Wall clock time and date at job start Tue Mar 31 2020 20:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99853 * 2 1 4 4 C 1.50701 * 109.46985 * 293.95175 * 3 2 1 5 5 O 1.21284 * 120.00020 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99895 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99773 * 179.97438 * 6 4 3 8 8 H 1.08999 * 112.84932 * 23.81048 * 7 6 4 9 9 C 1.53784 * 113.60966 * 155.00261 * 7 6 4 10 10 C 1.53779 * 87.08055 * 139.98459 * 9 7 6 11 11 H 1.08999 * 113.61925 * 89.20183 * 10 9 7 12 12 N 1.46908 * 113.61519 * 220.01853 * 10 9 7 13 13 C 1.46900 * 110.99927 * 203.46774 * 12 10 9 14 14 C 1.50699 * 109.47088 * 179.97438 * 13 12 10 15 15 O 1.21298 * 119.99573 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00366 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00203 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99880 * 359.97438 * 17 16 14 19 19 C 1.38942 * 119.99991 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00191 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00129 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99853 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00033 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00027 * 21 19 17 25 25 C 1.53781 * 87.17484 * 334.60852 * 10 9 7 26 26 C 1.46894 * 111.00173 * 123.95181 * 2 1 3 27 27 C 1.53787 * 113.61747 * 153.54595 * 26 2 1 28 28 C 1.53779 * 87.08025 * 220.02066 * 27 26 2 29 29 C 1.53778 * 87.08236 * 25.43047 * 28 27 26 30 30 H 1.08999 * 109.46861 * 60.00424 * 1 2 3 31 31 H 1.08997 * 109.46658 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47277 * 300.00153 * 1 2 3 33 33 H 1.09005 * 109.47288 * 173.95396 * 3 2 1 34 34 H 1.09000 * 109.47381 * 53.95297 * 3 2 1 35 35 H 0.96997 * 120.00000 * 0.02562 * 6 4 3 36 36 H 1.08999 * 113.62089 * 25.43373 * 9 7 6 37 37 H 1.09000 * 113.69252 * 254.54211 * 9 7 6 38 38 H 1.00896 * 110.99614 * 79.51670 * 12 10 9 39 39 H 1.09004 * 109.47135 * 60.00186 * 13 12 10 40 40 H 1.09002 * 109.47375 * 300.00203 * 13 12 10 41 41 H 0.96998 * 119.99199 * 359.97438 * 16 14 13 42 42 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 43 43 H 1.08994 * 113.61535 * 139.93801 * 25 10 9 44 44 H 1.08997 * 113.61412 * 270.84779 * 25 10 9 45 45 H 1.08999 * 112.85003 * 284.85280 * 26 2 1 46 46 H 1.09001 * 113.60992 * 334.56579 * 27 26 2 47 47 H 1.08993 * 113.61563 * 105.47070 * 27 26 2 48 48 H 1.09001 * 113.61392 * 270.88336 * 28 27 26 49 49 H 1.09002 * 113.69099 * 139.98772 * 28 27 26 50 50 H 1.09007 * 113.61215 * 220.01817 * 29 28 27 51 51 H 1.08996 * 113.69206 * 89.13181 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0179 3.3202 -1.5234 7 6 1.6699 3.9768 -2.7859 8 1 0.7972 3.5346 -3.2664 9 6 1.6074 5.5101 -2.6859 10 6 2.2839 5.5491 -4.0663 11 1 1.5797 5.5384 -4.8982 12 7 3.3011 6.6014 -4.1936 13 6 3.5069 6.9672 -5.6014 14 6 4.5542 8.0470 -5.6919 15 8 5.0780 8.4699 -4.6829 16 7 4.9088 8.5428 -6.8940 17 6 5.8619 9.5248 -6.9763 18 1 6.3283 9.9014 -6.0779 19 6 6.2279 10.0355 -8.2156 20 7 7.1411 10.9771 -8.2946 21 14 5.4218 9.3837 -9.7695 22 1 4.2105 10.1875 -10.0734 23 1 5.0360 7.9638 -9.5688 24 1 6.3777 9.4816 -10.9017 25 6 2.8673 4.1654 -3.7351 26 6 1.9954 -0.7659 1.1376 27 6 3.3940 -1.3553 0.8891 28 6 2.9044 -2.6190 1.6159 29 6 1.4816 -2.2141 1.1958 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.0797 1.3445 0.1082 34 1 1.5610 1.9274 0.8309 35 1 2.5232 3.8014 -0.8496 36 1 2.2232 5.9211 -1.8860 37 1 0.5926 5.9080 -2.6856 38 1 4.1688 6.3195 -3.7627 39 1 2.5705 7.3335 -6.0222 40 1 3.8381 6.0915 -6.1596 41 1 4.4901 8.2043 -7.7008 42 1 7.3969 11.3334 -9.1597 43 1 2.8676 3.4778 -4.5808 44 1 3.8282 4.2079 -3.2225 45 1 1.9068 -0.2328 2.0841 46 1 3.6184 -1.5173 -0.1652 47 1 4.1896 -0.8290 1.4163 48 1 3.0655 -2.5929 2.6936 49 1 3.2469 -3.5475 1.1590 50 1 0.7334 -2.3811 1.9707 51 1 1.1819 -2.6104 0.2257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480207780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:34 Heat of formation + Delta-G solvation = -39.866994 kcal Electronic energy + Delta-G solvation = -28361.448636 eV Core-core repulsion = 24296.361844 eV Total energy + Delta-G solvation = -4065.086792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30111 -40.46868 -40.03849 -39.21407 -36.18339 -35.85662 -35.38341 -33.80981 -33.53157 -29.59188 -28.48485 -27.23642 -26.61457 -26.17070 -25.85278 -24.16722 -22.96349 -21.52658 -21.31129 -20.83212 -20.24061 -20.12694 -18.15187 -17.84562 -17.35058 -17.04964 -17.01707 -16.52181 -16.31513 -16.17911 -16.07325 -15.61910 -15.39209 -15.12989 -14.81894 -14.67905 -14.44927 -14.31719 -14.05434 -13.67895 -13.53729 -13.41122 -13.30785 -13.19063 -12.90885 -12.80463 -12.64959 -12.49245 -12.41109 -12.13090 -12.01104 -11.89929 -11.81268 -11.71929 -11.50953 -11.44751 -11.11938 -10.66939 -10.41730 -10.24452 -9.99138 -9.28850 -9.23017 -8.41148 -6.02052 1.30795 1.36039 1.44773 1.65745 1.96069 2.09978 2.23231 2.76536 3.05280 3.15382 3.38805 3.59842 3.64548 3.71627 3.80466 3.87104 3.94659 3.98026 4.02222 4.04459 4.17928 4.28894 4.32980 4.47365 4.51786 4.52892 4.57481 4.64289 4.69731 4.80748 4.82800 4.86633 4.94013 5.02202 5.04934 5.07160 5.09892 5.11073 5.17963 5.32485 5.49607 5.53124 5.62288 5.92524 5.94275 6.11450 6.17626 6.40167 6.60058 6.63611 6.88290 7.32359 7.40179 7.96575 8.76449 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.001507 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.506893 B =18573.240095 C =18805.989995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.532 5.532 3 C 0.038 3.962 4 C 0.512 3.488 5 O -0.566 6.566 6 N -0.710 5.710 7 C 0.131 3.869 8 H 0.104 0.896 9 C -0.123 4.123 10 C 0.069 3.931 11 H 0.113 0.887 12 N -0.670 5.670 13 C 0.060 3.940 14 C 0.448 3.552 15 O -0.615 6.615 16 N -0.591 5.591 17 C -0.330 4.330 18 H 0.056 0.944 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.257 1.257 23 H -0.232 1.232 24 H -0.276 1.276 25 C -0.176 4.176 26 C 0.049 3.951 27 C -0.129 4.129 28 C -0.136 4.136 29 C -0.130 4.130 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.414 0.586 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.346 0.654 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.535 -27.117 17.607 35.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.093 4.093 4 C 0.299 3.701 5 O -0.445 6.445 6 N -0.362 5.362 7 C 0.025 3.975 8 H 0.122 0.878 9 C -0.162 4.162 10 C -0.042 4.042 11 H 0.131 0.869 12 N -0.301 5.301 13 C -0.072 4.072 14 C 0.236 3.764 15 O -0.499 6.499 16 N -0.233 5.233 17 C -0.459 4.459 18 H 0.074 0.926 19 C -0.213 4.213 20 N -0.575 5.575 21 Si 0.784 3.216 22 H -0.182 1.182 23 H -0.155 1.155 24 H -0.201 1.201 25 C -0.217 4.217 26 C -0.058 4.058 27 C -0.167 4.167 28 C -0.174 4.174 29 C -0.168 4.168 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.136 0.864 34 H 0.101 0.899 35 H 0.251 0.749 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.225 0.775 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.798 -26.825 17.260 35.596 hybrid contribution 0.619 0.230 -0.415 0.780 sum -15.179 -26.596 16.845 34.950 Atomic orbital electron populations 1.22408 0.86870 1.02457 1.00620 1.61896 1.08628 1.12117 1.43055 1.22011 1.03230 0.89966 0.94099 1.21022 0.78284 0.81595 0.89226 1.90659 1.41036 1.64812 1.47963 1.45907 1.57301 1.13301 1.19685 1.22217 0.97847 0.92688 0.84790 0.87843 1.23384 1.01991 0.93169 0.97638 1.22956 0.94652 0.87579 0.98989 0.86880 1.60040 1.13861 1.42477 1.13736 1.21692 0.98107 0.95714 0.91674 1.21031 0.86199 0.86335 0.82845 1.90540 1.58725 1.64036 1.36617 1.42044 1.37471 1.35939 1.07840 1.19020 1.16883 1.14962 0.95053 0.92630 1.26098 0.96974 0.96178 1.02001 1.69799 1.32070 1.28377 1.27224 0.85372 0.78864 0.80454 0.76877 1.18151 1.15496 1.20071 1.24204 0.99095 0.98271 1.00088 1.23354 0.97121 0.93694 0.91657 1.22961 0.95630 0.97113 1.00992 1.22721 0.95779 0.97927 1.00998 1.22962 0.97605 0.94402 1.01782 0.91783 0.91022 0.95252 0.86369 0.89895 0.74929 0.88930 0.89830 0.83379 0.86698 0.90711 0.77476 0.91153 0.91410 0.89539 0.90461 0.90709 0.90690 0.88959 0.90976 0.90768 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.01 127.69 1.15 1.54 16 2 N -0.53 -8.27 4.46 -898.52 -4.01 -12.28 16 3 C 0.04 0.47 5.42 85.56 0.46 0.94 16 4 C 0.51 9.34 7.55 87.66 0.66 10.00 16 5 O -0.57 -15.22 13.91 -3.04 -0.04 -15.26 16 6 N -0.71 -10.13 5.36 -439.75 -2.36 -12.49 16 7 C 0.13 2.16 4.24 45.58 0.19 2.36 16 8 H 0.10 2.01 7.46 -2.39 -0.02 1.99 16 9 C -0.12 -1.99 7.63 31.12 0.24 -1.75 16 10 C 0.07 1.32 4.16 45.44 0.19 1.51 16 11 H 0.11 1.91 7.88 -2.39 -0.02 1.89 16 12 N -0.67 -18.38 6.24 -492.84 -3.07 -21.46 16 13 C 0.06 1.78 6.02 85.56 0.52 2.30 16 14 C 0.45 19.97 7.82 87.66 0.69 20.66 16 15 O -0.61 -33.72 15.78 -3.09 -0.05 -33.77 16 16 N -0.59 -27.74 5.09 -306.98 -1.56 -29.30 16 17 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 18 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 19 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 20 N -0.93 -56.30 13.96 21.66 0.30 -55.99 16 21 Si 0.96 38.71 27.74 68.60 1.90 40.61 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 24 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 25 C -0.18 -3.16 7.52 31.18 0.23 -2.92 16 26 C 0.05 0.56 3.20 45.44 0.15 0.70 16 27 C -0.13 -1.38 7.66 31.12 0.24 -1.14 16 28 C -0.14 -1.18 8.08 31.12 0.25 -0.92 16 29 C -0.13 -1.35 6.54 31.12 0.20 -1.15 16 30 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 31 H 0.07 1.05 6.91 -2.39 -0.02 1.04 16 32 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.12 1.12 7.91 -2.38 -0.02 1.11 16 34 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 35 H 0.41 3.76 8.73 -92.71 -0.81 2.95 16 36 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.35 10.20 7.91 -89.70 -0.71 9.49 16 39 H 0.12 2.84 8.13 -2.39 -0.02 2.82 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.39 15.10 5.76 -92.71 -0.53 14.56 16 42 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.09 1.59 7.83 -2.39 -0.02 1.57 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 51 H 0.08 1.02 7.90 -2.39 -0.02 1.00 16 Total: -1.00 -80.40 409.43 -3.55 -83.95 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -1.16 Total: 42.64 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.49 Total: 13.34 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -10.70 Total: -131.52 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.09 Total: -49.03 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.61 kcal Total: -80.40 -3.55 -83.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480207780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.087 kcal (2) G-P(sol) polarization free energy of solvation -80.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds