Wall clock time and date at job start Tue Mar 31 2020 20:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99853 * 2 1 4 4 C 1.50701 * 109.46985 * 293.95175 * 3 2 1 5 5 O 1.21284 * 120.00020 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99895 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99773 * 179.97438 * 6 4 3 8 8 H 1.08999 * 112.84932 * 23.81048 * 7 6 4 9 9 C 1.53784 * 113.60966 * 155.00261 * 7 6 4 10 10 C 1.53779 * 87.08055 * 139.98459 * 9 7 6 11 11 H 1.08999 * 113.61925 * 89.20183 * 10 9 7 12 12 N 1.46908 * 113.61519 * 220.01853 * 10 9 7 13 13 C 1.46900 * 110.99927 * 203.46774 * 12 10 9 14 14 C 1.50699 * 109.47088 * 179.97438 * 13 12 10 15 15 O 1.21298 * 119.99573 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00366 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00203 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99880 * 359.97438 * 17 16 14 19 19 C 1.38942 * 119.99991 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00191 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00129 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99853 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00033 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00027 * 21 19 17 25 25 C 1.53781 * 87.17484 * 334.60852 * 10 9 7 26 26 C 1.46894 * 111.00173 * 123.95181 * 2 1 3 27 27 C 1.53787 * 113.61747 * 153.54595 * 26 2 1 28 28 C 1.53779 * 87.08025 * 220.02066 * 27 26 2 29 29 C 1.53778 * 87.08236 * 25.43047 * 28 27 26 30 30 H 1.08999 * 109.46861 * 60.00424 * 1 2 3 31 31 H 1.08997 * 109.46658 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47277 * 300.00153 * 1 2 3 33 33 H 1.09005 * 109.47288 * 173.95396 * 3 2 1 34 34 H 1.09000 * 109.47381 * 53.95297 * 3 2 1 35 35 H 0.96997 * 120.00000 * 0.02562 * 6 4 3 36 36 H 1.08999 * 113.62089 * 25.43373 * 9 7 6 37 37 H 1.09000 * 113.69252 * 254.54211 * 9 7 6 38 38 H 1.00896 * 110.99614 * 79.51670 * 12 10 9 39 39 H 1.09004 * 109.47135 * 60.00186 * 13 12 10 40 40 H 1.09002 * 109.47375 * 300.00203 * 13 12 10 41 41 H 0.96998 * 119.99199 * 359.97438 * 16 14 13 42 42 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 43 43 H 1.08994 * 113.61535 * 139.93801 * 25 10 9 44 44 H 1.08997 * 113.61412 * 270.84779 * 25 10 9 45 45 H 1.08999 * 112.85003 * 284.85280 * 26 2 1 46 46 H 1.09001 * 113.60992 * 334.56579 * 27 26 2 47 47 H 1.08993 * 113.61563 * 105.47070 * 27 26 2 48 48 H 1.09001 * 113.61392 * 270.88336 * 28 27 26 49 49 H 1.09002 * 113.69099 * 139.98772 * 28 27 26 50 50 H 1.09007 * 113.61215 * 220.01817 * 29 28 27 51 51 H 1.08996 * 113.69206 * 89.13181 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0179 3.3202 -1.5234 7 6 1.6699 3.9768 -2.7859 8 1 0.7972 3.5346 -3.2664 9 6 1.6074 5.5101 -2.6859 10 6 2.2839 5.5491 -4.0663 11 1 1.5797 5.5384 -4.8982 12 7 3.3011 6.6014 -4.1936 13 6 3.5069 6.9672 -5.6014 14 6 4.5542 8.0470 -5.6919 15 8 5.0780 8.4699 -4.6829 16 7 4.9088 8.5428 -6.8940 17 6 5.8619 9.5248 -6.9763 18 1 6.3283 9.9014 -6.0779 19 6 6.2279 10.0355 -8.2156 20 7 7.1411 10.9771 -8.2946 21 14 5.4218 9.3837 -9.7695 22 1 4.2105 10.1875 -10.0734 23 1 5.0360 7.9638 -9.5688 24 1 6.3777 9.4816 -10.9017 25 6 2.8673 4.1654 -3.7351 26 6 1.9954 -0.7659 1.1376 27 6 3.3940 -1.3553 0.8891 28 6 2.9044 -2.6190 1.6159 29 6 1.4816 -2.2141 1.1958 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.0797 1.3445 0.1082 34 1 1.5610 1.9274 0.8309 35 1 2.5232 3.8014 -0.8496 36 1 2.2232 5.9211 -1.8860 37 1 0.5926 5.9080 -2.6856 38 1 4.1688 6.3195 -3.7627 39 1 2.5705 7.3335 -6.0222 40 1 3.8381 6.0915 -6.1596 41 1 4.4901 8.2043 -7.7008 42 1 7.3969 11.3334 -9.1597 43 1 2.8676 3.4778 -4.5808 44 1 3.8282 4.2079 -3.2225 45 1 1.9068 -0.2328 2.0841 46 1 3.6184 -1.5173 -0.1652 47 1 4.1896 -0.8290 1.4163 48 1 3.0655 -2.5929 2.6936 49 1 3.2469 -3.5475 1.1590 50 1 0.7334 -2.3811 1.9707 51 1 1.1819 -2.6104 0.2257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480207780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:35 Heat of formation + Delta-G solvation = -11.706903 kcal Electronic energy + Delta-G solvation = -28360.227523 eV Core-core repulsion = 24296.361844 eV Total energy + Delta-G solvation = -4063.865678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.56496 -39.68016 -38.74857 -38.10241 -35.31708 -34.62944 -33.90977 -32.62394 -31.64198 -28.92276 -27.10288 -26.57211 -25.83983 -25.68239 -24.28791 -23.29771 -22.23529 -20.74098 -20.07749 -19.77201 -19.31269 -18.29767 -17.46210 -16.88497 -16.49264 -15.97453 -15.73039 -15.66218 -15.47253 -15.14207 -14.82248 -14.68139 -14.43744 -13.94177 -13.82265 -13.44729 -13.21275 -13.07407 -12.94027 -12.80547 -12.62914 -12.46722 -12.29789 -12.12955 -12.05640 -11.93175 -11.79387 -11.34585 -11.29897 -11.18092 -11.02429 -10.99011 -10.88818 -10.68268 -10.59566 -9.98116 -9.90979 -9.57747 -9.24219 -8.73291 -8.58741 -8.19376 -8.10450 -6.31542 -3.83046 2.38253 2.75335 3.02587 3.07046 3.15181 3.60189 3.73614 4.07439 4.09520 4.12815 4.24070 4.33476 4.41057 4.46994 4.47970 4.51766 4.70604 4.76921 4.79756 4.86665 4.97438 5.01704 5.14832 5.22420 5.23445 5.28560 5.37944 5.40370 5.46962 5.52173 5.57228 5.58866 5.64255 5.71697 5.74502 5.78981 5.85084 5.86411 5.90234 5.95118 6.00703 6.34404 6.50941 6.69431 7.11668 7.27151 7.55193 7.58310 8.01092 8.14001 8.59307 8.94464 9.42056 9.82178 10.81571 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.001507 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.506893 B =18573.240095 C =18805.989995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.512 5.512 3 C 0.034 3.966 4 C 0.514 3.486 5 O -0.524 6.524 6 N -0.720 5.720 7 C 0.124 3.876 8 H 0.114 0.886 9 C -0.133 4.133 10 C 0.071 3.929 11 H 0.100 0.900 12 N -0.655 5.655 13 C 0.047 3.953 14 C 0.449 3.551 15 O -0.566 6.566 16 N -0.590 5.590 17 C -0.306 4.306 18 H 0.119 0.881 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.277 1.277 25 C -0.182 4.182 26 C 0.050 3.950 27 C -0.128 4.128 28 C -0.142 4.142 29 C -0.129 4.129 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.018 0.982 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.353 0.647 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.371 0.629 42 H 0.273 0.727 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -25.121 17.845 33.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.236 5.236 3 C -0.097 4.097 4 C 0.300 3.700 5 O -0.399 6.399 6 N -0.372 5.372 7 C 0.019 3.981 8 H 0.132 0.868 9 C -0.172 4.172 10 C -0.041 4.041 11 H 0.118 0.882 12 N -0.286 5.286 13 C -0.086 4.086 14 C 0.235 3.765 15 O -0.448 6.448 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.202 1.202 25 C -0.222 4.222 26 C -0.059 4.059 27 C -0.166 4.166 28 C -0.180 4.180 29 C -0.167 4.167 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.235 0.765 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.980 -24.820 17.464 33.414 hybrid contribution 0.008 -0.423 -0.628 0.758 sum -13.972 -25.243 16.836 33.405 Atomic orbital electron populations 1.22536 0.86535 1.02510 1.01376 1.61932 1.08701 1.11253 1.41761 1.21979 1.02302 0.90365 0.95054 1.20537 0.79141 0.81493 0.88815 1.90672 1.39035 1.63761 1.46421 1.45991 1.57772 1.13630 1.19781 1.22405 0.98550 0.92710 0.84467 0.86833 1.23460 1.01766 0.93358 0.98590 1.22821 0.95328 0.88349 0.97596 0.88226 1.60007 1.13415 1.40498 1.14665 1.21755 0.99543 0.97297 0.90003 1.19735 0.86336 0.86299 0.84130 1.90562 1.56952 1.62377 1.34924 1.42210 1.37913 1.36458 1.06390 1.19434 1.14891 1.12622 0.96503 0.86294 1.25034 0.96763 0.96506 0.97814 1.69618 1.30173 1.26672 1.25663 0.86670 0.79984 0.79102 0.83610 1.19582 1.19518 1.20188 1.24272 0.98943 0.98978 1.00043 1.23276 0.97064 0.93674 0.91838 1.22991 0.95440 0.96412 1.01762 1.22719 0.96604 0.98366 1.00346 1.22985 0.96871 0.94659 1.02167 0.89366 0.91264 0.96312 0.87852 0.91984 0.76484 0.88987 0.90613 0.82672 0.89416 0.93612 0.79669 0.91610 0.91071 0.89431 0.91641 0.89012 0.91663 0.90269 0.90990 0.91669 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.01 60.06 0.54 0.69 16 2 N -0.51 -4.25 4.46 -235.35 -1.05 -5.29 16 3 C 0.03 0.24 5.42 -4.97 -0.03 0.22 16 4 C 0.51 4.96 7.55 -10.98 -0.08 4.88 16 5 O -0.52 -7.06 13.91 5.55 0.08 -6.98 16 6 N -0.72 -5.71 5.36 -52.93 -0.28 -6.00 16 7 C 0.12 1.13 4.24 -67.02 -0.28 0.85 16 8 H 0.11 1.17 7.46 -51.93 -0.39 0.78 16 9 C -0.13 -1.22 7.63 -25.92 -0.20 -1.42 16 10 C 0.07 0.77 4.16 -66.90 -0.28 0.49 16 11 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 12 N -0.65 -9.61 6.24 -107.13 -0.67 -10.27 16 13 C 0.05 0.76 6.02 -4.98 -0.03 0.73 16 14 C 0.45 10.11 7.82 -10.99 -0.09 10.02 16 15 O -0.57 -15.08 15.78 5.54 0.09 -14.99 16 16 N -0.59 -14.02 5.09 -10.96 -0.06 -14.07 16 17 C -0.31 -8.65 10.16 -14.94 -0.15 -8.80 16 18 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 21 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.40 6.52 56.52 0.37 -5.04 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.18 -1.80 7.52 -25.83 -0.19 -1.99 16 26 C 0.05 0.32 3.20 -66.90 -0.21 0.11 16 27 C -0.13 -0.77 7.66 -25.92 -0.20 -0.97 16 28 C -0.14 -0.73 8.08 -25.92 -0.21 -0.94 16 29 C -0.13 -0.75 6.54 -25.92 -0.17 -0.92 16 30 H 0.09 0.92 5.88 -51.93 -0.31 0.61 16 31 H 0.07 0.52 6.91 -51.93 -0.36 0.16 16 32 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.10 0.60 7.91 -51.93 -0.41 0.19 16 34 H 0.06 0.35 8.12 -51.93 -0.42 -0.08 16 35 H 0.40 2.24 8.73 -40.82 -0.36 1.88 16 36 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.35 5.37 7.91 -39.29 -0.31 5.06 16 39 H 0.09 1.27 8.13 -51.93 -0.42 0.84 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.88 7.83 -51.93 -0.41 0.47 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -34.46 409.43 -9.98 -44.44 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -8.64 Total: 13.34 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.68 Total: 3.99 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -1.28 Total: -60.59 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.16 Total: -21.97 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.46 -9.98 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480207780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.729 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds