Wall clock time and date at job start Tue Mar 31 2020 20:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 120.00030 * 2 1 4 4 O 1.21281 * 120.00105 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00273 * 0.02562 * 3 2 1 6 6 N 1.46495 * 109.47276 * 179.97438 * 5 3 2 7 7 C 1.34779 * 119.99936 * 179.97438 * 6 5 3 8 8 O 1.21582 * 119.99976 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99985 * 179.97438 * 7 6 5 10 10 C 1.47025 * 125.64820 * 359.69294 * 9 7 6 11 11 C 1.54311 * 107.27646 * 180.96869 * 10 9 7 12 12 C 1.55160 * 102.86112 * 22.52707 * 11 10 9 13 13 C 1.47417 * 125.64793 * 180.02562 * 9 7 6 14 14 C 1.46500 * 119.99993 * 180.02562 * 2 1 3 15 15 C 1.53065 * 109.45413 * 299.79274 * 14 2 1 16 16 C 1.53192 * 109.29648 * 181.24177 * 15 14 2 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45577 * 59.99954 * 14 2 1 28 28 H 1.08995 * 109.46656 * 269.99583 * 1 2 3 29 29 H 1.09000 * 109.46987 * 29.99312 * 1 2 3 30 30 H 1.08997 * 109.47000 * 149.99413 * 1 2 3 31 31 H 1.09004 * 109.46576 * 299.99450 * 5 3 2 32 32 H 1.08998 * 109.47539 * 59.99261 * 5 3 2 33 33 H 0.96997 * 120.00088 * 0.02562 * 6 5 3 34 34 H 1.09005 * 109.88258 * 300.51555 * 10 9 7 35 35 H 1.09005 * 109.87999 * 61.67723 * 10 9 7 36 36 H 1.08995 * 110.92611 * 264.11197 * 11 10 9 37 37 H 1.08999 * 110.59172 * 140.78676 * 11 10 9 38 38 H 1.09004 * 111.00161 * 206.22811 * 12 11 10 39 39 H 1.09001 * 111.00488 * 82.38063 * 12 11 10 40 40 H 1.09007 * 110.36739 * 274.67192 * 13 9 7 41 41 H 1.08998 * 110.37148 * 36.88375 * 13 9 7 42 42 H 1.08992 * 109.46107 * 179.97438 * 14 2 1 43 43 H 1.09005 * 109.39523 * 61.36241 * 15 14 2 44 44 H 1.09004 * 109.62174 * 301.25928 * 15 14 2 45 45 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 46 46 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 47 47 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 48 48 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 49 49 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 50 50 H 1.09002 * 109.49883 * 58.66699 * 27 14 2 51 51 H 1.08997 * 109.52642 * 298.58007 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3855 2.4723 0.0006 6 7 2.3375 3.5858 0.0011 7 6 1.8882 4.8565 0.0011 8 8 0.6929 5.0787 0.0012 9 7 2.7641 5.8809 0.0021 10 6 4.2290 5.7558 0.0096 11 6 4.8109 7.1848 0.0328 12 6 3.6434 8.0237 0.6165 13 6 2.4119 7.3124 0.0028 14 6 2.1975 -1.2687 -0.0006 15 6 1.8314 -2.0693 1.2516 16 6 2.6225 -3.3811 1.2630 17 7 2.3849 -4.0910 -0.0012 18 6 1.9519 -5.3901 -0.0012 19 1 1.3616 -5.7626 -0.8254 20 6 2.2715 -6.2282 1.0582 21 7 3.2435 -5.9036 1.8841 22 14 1.3220 -7.8168 1.3117 23 1 1.9872 -8.9155 0.5661 24 1 1.2901 -8.1490 2.7587 25 1 -0.0662 -7.6490 0.8116 26 6 2.6211 -3.3807 -1.2655 27 6 1.8275 -2.0704 -1.2507 28 1 -0.3632 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5139 31 1 0.7586 2.5302 -0.8893 32 1 0.7591 2.5299 0.8907 33 1 3.2911 3.4085 0.0006 34 1 4.5498 5.2085 0.8960 35 1 4.5613 5.2368 -0.8895 36 1 5.0608 7.5198 -0.9739 37 1 5.6836 7.2329 0.6841 38 1 3.7024 9.0600 0.2837 39 1 3.6261 7.9650 1.7048 40 1 2.2409 7.6615 -1.0156 41 1 1.5274 7.4852 0.6158 42 1 3.2691 -1.0694 -0.0009 43 1 0.7637 -2.2885 1.2417 44 1 2.0759 -1.4892 2.1415 45 1 2.2920 -3.9999 2.0973 46 1 3.6859 -3.1656 1.3668 47 1 3.4671 -6.4894 2.6242 48 1 3.6842 -3.1629 -1.3691 49 1 2.2921 -4.0002 -2.0997 50 1 2.0688 -1.4889 -2.1405 51 1 0.7603 -2.2917 -1.2390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479887058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:20 Heat of formation + Delta-G solvation = -33.095750 kcal Electronic energy + Delta-G solvation = -29898.023564 eV Core-core repulsion = 25833.230395 eV Total energy + Delta-G solvation = -4064.793168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.68654 -39.91137 -37.92297 -37.40589 -35.23512 -34.58212 -32.59711 -31.92468 -30.36774 -29.75899 -29.40720 -27.68202 -26.92756 -24.94014 -23.71571 -22.23619 -22.03795 -21.56944 -20.26406 -19.65024 -18.92308 -18.44312 -17.06579 -16.87857 -16.77537 -16.10838 -15.94437 -15.71881 -14.96991 -14.84869 -14.52665 -13.99745 -13.85033 -13.75159 -13.61453 -13.48581 -13.26260 -13.10269 -13.01260 -12.80057 -12.63608 -12.45492 -12.36859 -12.16690 -11.79106 -11.65787 -11.51708 -11.20932 -11.15423 -10.86003 -10.73158 -10.46582 -10.41092 -10.24661 -10.12781 -9.89769 -9.74045 -9.55405 -9.43167 -8.83772 -8.58664 -8.38542 -6.71330 -5.81787 -3.24549 2.21635 2.53060 2.96098 3.04949 3.35678 3.42853 3.44746 3.72849 4.13977 4.21595 4.35898 4.46847 4.47110 4.82827 4.94551 5.01808 5.15681 5.18124 5.20475 5.28227 5.28999 5.36153 5.39180 5.40653 5.42712 5.47131 5.52549 5.61810 5.70223 5.70735 5.81759 5.89792 6.02747 6.13219 6.19433 6.26957 6.44219 6.52751 6.57983 6.73242 6.75491 6.82900 6.91471 7.30498 7.41835 7.62460 7.69606 7.76846 8.09366 8.33691 8.42025 9.17987 9.81202 10.37983 11.27008 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.001959 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.093956 B =14287.185246 C =14618.551636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.601 5.601 3 C 0.506 3.494 4 O -0.543 6.543 5 C 0.121 3.879 6 N -0.732 5.732 7 C 0.726 3.274 8 O -0.592 6.592 9 N -0.638 5.638 10 C 0.095 3.905 11 C -0.130 4.130 12 C -0.135 4.135 13 C 0.124 3.876 14 C 0.145 3.855 15 C -0.145 4.145 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.408 0.592 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.020 0.980 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.052 0.948 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 25.633 -3.447 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.333 5.333 3 C 0.293 3.707 4 O -0.422 6.422 5 C -0.007 4.007 6 N -0.390 5.390 7 C 0.427 3.573 8 O -0.470 6.470 9 N -0.377 5.377 10 C -0.028 4.028 11 C -0.168 4.168 12 C -0.173 4.173 13 C 0.001 3.999 14 C 0.043 3.957 15 C -0.185 4.185 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.021 3.979 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.131 25.572 -3.309 25.810 hybrid contribution -0.061 -1.004 0.210 1.027 sum -1.192 24.568 -3.099 24.791 Atomic orbital electron populations 1.21865 0.79600 1.03475 1.02321 1.48101 1.07229 1.06169 1.71784 1.20436 0.88095 0.85515 0.76682 1.90674 1.13743 1.86985 1.50750 1.20955 0.91565 0.83620 1.04515 1.44777 1.10973 1.03345 1.79934 1.15272 0.84307 0.79770 0.77913 1.90926 1.13562 1.83851 1.58690 1.47525 1.05910 1.05697 1.78525 1.22057 0.80211 0.98523 1.01997 1.22605 0.98299 0.93574 1.02274 1.22814 0.94066 0.99313 1.01106 1.22075 0.98254 0.78537 1.00988 1.21254 0.97260 0.80632 0.96523 1.22561 1.01736 0.98930 0.95263 1.20753 0.95315 0.88666 0.90549 1.44084 1.77811 1.10188 0.99381 1.19157 1.25938 0.86526 1.06677 0.91664 1.25065 0.96916 0.97711 0.99949 1.70027 1.28166 1.38215 1.18223 0.86307 0.79888 0.83499 0.77122 1.21375 1.21565 1.20488 1.20862 0.95798 0.90884 0.90398 1.22376 1.01478 0.98092 0.95886 0.92152 0.91210 0.90056 0.88591 0.88559 0.75434 0.91310 0.91339 0.90346 0.89810 0.89601 0.90472 0.91609 0.90289 0.88624 0.92330 0.93041 0.89131 0.96164 0.93570 0.96232 0.92395 0.92896 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.33 59.85 0.56 1.31 16 2 N -0.60 -8.38 2.76 -173.87 -0.48 -8.86 16 3 C 0.51 7.16 7.74 -10.99 -0.09 7.07 16 4 O -0.54 -9.35 14.99 5.56 0.08 -9.26 16 5 C 0.12 1.42 4.71 -5.20 -0.02 1.39 16 6 N -0.73 -8.80 5.49 -66.42 -0.36 -9.16 16 7 C 0.73 9.37 8.49 -86.91 -0.74 8.63 16 8 O -0.59 -9.48 16.60 5.29 0.09 -9.39 16 9 N -0.64 -6.31 3.33 -176.25 -0.59 -6.90 16 10 C 0.10 0.68 6.14 -3.07 -0.02 0.66 16 11 C -0.13 -0.61 6.95 -24.90 -0.17 -0.78 16 12 C -0.13 -0.66 7.08 -24.59 -0.17 -0.83 16 13 C 0.12 0.97 6.91 -2.54 -0.02 0.95 16 14 C 0.14 2.47 2.48 -67.87 -0.17 2.31 16 15 C -0.14 -2.70 5.36 -26.60 -0.14 -2.85 16 16 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 17 N -0.59 -14.51 3.00 -172.32 -0.52 -15.02 16 18 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 19 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -25.93 11.20 55.49 0.62 -25.31 16 22 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 27 C -0.14 -2.34 5.31 -26.61 -0.14 -2.48 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 30 H 0.08 0.88 6.45 -51.93 -0.34 0.55 16 31 H 0.10 1.03 7.40 -51.93 -0.38 0.64 16 32 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.41 4.78 6.42 -40.82 -0.26 4.52 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 42 H 0.10 1.86 6.90 -51.93 -0.36 1.50 16 43 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -33.42 397.17 -10.21 -43.62 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.61 Total: 2.49 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: -1.40 Total: 15.47 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -1.33 Total: -65.26 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.42 -10.21 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479887058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.527 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds