Wall clock time and date at job start Tue Mar 31 2020 20:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 6 6 C 1.42901 * 113.99649 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46429 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.29203 * 304.32656 * 7 6 5 9 9 C 1.54262 * 110.32415 * 66.46069 * 7 6 5 10 10 C 1.54380 * 105.06506 * 118.89356 * 9 7 6 11 11 N 1.48563 * 104.59406 * 23.84935 * 10 9 7 12 12 C 1.38583 * 111.00302 * 200.96241 * 11 10 9 13 13 N 1.31216 * 126.47187 * 120.15022 * 12 11 10 14 14 N 1.28532 * 109.85437 * 179.97438 * 13 12 11 15 15 C 1.30290 * 110.05420 * 359.97438 * 14 13 12 16 16 C 1.50702 * 126.34593 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47370 * 90.01789 * 16 15 14 18 18 C 1.50696 * 109.47104 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00279 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00043 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99818 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00355 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46783 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47190 * 119.99940 * 22 20 18 25 25 H 1.48500 * 109.46949 * 239.99974 * 22 20 18 26 26 N 1.36447 * 126.46855 * 299.84370 * 12 11 10 27 27 C 1.46499 * 127.14161 * 0.02899 * 26 12 11 28 28 C 1.48567 * 104.22112 * 320.51998 * 11 10 9 29 29 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 31 31 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 32 32 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 33 33 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 34 34 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 35 35 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 36 36 H 1.08990 * 109.47463 * 299.99806 * 6 5 4 37 37 H 1.08992 * 109.47069 * 60.00902 * 6 5 4 38 38 H 1.09006 * 110.32138 * 237.78932 * 9 7 6 39 39 H 1.09001 * 110.32616 * 359.97438 * 9 7 6 40 40 H 1.09001 * 110.41606 * 142.62929 * 10 9 7 41 41 H 1.08996 * 110.41085 * 265.07469 * 10 9 7 42 42 H 1.08998 * 109.47408 * 210.02796 * 16 15 14 43 43 H 1.09008 * 109.46638 * 330.02365 * 16 15 14 44 44 H 1.09001 * 109.47122 * 300.00331 * 17 16 15 45 45 H 1.09004 * 109.46377 * 60.00388 * 17 16 15 46 46 H 0.96997 * 119.99693 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.46963 * 90.00389 * 27 26 12 48 48 H 1.09001 * 109.47559 * 210.00924 * 27 26 12 49 49 H 1.09001 * 109.47112 * 330.00491 * 27 26 12 50 50 H 1.08994 * 110.41029 * 280.69979 * 28 11 10 51 51 H 1.09001 * 110.40669 * 158.25868 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3249 7 6 5.7246 -0.2330 -2.6652 8 1 5.1892 -1.1762 -2.7742 9 6 5.3775 0.7179 -3.8292 10 6 6.7196 0.9829 -4.5446 11 7 7.5651 -0.1892 -4.2004 12 6 8.9099 0.1038 -4.3620 13 7 9.8345 0.0624 -3.4318 14 7 10.9714 0.3942 -3.9313 15 6 10.8407 0.6641 -5.1992 16 6 11.9384 1.0915 -6.1392 17 6 12.5724 -0.1454 -6.7788 18 6 13.6705 0.2819 -7.7183 19 1 13.8942 1.3308 -7.8460 20 6 14.3897 -0.6661 -8.4147 21 7 14.1176 -1.9434 -8.2588 22 14 15.7514 -0.1365 -9.5787 23 1 15.8577 1.3447 -9.5747 24 1 17.0395 -0.7270 -9.1349 25 1 15.4388 -0.6061 -10.9524 26 7 9.5237 0.4842 -5.5198 27 6 8.9005 0.6650 -6.8332 28 6 7.2473 -0.4625 -2.7751 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.9784 2.1766 0.0889 35 1 3.8514 0.5683 0.8410 36 1 5.8621 1.3963 -1.2631 37 1 5.7357 -0.2119 -0.5109 38 1 4.6730 0.2408 -4.5106 39 1 4.9621 1.6499 -3.4458 40 1 6.5708 1.0407 -5.6229 41 1 7.1737 1.9013 -4.1729 42 1 11.5218 1.7302 -6.9179 43 1 12.6975 1.6430 -5.5843 44 1 12.9891 -0.7841 -6.0000 45 1 11.8133 -0.6969 -7.3336 46 1 14.6238 -2.6103 -8.7485 47 1 8.5587 1.6951 -6.9345 48 1 9.6284 0.4452 -7.6142 49 1 8.0506 -0.0108 -6.9282 50 1 7.7840 0.2297 -2.1265 51 1 7.4957 -1.4930 -2.5212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355661323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:10 Heat of formation + Delta-G solvation = -10.442845 kcal Electronic energy + Delta-G solvation = -28993.699464 eV Core-core repulsion = 24929.888599 eV Total energy + Delta-G solvation = -4063.810865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.60497 -39.62203 -38.61600 -37.40984 -34.85558 -34.13533 -33.04233 -31.54635 -30.62297 -29.68882 -28.14548 -27.29386 -26.72659 -25.37890 -25.21724 -23.06938 -22.62995 -21.92859 -20.61706 -20.46451 -19.60207 -17.38652 -17.29319 -17.17719 -16.68109 -16.41083 -15.96026 -15.78685 -15.76218 -15.54978 -15.21607 -14.49869 -14.39797 -13.98210 -13.62349 -13.36038 -13.18147 -13.09905 -12.84547 -12.77992 -12.69452 -12.54134 -12.28754 -12.09169 -11.87196 -11.62302 -11.39493 -11.32699 -11.19545 -11.08067 -11.00376 -10.72694 -10.66627 -10.37690 -10.14825 -10.04675 -9.94981 -9.87922 -9.72684 -9.38625 -9.20358 -8.41233 -7.96981 -6.05006 -4.09432 2.11886 2.51539 3.18528 3.26760 3.28891 3.31958 3.36867 3.40266 3.81172 4.26542 4.34012 4.41407 4.50600 4.63234 4.70837 4.78884 4.84677 4.89026 4.92123 4.97296 5.01571 5.02837 5.08897 5.13053 5.19113 5.19819 5.25450 5.27235 5.28849 5.30967 5.35434 5.45839 5.56420 5.59478 5.67053 5.75948 5.85761 6.00933 6.15573 6.33372 6.45803 6.52341 6.66122 6.67909 6.84367 6.92361 7.41365 7.56246 7.69815 7.92494 8.29660 8.97029 9.20579 9.55316 11.06033 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.040577 B = 0.001643 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.881973 B =17036.701789 C =17191.062591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.378 6.378 6 C 0.070 3.930 7 C -0.091 4.091 8 H 0.095 0.905 9 C -0.110 4.110 10 C 0.031 3.969 11 N -0.425 5.425 12 C 0.325 3.675 13 N -0.322 5.322 14 N -0.295 5.295 15 C 0.213 3.787 16 C -0.030 4.030 17 C 0.031 3.969 18 C -0.524 4.524 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 N -0.481 5.481 27 C 0.076 3.924 28 C 0.061 3.939 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.026 0.974 45 H 0.014 0.986 46 H 0.261 0.739 47 H 0.073 0.927 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.990 8.491 13.050 32.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.297 6.297 6 C -0.007 4.007 7 C -0.110 4.110 8 H 0.113 0.887 9 C -0.148 4.148 10 C -0.097 4.097 11 N -0.149 5.149 12 C -0.032 4.032 13 N -0.167 5.167 14 N -0.133 5.133 15 C -0.055 4.055 16 C -0.070 4.070 17 C -0.008 4.008 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 N -0.175 5.175 27 C -0.068 4.068 28 C -0.066 4.066 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.044 0.956 45 H 0.033 0.967 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.119 0.881 49 H 0.107 0.893 50 H 0.089 0.911 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -27.431 7.443 13.845 31.616 hybrid contribution 0.245 1.133 -1.376 1.799 sum -27.186 8.576 12.470 31.115 Atomic orbital electron populations 1.22753 0.81034 1.02942 0.99851 1.87973 1.19612 1.27261 1.95364 1.22565 0.92423 0.85545 1.00849 1.22504 0.93283 0.97620 0.87958 1.87929 1.21966 1.82078 1.37699 1.22537 0.81496 0.99378 0.97288 1.21895 0.95328 1.00298 0.93525 0.88705 1.22293 0.95842 0.99952 0.96725 1.23350 0.93300 0.91272 1.01752 1.62158 0.97984 1.32755 1.21961 1.22622 0.92747 1.03458 0.84380 1.74462 0.95838 1.22196 1.24157 1.73984 1.15785 1.17377 1.06198 1.25588 0.83861 1.01383 0.94668 1.20437 0.91186 1.01463 0.93953 1.19087 0.95277 0.90910 0.95488 1.21176 1.17310 0.93179 1.24584 0.92240 1.25018 0.97367 0.94873 0.97011 1.69989 1.40891 1.00051 1.42047 0.86501 0.81945 0.78795 0.80554 1.19631 1.20917 1.21047 1.46055 1.08801 1.53103 1.09578 1.22095 1.00117 1.02496 0.82051 1.22974 0.93655 1.03785 0.86205 0.89517 0.94212 0.93988 0.91865 0.92382 0.91782 0.92331 0.93145 0.92655 0.90262 0.90360 0.89371 0.92914 0.91246 0.89292 0.95580 0.96733 0.92913 0.90840 0.88103 0.89301 0.91095 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.39 10.67 -40.09 -0.43 -3.82 16 3 C 0.06 0.41 6.32 37.16 0.23 0.64 16 4 C 0.06 0.44 6.32 37.16 0.23 0.67 16 5 O -0.38 -3.52 10.09 -40.09 -0.40 -3.93 16 6 C 0.07 0.59 5.01 37.16 0.19 0.77 16 7 C -0.09 -0.84 3.35 -89.23 -0.30 -1.14 16 8 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.11 -0.94 6.50 -25.35 -0.16 -1.10 16 10 C 0.03 0.31 5.88 -2.18 -0.01 0.30 16 11 N -0.42 -5.72 5.43 -170.09 -0.92 -6.64 16 12 C 0.32 5.59 7.04 -318.88 -2.25 3.35 16 13 N -0.32 -6.52 11.04 30.31 0.33 -6.18 16 14 N -0.30 -6.53 12.18 32.99 0.40 -6.13 16 15 C 0.21 4.30 7.32 -154.02 -1.13 3.18 16 16 C -0.03 -0.63 5.36 -27.88 -0.15 -0.77 16 17 C 0.03 0.78 4.96 -27.88 -0.14 0.65 16 18 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 19 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 22 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 N -0.48 -8.24 3.21 -121.46 -0.39 -8.63 16 27 C 0.08 0.95 9.66 59.85 0.58 1.53 16 28 C 0.06 0.72 5.61 -2.18 -0.01 0.70 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.62 7.66 -51.93 -0.40 0.22 16 40 H 0.09 0.79 7.01 -51.93 -0.36 0.43 16 41 H 0.05 0.58 7.97 -51.93 -0.41 0.16 16 42 H 0.07 1.26 7.95 -51.93 -0.41 0.84 16 43 H 0.09 1.81 8.14 -51.92 -0.42 1.38 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.10 1.36 7.90 -51.93 -0.41 0.95 16 49 H 0.09 0.98 7.76 -51.93 -0.40 0.58 16 50 H 0.07 0.89 7.23 -51.93 -0.38 0.52 16 51 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 415.47 15.07 6.26 6.26 Total: -1.00 -35.11 415.47 -10.73 -45.84 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -9.08 Total: -4.05 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.21 Total: -3.04 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.16 Total: -53.46 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.83 Total: -7.74 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.11 -10.73 -45.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355661323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.399 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds