Wall clock time and date at job start Tue Mar 31 2020 20:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 6 6 C 1.42901 * 113.99649 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46429 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.29203 * 304.32656 * 7 6 5 9 9 C 1.54262 * 110.32415 * 66.46069 * 7 6 5 10 10 C 1.54380 * 105.06506 * 118.89356 * 9 7 6 11 11 N 1.48563 * 104.59406 * 23.84935 * 10 9 7 12 12 C 1.38583 * 111.00302 * 200.96241 * 11 10 9 13 13 N 1.31216 * 126.47187 * 120.15022 * 12 11 10 14 14 N 1.28532 * 109.85437 * 179.97438 * 13 12 11 15 15 C 1.30290 * 110.05420 * 359.97438 * 14 13 12 16 16 C 1.50702 * 126.34593 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47370 * 90.01789 * 16 15 14 18 18 C 1.50696 * 109.47104 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00279 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00043 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99818 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00355 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46783 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47190 * 119.99940 * 22 20 18 25 25 H 1.48500 * 109.46949 * 239.99974 * 22 20 18 26 26 N 1.36447 * 126.46855 * 299.84370 * 12 11 10 27 27 C 1.46499 * 127.14161 * 0.02899 * 26 12 11 28 28 C 1.48567 * 104.22112 * 320.51998 * 11 10 9 29 29 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 31 31 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 32 32 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 33 33 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 34 34 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 35 35 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 36 36 H 1.08990 * 109.47463 * 299.99806 * 6 5 4 37 37 H 1.08992 * 109.47069 * 60.00902 * 6 5 4 38 38 H 1.09006 * 110.32138 * 237.78932 * 9 7 6 39 39 H 1.09001 * 110.32616 * 359.97438 * 9 7 6 40 40 H 1.09001 * 110.41606 * 142.62929 * 10 9 7 41 41 H 1.08996 * 110.41085 * 265.07469 * 10 9 7 42 42 H 1.08998 * 109.47408 * 210.02796 * 16 15 14 43 43 H 1.09008 * 109.46638 * 330.02365 * 16 15 14 44 44 H 1.09001 * 109.47122 * 300.00331 * 17 16 15 45 45 H 1.09004 * 109.46377 * 60.00388 * 17 16 15 46 46 H 0.96997 * 119.99693 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.46963 * 90.00389 * 27 26 12 48 48 H 1.09001 * 109.47559 * 210.00924 * 27 26 12 49 49 H 1.09001 * 109.47112 * 330.00491 * 27 26 12 50 50 H 1.08994 * 110.41029 * 280.69979 * 28 11 10 51 51 H 1.09001 * 110.40669 * 158.25868 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3249 7 6 5.7246 -0.2330 -2.6652 8 1 5.1892 -1.1762 -2.7742 9 6 5.3775 0.7179 -3.8292 10 6 6.7196 0.9829 -4.5446 11 7 7.5651 -0.1892 -4.2004 12 6 8.9099 0.1038 -4.3620 13 7 9.8345 0.0624 -3.4318 14 7 10.9714 0.3942 -3.9313 15 6 10.8407 0.6641 -5.1992 16 6 11.9384 1.0915 -6.1392 17 6 12.5724 -0.1454 -6.7788 18 6 13.6705 0.2819 -7.7183 19 1 13.8942 1.3308 -7.8460 20 6 14.3897 -0.6661 -8.4147 21 7 14.1176 -1.9434 -8.2588 22 14 15.7514 -0.1365 -9.5787 23 1 15.8577 1.3447 -9.5747 24 1 17.0395 -0.7270 -9.1349 25 1 15.4388 -0.6061 -10.9524 26 7 9.5237 0.4842 -5.5198 27 6 8.9005 0.6650 -6.8332 28 6 7.2473 -0.4625 -2.7751 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.9784 2.1766 0.0889 35 1 3.8514 0.5683 0.8410 36 1 5.8621 1.3963 -1.2631 37 1 5.7357 -0.2119 -0.5109 38 1 4.6730 0.2408 -4.5106 39 1 4.9621 1.6499 -3.4458 40 1 6.5708 1.0407 -5.6229 41 1 7.1737 1.9013 -4.1729 42 1 11.5218 1.7302 -6.9179 43 1 12.6975 1.6430 -5.5843 44 1 12.9891 -0.7841 -6.0000 45 1 11.8133 -0.6969 -7.3336 46 1 14.6238 -2.6103 -8.7485 47 1 8.5587 1.6951 -6.9345 48 1 9.6284 0.4452 -7.6142 49 1 8.0506 -0.0108 -6.9282 50 1 7.7840 0.2297 -2.1265 51 1 7.4957 -1.4930 -2.5212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355661323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:09 Heat of formation + Delta-G solvation = -32.041174 kcal Electronic energy + Delta-G solvation = -28994.636038 eV Core-core repulsion = 24929.888599 eV Total energy + Delta-G solvation = -4064.747439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.02534 -40.49408 -39.22815 -38.04753 -36.40009 -35.73355 -34.37101 -33.14426 -31.39472 -30.46210 -29.68803 -28.43916 -27.19478 -27.09057 -26.17559 -23.80456 -23.75585 -23.37905 -21.80901 -21.75215 -20.74204 -18.65983 -18.25468 -17.98787 -17.83653 -17.55052 -17.14520 -16.92658 -16.46566 -16.29105 -16.14699 -15.94038 -15.49210 -15.02120 -14.96853 -14.60238 -14.36492 -14.25292 -13.93204 -13.81846 -13.62740 -13.40041 -13.33465 -13.14501 -12.88935 -12.84962 -12.71175 -12.45402 -12.37794 -12.24910 -12.07683 -11.99931 -11.87205 -11.81956 -11.51242 -11.42179 -11.26890 -11.15921 -10.74402 -10.63478 -10.57884 -10.55072 -9.36446 -8.19951 -6.32618 0.74418 1.25224 1.43274 1.44772 1.57609 1.77121 2.42289 2.48754 2.77679 2.88945 3.14485 3.38289 3.50003 3.58878 3.77005 3.87902 3.98200 4.09113 4.16458 4.21954 4.23874 4.28996 4.32682 4.39910 4.42769 4.48532 4.52196 4.52792 4.56838 4.60139 4.61438 4.64724 4.66115 4.78034 4.81314 4.84623 4.87367 4.88526 4.91823 5.04178 5.13920 5.18159 5.42987 5.45315 5.52996 5.59760 5.78904 6.12025 6.17135 6.17662 6.30613 6.83882 7.37757 7.72575 8.92309 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.040577 B = 0.001643 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.881973 B =17036.701789 C =17191.062591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.060 3.940 4 C 0.056 3.944 5 O -0.394 6.394 6 C 0.073 3.927 7 C -0.082 4.082 8 H 0.094 0.906 9 C -0.101 4.101 10 C 0.031 3.969 11 N -0.429 5.429 12 C 0.342 3.658 13 N -0.358 5.358 14 N -0.332 5.332 15 C 0.196 3.804 16 C -0.013 4.013 17 C 0.041 3.959 18 C -0.538 4.538 19 H 0.074 0.926 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.255 1.255 24 H -0.284 1.284 25 H -0.278 1.278 26 N -0.479 5.479 27 C 0.068 3.932 28 C 0.060 3.940 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.049 0.951 42 H 0.099 0.901 43 H 0.088 0.912 44 H -0.019 1.019 45 H -0.006 1.006 46 H 0.263 0.737 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.061 0.939 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.778 10.552 12.127 33.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.020 4.020 5 O -0.314 6.314 6 C -0.004 4.004 7 C -0.102 4.102 8 H 0.112 0.888 9 C -0.139 4.139 10 C -0.095 4.095 11 N -0.153 5.153 12 C -0.015 4.015 13 N -0.202 5.202 14 N -0.170 5.170 15 C -0.073 4.073 16 C -0.053 4.053 17 C 0.003 3.997 18 C -0.576 4.576 19 H 0.092 0.908 20 C -0.198 4.198 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.178 1.178 24 H -0.210 1.210 25 H -0.204 1.204 26 N -0.173 5.173 27 C -0.073 4.073 28 C -0.067 4.067 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.067 0.933 42 H 0.117 0.883 43 H 0.107 0.893 44 H -0.001 1.001 45 H 0.013 0.987 46 H 0.072 0.928 47 H 0.127 0.873 48 H 0.109 0.891 49 H 0.125 0.875 50 H 0.079 0.921 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -29.255 9.530 12.919 33.370 hybrid contribution 0.654 0.437 -1.033 1.298 sum -28.601 9.967 11.886 32.537 Atomic orbital electron populations 1.22894 0.79687 1.03578 1.00855 1.87922 1.21297 1.28772 1.95607 1.22713 0.91954 0.84960 1.02037 1.22712 0.93873 0.98438 0.86958 1.87893 1.22051 1.82556 1.38915 1.22472 0.81515 0.99667 0.96707 1.21790 0.93073 1.00711 0.94587 0.88795 1.22281 0.94954 1.00364 0.96276 1.23496 0.93160 0.89666 1.03186 1.62305 0.96059 1.34012 1.22930 1.23013 0.93826 1.00846 0.83862 1.74363 0.96045 1.24346 1.25490 1.73870 1.17257 1.18373 1.07525 1.25352 0.85157 1.02508 0.94287 1.20135 0.91405 0.99249 0.94501 1.18858 0.94661 0.92230 0.93970 1.21630 1.17546 0.93942 1.24450 0.90784 1.26012 1.00092 0.94760 0.98915 1.70141 1.42443 1.01490 1.43451 0.85332 0.78100 0.79184 0.78016 1.17841 1.21017 1.20390 1.46222 1.07840 1.52336 1.10925 1.22443 1.00107 1.05262 0.79528 1.22987 0.95495 1.02995 0.85179 0.89191 0.92755 0.93391 0.89635 0.92131 0.89778 0.92617 0.92440 0.92621 0.89194 0.89124 0.87455 0.93279 0.88304 0.89316 1.00088 0.98722 0.92848 0.87280 0.89113 0.87481 0.92059 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.93 10.67 -144.34 -1.54 -8.47 16 3 C 0.06 0.67 6.32 71.98 0.45 1.13 16 4 C 0.06 0.69 6.32 71.98 0.45 1.15 16 5 O -0.39 -6.74 10.09 -144.34 -1.46 -8.20 16 6 C 0.07 1.13 5.01 71.98 0.36 1.49 16 7 C -0.08 -1.39 3.35 -9.90 -0.03 -1.43 16 8 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 9 C -0.10 -1.45 6.50 31.49 0.20 -1.25 16 10 C 0.03 0.56 5.88 86.45 0.51 1.07 16 11 N -0.43 -11.05 5.43 -692.04 -3.76 -14.81 16 12 C 0.34 11.69 7.04 260.11 1.83 13.52 16 13 N -0.36 -14.85 11.04 -58.01 -0.64 -15.49 16 14 N -0.33 -15.14 12.18 -49.54 -0.60 -15.75 16 15 C 0.20 8.04 7.32 137.64 1.01 9.05 16 16 C -0.01 -0.54 5.36 29.85 0.16 -0.38 16 17 C 0.04 2.17 4.96 29.85 0.15 2.32 16 18 C -0.54 -29.56 9.11 25.60 0.23 -29.32 16 19 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 20 C 0.00 0.00 5.46 84.65 0.46 0.47 16 21 N -0.94 -57.13 13.29 21.45 0.28 -56.85 16 22 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 23 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 N -0.48 -16.09 3.21 -538.19 -1.73 -17.82 16 27 C 0.07 1.57 9.66 127.77 1.23 2.80 16 28 C 0.06 1.39 5.61 86.45 0.48 1.88 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.09 1.14 7.66 -2.39 -0.02 1.13 16 40 H 0.11 1.54 7.01 -2.39 -0.02 1.52 16 41 H 0.05 0.95 7.97 -2.39 -0.02 0.94 16 42 H 0.10 3.43 7.95 -2.39 -0.02 3.41 16 43 H 0.09 3.62 8.14 -2.38 -0.02 3.60 16 44 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.09 2.33 7.90 -2.39 -0.02 2.31 16 49 H 0.11 2.08 7.76 -2.39 -0.02 2.06 16 50 H 0.06 1.55 7.23 -2.39 -0.02 1.54 16 51 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -78.31 415.47 2.23 -76.07 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.89 Total: 11.93 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 8.76 Total: 3.99 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -6.45 Total: -120.70 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -3.00 Total: -16.67 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -78.31 2.23 -76.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355661323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.032 kcal (2) G-P(sol) polarization free energy of solvation -78.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds