Wall clock time and date at job start Tue Mar 31 2020 20:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 120.00030 * 2 1 4 4 O 1.21281 * 120.00105 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00273 * 0.02562 * 3 2 1 6 6 N 1.46495 * 109.47276 * 179.97438 * 5 3 2 7 7 C 1.34779 * 119.99936 * 179.97438 * 6 5 3 8 8 O 1.21582 * 119.99976 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99985 * 179.97438 * 7 6 5 10 10 C 1.47025 * 125.64820 * 359.69294 * 9 7 6 11 11 C 1.54311 * 107.27646 * 180.96869 * 10 9 7 12 12 C 1.55160 * 102.86112 * 22.52707 * 11 10 9 13 13 C 1.47417 * 125.64793 * 180.02562 * 9 7 6 14 14 C 1.46500 * 119.99993 * 180.02562 * 2 1 3 15 15 C 1.53065 * 109.45413 * 299.79274 * 14 2 1 16 16 C 1.53192 * 109.29648 * 181.24177 * 15 14 2 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45577 * 59.99954 * 14 2 1 28 28 H 1.08995 * 109.46656 * 269.99583 * 1 2 3 29 29 H 1.09000 * 109.46987 * 29.99312 * 1 2 3 30 30 H 1.08997 * 109.47000 * 149.99413 * 1 2 3 31 31 H 1.09004 * 109.46576 * 299.99450 * 5 3 2 32 32 H 1.08998 * 109.47539 * 59.99261 * 5 3 2 33 33 H 0.96997 * 120.00088 * 0.02562 * 6 5 3 34 34 H 1.09005 * 109.88258 * 300.51555 * 10 9 7 35 35 H 1.09005 * 109.87999 * 61.67723 * 10 9 7 36 36 H 1.08995 * 110.92611 * 264.11197 * 11 10 9 37 37 H 1.08999 * 110.59172 * 140.78676 * 11 10 9 38 38 H 1.09004 * 111.00161 * 206.22811 * 12 11 10 39 39 H 1.09001 * 111.00488 * 82.38063 * 12 11 10 40 40 H 1.09007 * 110.36739 * 274.67192 * 13 9 7 41 41 H 1.08998 * 110.37148 * 36.88375 * 13 9 7 42 42 H 1.08992 * 109.46107 * 179.97438 * 14 2 1 43 43 H 1.09005 * 109.39523 * 61.36241 * 15 14 2 44 44 H 1.09004 * 109.62174 * 301.25928 * 15 14 2 45 45 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 46 46 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 47 47 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 48 48 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 49 49 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 50 50 H 1.09002 * 109.49883 * 58.66699 * 27 14 2 51 51 H 1.08997 * 109.52642 * 298.58007 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3855 2.4723 0.0006 6 7 2.3375 3.5858 0.0011 7 6 1.8882 4.8565 0.0011 8 8 0.6929 5.0787 0.0012 9 7 2.7641 5.8809 0.0021 10 6 4.2290 5.7558 0.0096 11 6 4.8109 7.1848 0.0328 12 6 3.6434 8.0237 0.6165 13 6 2.4119 7.3124 0.0028 14 6 2.1975 -1.2687 -0.0006 15 6 1.8314 -2.0693 1.2516 16 6 2.6225 -3.3811 1.2630 17 7 2.3849 -4.0910 -0.0012 18 6 1.9519 -5.3901 -0.0012 19 1 1.3616 -5.7626 -0.8254 20 6 2.2715 -6.2282 1.0582 21 7 3.2435 -5.9036 1.8841 22 14 1.3220 -7.8168 1.3117 23 1 1.9872 -8.9155 0.5661 24 1 1.2901 -8.1490 2.7587 25 1 -0.0662 -7.6490 0.8116 26 6 2.6211 -3.3807 -1.2655 27 6 1.8275 -2.0704 -1.2507 28 1 -0.3632 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5139 31 1 0.7586 2.5302 -0.8893 32 1 0.7591 2.5299 0.8907 33 1 3.2911 3.4085 0.0006 34 1 4.5498 5.2085 0.8960 35 1 4.5613 5.2368 -0.8895 36 1 5.0608 7.5198 -0.9739 37 1 5.6836 7.2329 0.6841 38 1 3.7024 9.0600 0.2837 39 1 3.6261 7.9650 1.7048 40 1 2.2409 7.6615 -1.0156 41 1 1.5274 7.4852 0.6158 42 1 3.2691 -1.0694 -0.0009 43 1 0.7637 -2.2885 1.2417 44 1 2.0759 -1.4892 2.1415 45 1 2.2920 -3.9999 2.0973 46 1 3.6859 -3.1656 1.3668 47 1 3.4671 -6.4894 2.6242 48 1 3.6842 -3.1629 -1.3691 49 1 2.2921 -4.0002 -2.0997 50 1 2.0688 -1.4889 -2.1405 51 1 0.7603 -2.2917 -1.2390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479887058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:19 Heat of formation + Delta-G solvation = -54.997076 kcal Electronic energy + Delta-G solvation = -29898.973277 eV Core-core repulsion = 25833.230395 eV Total energy + Delta-G solvation = -4065.742881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67884 -40.96472 -39.14778 -38.45043 -36.66928 -35.60344 -34.32060 -32.69281 -31.99032 -31.43439 -30.01810 -28.73098 -27.97993 -26.65812 -24.55127 -23.89325 -23.55838 -22.06642 -21.18989 -20.95891 -20.28145 -19.33035 -18.72975 -18.03607 -17.63017 -17.16542 -17.09961 -16.72910 -16.69762 -15.80329 -15.77705 -15.42093 -15.30037 -14.83228 -14.69383 -14.51547 -14.26703 -14.19043 -14.12530 -13.96350 -13.88926 -13.61367 -13.22185 -13.19386 -13.10963 -13.01714 -12.62214 -12.50994 -12.21219 -12.14337 -12.12214 -12.00392 -11.88776 -11.59943 -11.50172 -11.47730 -11.33483 -10.96968 -10.56579 -10.40762 -9.67924 -9.58106 -8.71607 -7.88199 -5.34136 1.34165 1.41819 1.47800 1.49271 1.58966 1.99124 2.00080 2.51497 2.92886 3.27949 3.32060 3.64871 3.67563 3.71739 3.87712 4.03891 4.06689 4.17167 4.27728 4.29573 4.30528 4.35241 4.45486 4.48448 4.61636 4.62861 4.67916 4.71510 4.85580 4.86010 4.92503 4.96256 4.99159 5.02352 5.05442 5.11630 5.12741 5.20395 5.23763 5.29367 5.35649 5.44753 5.52923 5.63849 5.69227 5.93559 6.31189 6.38344 6.80773 6.97193 7.13415 7.39347 7.83590 8.36317 9.18947 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.001959 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.093956 B =14287.185246 C =14618.551636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.598 5.598 3 C 0.507 3.493 4 O -0.578 6.578 5 C 0.130 3.870 6 N -0.731 5.731 7 C 0.719 3.281 8 O -0.628 6.628 9 N -0.639 5.639 10 C 0.088 3.912 11 C -0.122 4.122 12 C -0.125 4.125 13 C 0.115 3.885 14 C 0.155 3.845 15 C -0.127 4.127 16 C 0.181 3.819 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.267 1.267 26 C 0.143 3.857 27 C -0.122 4.122 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.059 0.941 46 H -0.010 1.010 47 H 0.250 0.750 48 H 0.008 0.992 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 27.401 -4.371 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.329 5.329 3 C 0.296 3.704 4 O -0.458 6.458 5 C 0.002 3.998 6 N -0.390 5.390 7 C 0.421 3.579 8 O -0.510 6.510 9 N -0.377 5.377 10 C -0.034 4.034 11 C -0.160 4.160 12 C -0.163 4.163 13 C -0.007 4.007 14 C 0.052 3.948 15 C -0.167 4.167 16 C 0.054 3.946 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.192 1.192 26 C 0.017 3.983 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.247 0.753 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.008 0.992 47 H 0.059 0.941 48 H 0.026 0.974 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.340 27.379 -4.260 27.807 hybrid contribution 0.375 -1.514 0.459 1.626 sum -1.965 25.865 -3.802 26.217 Atomic orbital electron populations 1.22146 0.77066 1.05024 1.03557 1.48002 1.08610 1.04823 1.71507 1.20825 0.87706 0.86196 0.75706 1.90666 1.15439 1.87475 1.52258 1.20950 0.91183 0.81919 1.05745 1.44777 1.11065 1.03324 1.79791 1.15448 0.84238 0.80310 0.77918 1.90889 1.15131 1.84427 1.60527 1.47694 1.06856 1.05925 1.77218 1.22266 0.78679 1.00480 1.02011 1.22627 0.98465 0.91543 1.03340 1.22799 0.92388 1.00171 1.00891 1.22285 0.99252 0.77792 1.01376 1.20836 0.96276 0.81988 0.95688 1.22281 1.01227 0.96578 0.96627 1.20510 0.94169 0.90384 0.89502 1.44334 1.77967 1.10069 1.00798 1.19522 1.25389 0.87536 1.06618 0.91123 1.25848 0.97874 1.01017 1.00050 1.70193 1.29886 1.39438 1.18816 0.85266 0.79007 0.79615 0.76478 1.21292 1.22084 1.19179 1.21009 0.95842 0.92541 0.88929 1.22168 1.01381 0.96041 0.96573 0.91101 0.88343 0.89886 0.87009 0.87450 0.75320 0.91436 0.91227 0.89260 0.88252 0.87323 0.90571 0.91089 0.91716 0.91281 0.91310 0.92437 0.92271 0.99209 0.94122 0.97439 0.91813 0.90824 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 9.33 127.77 1.19 2.34 16 2 N -0.60 -15.48 2.76 -822.39 -2.27 -17.75 16 3 C 0.51 13.62 7.74 87.66 0.68 14.29 16 4 O -0.58 -19.66 14.99 -3.03 -0.05 -19.71 16 5 C 0.13 2.78 4.71 85.63 0.40 3.18 16 6 N -0.73 -16.87 5.49 -482.30 -2.65 -19.52 16 7 C 0.72 18.07 8.49 179.05 1.52 19.59 16 8 O -0.63 -19.77 16.60 -3.97 -0.07 -19.84 16 9 N -0.64 -12.10 3.33 -829.80 -2.76 -14.86 16 10 C 0.09 1.14 6.14 86.72 0.53 1.67 16 11 C -0.12 -0.85 6.95 31.78 0.22 -0.63 16 12 C -0.12 -0.94 7.08 31.98 0.23 -0.71 16 13 C 0.12 1.67 6.91 86.85 0.60 2.27 16 14 C 0.16 5.16 2.48 45.03 0.11 5.28 16 15 C -0.13 -4.71 5.36 30.68 0.16 -4.55 16 16 C 0.18 8.77 5.30 86.36 0.46 9.23 16 17 N -0.61 -30.18 3.00 -699.10 -2.09 -32.27 16 18 C -0.26 -14.07 9.58 84.03 0.81 -13.27 16 19 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 20 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 21 N -0.94 -55.58 11.20 21.65 0.24 -55.34 16 22 Si 0.97 44.32 29.59 68.60 2.03 46.35 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.14 5.84 6.52 86.36 0.56 6.41 16 27 C -0.12 -3.91 5.31 30.67 0.16 -3.75 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.24 6.44 -2.39 -0.02 1.22 16 30 H 0.08 1.51 6.45 -2.39 -0.02 1.49 16 31 H 0.11 2.09 7.40 -2.38 -0.02 2.07 16 32 H 0.11 2.11 8.11 -2.39 -0.02 2.10 16 33 H 0.41 9.35 6.42 -92.71 -0.60 8.75 16 34 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 1.11 8.03 -2.39 -0.02 1.10 16 42 H 0.07 2.71 6.90 -2.39 -0.02 2.69 16 43 H 0.07 2.42 7.72 -2.38 -0.02 2.40 16 44 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.06 3.23 6.06 -2.39 -0.01 3.22 16 46 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 48 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 49 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 50 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.07 2.27 6.72 -2.39 -0.02 2.25 16 Total: -1.00 -74.39 397.17 0.77 -73.62 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.33 Total: 20.47 kcal Atomic # 6 Polarization: 30.79 SS G_CDS: 8.06 Total: 38.85 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -9.53 Total: -139.74 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.11 Total: -39.55 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.39 0.77 -73.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479887058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.625 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds