.38587 * 126.47250 * 179.97438 * 19 18 17 21 21 C 1.46848 * 111.00140 * 272.88021 * 20 19 18 22 22 C 1.53034 * 109.52493 * 185.83990 * 21 20 19 23 23 C 1.53123 * 109.27720 * 300.82151 * 22 21 20 24 24 C 1.53002 * 109.52133 * 177.56122 * 23 22 21 25 25 O 1.42890 * 109.47174 * 65.31510 * 24 23 22 26 26 C 1.53124 * 109.16009 * 57.65560 * 23 22 21 27 27 C 1.46848 * 110.99983 * 37.09048 * 20 19 18 28 28 H 1.08998 * 109.46521 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46948 * 300.00120 * 1 2 3 30 30 H 1.09000 * 109.46649 * 59.99969 * 1 2 3 31 31 H 1.08999 * 109.46978 * 59.99872 * 3 2 1 32 32 H 1.09006 * 109.46612 * 300.00381 * 3 2 1 33 33 H 1.09002 * 109.47283 * 59.82141 * 4 3 2 34 34 H 1.09000 * 109.47034 * 299.81881 * 4 3 2 35 35 H 1.09004 * 109.46329 * 149.71248 * 7 6 5 36 36 H 1.09001 * 109.47475 * 29.72159 * 7 6 5 37 37 H 1.08994 * 109.46876 * 60.00146 * 8 7 6 38 38 H 1.09001 * 109.46877 * 300.00354 * 8 7 6 39 39 H 0.97001 * 119.99928 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.45972 * 305.85926 * 21 20 19 41 41 H 1.09002 * 109.46041 * 65.82486 * 21 20 19 42 42 H 1.09002 * 109.50265 * 180.88059 * 22 21 20 43 43 H 1.09004 * 109.50149 * 60.76170 * 22 21 20 44 44 H 1.08995 * 109.52340 * 297.74985 * 23 22 21 45 45 H 1.09005 * 109.46937 * 185.32183 * 24 23 22 46 46 H 1.09008 * 109.46936 * 305.31361 * 24 23 22 47 47 H 0.96707 * 114.00112 * 180.02562 * 25 24 23 48 48 H 1.08995 * 109.50002 * 182.40236 * 26 23 22 49 49 H 1.08998 * 109.49815 * 62.28691 * 26 23 22 50 50 H 1.08996 * 109.46397 * 294.17711 * 27 20 19 51 51 H 1.08998 * 109.46054 * 54.14617 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0050 6 6 4.4813 3.2745 1.0824 7 6 4.3253 2.8797 2.5284 8 6 2.9579 3.3395 3.0380 9 6 2.8023 2.9452 4.4842 10 1 3.5991 2.4196 4.9894 11 6 1.6450 3.2610 5.1640 12 7 0.6774 3.9066 4.5507 13 14 1.4517 2.7716 6.9564 14 1 1.9646 3.8613 7.8251 15 1 0.0158 2.5362 7.2532 16 1 2.2212 1.5282 7.2158 17 7 4.9792 4.3929 0.6367 18 7 4.9628 4.4015 -0.6484 19 6 4.4488 3.2799 -1.0952 20 7 4.2681 2.9279 -2.4234 21 6 2.9789 3.4183 -2.9271 22 6 2.7491 2.8896 -4.3447 23 6 3.8871 3.3650 -5.2522 24 6 3.6954 2.7894 -6.6568 25 8 2.5073 3.3323 -7.2360 26 6 5.2223 2.8819 -4.6790 27 6 5.3803 3.4110 -3.2517 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8565 0.6412 -0.8893 34 1 3.8577 0.6464 0.8907 35 1 5.1107 3.3500 3.1201 36 1 4.4015 1.7961 2.6195 37 1 2.1727 2.8692 2.4463 38 1 2.8819 4.4231 2.9470 39 1 -0.1366 4.1291 5.0291 40 1 2.1780 3.0697 -2.2752 41 1 2.9859 4.5082 -2.9427 42 1 1.7993 3.2664 -4.7242 43 1 2.7283 1.7998 -4.3277 44 1 3.8839 4.4539 -5.3003 45 1 4.5536 3.0498 -7.2764 46 1 3.6071 1.7046 -6.5960 47 1 2.3224 3.0103 -8.1289 48 1 6.0394 3.2534 -5.2974 49 1 5.2402 1.7922 -4.6674 50 1 5.3760 4.5009 -3.2658 51 1 6.3235 3.0570 -2.8356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355380121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:01 Heat of formation + Delta-G solvation = -25.831547 kcal Electronic energy + Delta-G solvation = -30759.564861 eV Core-core repulsion = 26695.086692 eV Total energy + Delta-G solvation = -4064.478169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.68053 -39.47804 -37.95001 -37.11234 -35.06741 -34.39579 -33.55944 -31.65880 -31.16769 -29.71624 -28.81278 -26.93038 -26.24380 -25.23190 -23.60257 -23.32250 -22.83034 -21.87006 -20.89610 -19.94781 -19.65119 -17.65674 -17.49492 -16.72038 -16.37800 -16.04775 -15.94771 -15.62462 -15.38721 -15.06654 -14.79272 -14.61778 -14.37890 -14.17051 -13.71105 -13.58069 -13.33179 -13.25314 -12.96923 -12.52796 -12.44848 -12.29708 -12.19850 -11.58456 -11.48454 -11.42054 -11.27343 -11.13525 -11.04891 -10.99486 -10.79496 -10.74327 -10.68297 -10.34531 -10.26215 -10.03299 -9.90654 -9.81206 -9.61423 -9.23807 -9.00928 -8.42731 -8.24163 -6.08092 -4.11752 2.00284 2.39810 3.21240 3.28702 3.35235 3.37908 3.51287 3.81775 4.05663 4.39682 4.41140 4.45529 4.70830 4.74574 4.89778 4.97519 4.99208 5.02669 5.07027 5.15581 5.19609 5.27008 5.28386 5.34472 5.36108 5.41848 5.47007 5.48024 5.50186 5.62089 5.66102 5.70869 5.71935 5.74233 5.82864 5.89096 5.92861 6.14772 6.29763 6.35135 6.42741 6.63675 6.68736 6.92238 7.07206 7.26616 7.43225 7.52653 7.65378 7.89171 8.26796 8.93872 9.13106 9.52921 11.02987 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002850 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.886622 B = 9821.759023 C =10790.317259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.044 3.956 4 C 0.119 3.881 5 N -0.465 5.465 6 C 0.218 3.782 7 C -0.034 4.034 8 C 0.032 3.968 9 C -0.523 4.523 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.296 5.296 18 N -0.314 5.314 19 C 0.326 3.674 20 N -0.458 5.458 21 C 0.061 3.939 22 C -0.104 4.104 23 C -0.091 4.091 24 C 0.082 3.918 25 O -0.573 6.573 26 C -0.109 4.109 27 C 0.073 3.927 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.014 0.986 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.378 0.622 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.057 0.943 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -7.667 -22.436 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C -0.033 4.033 4 C -0.004 4.004 5 N -0.160 5.160 6 C -0.049 4.049 7 C -0.074 4.074 8 C -0.006 4.006 9 C -0.561 4.561 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.198 1.198 17 N -0.135 5.135 18 N -0.158 5.158 19 C -0.030 4.030 20 N -0.183 5.183 21 C -0.066 4.066 22 C -0.142 4.142 23 C -0.110 4.110 24 C 0.004 3.996 25 O -0.378 6.378 26 C -0.147 4.147 27 C -0.054 4.054 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.075 0.925 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.403 -6.606 -21.881 23.276 hybrid contribution -1.054 -0.784 0.439 1.385 sum 3.348 -7.390 -21.442 22.925 Atomic orbital electron populations 1.22762 0.80211 1.02711 1.00573 1.87738 1.20373 1.26795 1.95605 1.22893 0.92674 0.85633 1.02121 1.21465 0.92478 0.80619 1.05881 1.46149 1.47743 1.15952 1.06167 1.25662 0.97861 0.88860 0.92493 1.20497 1.03581 1.00822 0.82473 1.19107 0.88157 0.97437 0.95868 1.21132 1.01761 1.37462 0.95748 0.92243 1.24995 0.95882 0.94969 0.98334 1.69962 1.06566 1.39870 1.36748 0.86564 0.77233 0.79002 0.85049 1.20522 1.21250 1.19759 1.74055 1.19986 1.17478 1.01948 1.74518 1.20707 1.16065 1.04467 1.22212 1.04066 0.89058 0.87671 1.58552 1.04484 1.59287 0.95996 1.22266 0.89223 0.98678 0.96471 1.21584 0.98670 1.01476 0.92428 1.21235 0.95427 1.01331 0.93006 1.22211 0.86753 0.96716 0.93886 1.86493 1.44687 1.71811 1.34829 1.21612 0.96466 1.01892 0.94758 1.21994 0.92436 0.99233 0.91714 0.89487 0.93151 0.94241 0.90758 0.93186 0.87835 0.87649 0.89113 0.91044 0.96738 0.95641 0.92887 0.90603 0.93196 0.90241 0.91007 0.90309 0.93672 0.93494 0.77540 0.90662 0.90696 0.92493 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -5.61 10.70 -35.23 -0.38 -5.99 16 3 C 0.04 0.67 6.26 37.15 0.23 0.90 16 4 C 0.12 1.71 6.40 -4.05 -0.03 1.68 16 5 N -0.47 -7.92 2.81 -114.09 -0.32 -8.24 16 6 C 0.22 4.33 7.32 -154.02 -1.13 3.20 16 7 C -0.03 -0.69 5.53 -27.88 -0.15 -0.84 16 8 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 9 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 13 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 17 N -0.30 -6.39 12.18 32.99 0.40 -5.99 16 18 N -0.31 -6.21 11.71 30.32 0.36 -5.86 16 19 C 0.33 5.49 6.70 -318.87 -2.14 3.35 16 20 N -0.46 -6.01 4.67 -174.55 -0.82 -6.83 16 21 C 0.06 0.74 5.40 -3.83 -0.02 0.72 16 22 C -0.10 -1.00 5.25 -26.65 -0.14 -1.14 16 23 C -0.09 -0.77 2.49 -90.49 -0.23 -1.00 16 24 C 0.08 0.56 6.43 37.16 0.24 0.80 16 25 O -0.57 -4.44 13.26 -35.23 -0.47 -4.91 16 26 C -0.11 -0.88 5.38 -26.65 -0.14 -1.02 16 27 C 0.07 0.83 5.10 -3.83 -0.02 0.81 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.35 6.35 -51.93 -0.33 1.02 16 32 H 0.05 0.71 6.30 -51.93 -0.33 0.39 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.11 1.47 7.22 -51.93 -0.38 1.09 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.07 1.31 7.24 -51.93 -0.38 0.93 16 37 H 0.01 0.37 6.35 -51.93 -0.33 0.04 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.08 0.99 6.26 -51.93 -0.33 0.66 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 47 H 0.38 1.23 9.12 45.56 0.42 1.65 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 51 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -33.33 407.08 -10.27 -43.60 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.93 Total: 0.63 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.96 Total: -3.23 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.36 Total: -52.32 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.84 Total: -10.90 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.33 -10.27 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355380121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.767 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds