Wall clock time and date at job start Tue Mar 31 2020 21:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00224 * 2 1 4 4 C 1.52993 * 109.47461 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47321 * 179.81730 * 4 3 2 6 6 C 1.36743 * 127.13970 * 90.77369 * 5 4 3 7 7 C 1.50701 * 126.34087 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47347 * 269.71351 * 7 6 5 9 9 C 1.50702 * 109.46892 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00159 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99303 * 179.72605 * 9 8 7 12 12 N 1.31505 * 120.00398 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99554 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46962 * 89.99729 * 13 11 9 15 15 H 1.48499 * 109.47054 * 209.99898 * 13 11 9 16 16 H 1.48507 * 109.47117 * 330.00190 * 13 11 9 17 17 N 1.30288 * 107.30655 * 179.73957 * 6 5 4 18 18 N 1.28527 * 110.05593 * 0.25949 * 17 6 5 19 19 C 1.31213 * 109.85967 * 0.02562 * 18 17 6 20 20 N 1.38587 * 126.47250 * 179.97438 * 19 18 17 21 21 C 1.46848 * 111.00140 * 272.88021 * 20 19 18 22 22 C 1.53034 * 109.52493 * 185.83990 * 21 20 19 23 23 C 1.53123 * 109.27720 * 300.82151 * 22 21 20 24 24 C 1.53002 * 109.52133 * 177.56122 * 23 22 21 25 25 O 1.42890 * 109.47174 * 65.31510 * 24 23 22 26 26 C 1.53124 * 109.16009 * 57.65560 * 23 22 21 27 27 C 1.46848 * 110.99983 * 37.09048 * 20 19 18 28 28 H 1.08998 * 109.46521 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46948 * 300.00120 * 1 2 3 30 30 H 1.09000 * 109.46649 * 59.99969 * 1 2 3 31 31 H 1.08999 * 109.46978 * 59.99872 * 3 2 1 32 32 H 1.09006 * 109.46612 * 300.00381 * 3 2 1 33 33 H 1.09002 * 109.47283 * 59.82141 * 4 3 2 34 34 H 1.09000 * 109.47034 * 299.81881 * 4 3 2 35 35 H 1.09004 * 109.46329 * 149.71248 * 7 6 5 36 36 H 1.09001 * 109.47475 * 29.72159 * 7 6 5 37 37 H 1.08994 * 109.46876 * 60.00146 * 8 7 6 38 38 H 1.09001 * 109.46877 * 300.00354 * 8 7 6 39 39 H 0.97001 * 119.99928 * 180.02562 * 12 11 9 40 40 H 1.08996 * 109.45972 * 305.85926 * 21 20 19 41 41 H 1.09002 * 109.46041 * 65.82486 * 21 20 19 42 42 H 1.09002 * 109.50265 * 180.88059 * 22 21 20 43 43 H 1.09004 * 109.50149 * 60.76170 * 22 21 20 44 44 H 1.08995 * 109.52340 * 297.74985 * 23 22 21 45 45 H 1.09005 * 109.46937 * 185.32183 * 24 23 22 46 46 H 1.09008 * 109.46936 * 305.31361 * 24 23 22 47 47 H 0.96707 * 114.00112 * 180.02562 * 25 24 23 48 48 H 1.08995 * 109.50002 * 182.40236 * 26 23 22 49 49 H 1.08998 * 109.49815 * 62.28691 * 26 23 22 50 50 H 1.08996 * 109.46397 * 294.17711 * 27 20 19 51 51 H 1.08998 * 109.46054 * 54.14617 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0050 6 6 4.4813 3.2745 1.0824 7 6 4.3253 2.8797 2.5284 8 6 2.9579 3.3395 3.0380 9 6 2.8023 2.9452 4.4842 10 1 3.5991 2.4196 4.9894 11 6 1.6450 3.2610 5.1640 12 7 0.6774 3.9066 4.5507 13 14 1.4517 2.7716 6.9564 14 1 1.9646 3.8613 7.8251 15 1 0.0158 2.5362 7.2532 16 1 2.2212 1.5282 7.2158 17 7 4.9792 4.3929 0.6367 18 7 4.9628 4.4015 -0.6484 19 6 4.4488 3.2799 -1.0952 20 7 4.2681 2.9279 -2.4234 21 6 2.9789 3.4183 -2.9271 22 6 2.7491 2.8896 -4.3447 23 6 3.8871 3.3650 -5.2522 24 6 3.6954 2.7894 -6.6568 25 8 2.5073 3.3323 -7.2360 26 6 5.2223 2.8819 -4.6790 27 6 5.3803 3.4110 -3.2517 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8565 0.6412 -0.8893 34 1 3.8577 0.6464 0.8907 35 1 5.1107 3.3500 3.1201 36 1 4.4015 1.7961 2.6195 37 1 2.1727 2.8692 2.4463 38 1 2.8819 4.4231 2.9470 39 1 -0.1366 4.1291 5.0291 40 1 2.1780 3.0697 -2.2752 41 1 2.9859 4.5082 -2.9427 42 1 1.7993 3.2664 -4.7242 43 1 2.7283 1.7998 -4.3277 44 1 3.8839 4.4539 -5.3003 45 1 4.5536 3.0498 -7.2764 46 1 3.6071 1.7046 -6.5960 47 1 2.3224 3.0103 -8.1289 48 1 6.0394 3.2534 -5.2974 49 1 5.2402 1.7922 -4.6674 50 1 5.3760 4.5009 -3.2658 51 1 6.3235 3.0570 -2.8356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355380121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:00 Heat of formation + Delta-G solvation = -47.764694 kcal Electronic energy + Delta-G solvation = -30760.515953 eV Core-core repulsion = 26695.086692 eV Total energy + Delta-G solvation = -4065.429262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.13638 -40.37879 -39.11350 -37.77311 -36.54159 -35.89672 -34.83288 -33.45585 -32.04036 -30.97980 -30.31974 -27.98258 -27.28353 -27.01312 -24.73739 -24.37822 -23.86326 -23.57848 -22.03127 -21.35680 -20.63342 -18.88579 -18.40177 -18.15913 -17.85150 -17.33930 -17.14823 -16.81895 -16.51434 -16.12365 -16.02302 -15.74020 -15.58453 -15.41197 -14.98306 -14.70243 -14.44067 -14.35396 -14.25364 -14.04742 -13.53433 -13.38355 -13.21237 -13.07907 -12.91104 -12.78422 -12.70577 -12.50643 -12.37897 -12.25483 -12.02201 -11.83869 -11.78253 -11.60646 -11.52652 -11.42450 -11.33631 -11.23159 -10.81270 -10.75559 -10.55938 -10.36169 -9.65513 -8.21303 -6.32867 0.58237 1.07706 1.42278 1.43633 1.54178 1.68610 2.37514 2.41053 2.88040 3.13198 3.31142 3.42882 3.50756 3.63084 3.69484 3.79140 3.93044 3.93305 4.11896 4.15712 4.17421 4.24438 4.28874 4.32831 4.44039 4.46925 4.54061 4.55998 4.58603 4.63858 4.65591 4.72360 4.75606 4.78933 4.82272 4.86158 4.90309 4.97567 4.99260 5.12942 5.17871 5.40658 5.44461 5.49718 5.57780 5.67140 5.77498 5.94120 6.11790 6.16136 6.82280 6.98165 7.36819 7.62522 8.90642 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002850 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.886622 B = 9821.759023 C =10790.317259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.392 6.392 3 C 0.055 3.945 4 C 0.119 3.881 5 N -0.462 5.462 6 C 0.206 3.794 7 C -0.019 4.019 8 C 0.044 3.956 9 C -0.538 4.538 10 H 0.072 0.928 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.257 1.257 17 N -0.329 5.329 18 N -0.345 5.345 19 C 0.344 3.656 20 N -0.447 5.447 21 C 0.062 3.938 22 C -0.093 4.093 23 C -0.092 4.092 24 C 0.085 3.915 25 O -0.596 6.596 26 C -0.097 4.097 27 C 0.070 3.930 28 H 0.114 0.886 29 H 0.030 0.970 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.096 0.904 37 H -0.002 1.002 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.397 0.603 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.040 0.960 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 -10.210 -23.918 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.310 6.310 3 C -0.023 4.023 4 C -0.003 4.003 5 N -0.156 5.156 6 C -0.062 4.062 7 C -0.058 4.058 8 C 0.006 3.994 9 C -0.576 4.576 10 H 0.090 0.910 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.789 3.211 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.181 1.181 17 N -0.168 5.168 18 N -0.189 5.189 19 C -0.013 4.013 20 N -0.173 5.173 21 C -0.065 4.065 22 C -0.131 4.131 23 C -0.111 4.111 24 C 0.008 3.992 25 O -0.405 6.405 26 C -0.134 4.134 27 C -0.057 4.057 28 H 0.132 0.868 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.016 0.984 38 H 0.001 0.999 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.246 0.754 48 H 0.116 0.884 49 H 0.106 0.894 50 H 0.059 0.941 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.018 -9.167 -23.390 25.618 hybrid contribution -1.305 0.024 0.786 1.523 sum 3.713 -9.143 -22.604 24.664 Atomic orbital electron populations 1.22963 0.78962 1.04475 1.00401 1.87724 1.21724 1.26013 1.95551 1.22673 0.93250 0.85834 1.00515 1.21680 0.91784 0.79338 1.07527 1.46229 1.47280 1.16638 1.05424 1.25399 0.98790 0.89178 0.92846 1.20216 1.00588 1.02123 0.82921 1.18870 0.90562 0.94498 0.95512 1.21578 1.02098 1.37204 0.96679 0.90991 1.25948 0.95568 0.94860 1.03145 1.70109 1.07213 1.41227 1.38749 0.85445 0.77322 0.79162 0.79131 1.20148 1.21009 1.18084 1.73955 1.21144 1.18583 1.03099 1.74446 1.22784 1.17782 1.03848 1.22648 1.01546 0.87997 0.89075 1.58860 1.05540 1.58665 0.94262 1.22299 0.88345 0.97674 0.98182 1.21520 0.99208 1.01911 0.90445 1.21230 0.95072 1.00553 0.94222 1.22180 0.87150 0.97203 0.92688 1.86441 1.45130 1.72455 1.36467 1.21564 0.97006 1.02536 0.92341 1.22140 0.91585 0.98475 0.93496 0.86770 0.95094 0.92679 0.94643 0.92543 0.85167 0.86947 0.88969 0.88602 0.98350 0.99932 0.92847 0.91614 0.95039 0.90443 0.89886 0.91860 0.92021 0.92128 0.75372 0.88367 0.89356 0.94127 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.39 -10.94 10.70 -148.98 -1.59 -12.53 16 3 C 0.06 1.66 6.26 71.98 0.45 2.11 16 4 C 0.12 3.29 6.40 86.38 0.55 3.84 16 5 N -0.46 -15.75 2.81 -514.86 -1.45 -17.20 16 6 C 0.21 8.40 7.32 137.64 1.01 9.41 16 7 C -0.02 -0.78 5.53 29.85 0.16 -0.61 16 8 C 0.04 2.28 4.96 29.85 0.15 2.43 16 9 C -0.54 -29.50 9.11 25.60 0.23 -29.26 16 10 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 11 C 0.00 0.16 5.46 84.66 0.46 0.62 16 12 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 13 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 17 N -0.33 -14.76 12.18 -49.54 -0.60 -15.36 16 18 N -0.35 -14.10 11.71 -58.00 -0.68 -14.78 16 19 C 0.34 11.66 6.70 260.11 1.74 13.40 16 20 N -0.45 -11.39 4.67 -706.16 -3.30 -14.69 16 21 C 0.06 1.50 5.40 86.32 0.47 1.96 16 22 C -0.09 -1.63 5.25 30.65 0.16 -1.47 16 23 C -0.09 -1.36 2.49 -10.71 -0.03 -1.39 16 24 C 0.09 0.89 6.43 71.98 0.46 1.36 16 25 O -0.60 -7.82 13.26 -148.98 -1.98 -9.80 16 26 C -0.10 -1.28 5.38 30.65 0.16 -1.12 16 27 C 0.07 1.50 5.10 86.33 0.44 1.94 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 1.35 6.35 -2.39 -0.02 1.34 16 32 H 0.06 1.60 6.30 -2.38 -0.02 1.59 16 33 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.11 2.97 7.22 -2.39 -0.02 2.96 16 35 H 0.09 3.76 8.14 -2.38 -0.02 3.74 16 36 H 0.10 3.45 7.24 -2.39 -0.02 3.43 16 37 H 0.00 -0.10 6.35 -2.39 -0.02 -0.11 16 38 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 39 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.07 1.71 6.26 -2.39 -0.01 1.70 16 41 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 1.43 7.91 -2.39 -0.02 1.41 16 43 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 47 H 0.40 1.60 9.12 -74.05 -0.68 0.92 16 48 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 51 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -74.66 407.08 0.64 -74.02 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.25 Total: 15.84 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 7.68 Total: 5.11 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -5.74 Total: -118.02 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -3.57 Total: -22.33 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -74.66 0.64 -74.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355380121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.251 kcal (2) G-P(sol) polarization free energy of solvation -74.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds