Wall clock time and date at job start Tue Mar 31 2020 20:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00253 * 2 1 4 4 C 1.46905 * 110.99468 * 236.04935 * 2 1 3 5 5 C 1.53005 * 109.47050 * 195.90296 * 4 2 1 6 6 C 1.50702 * 115.54624 * 39.30594 * 5 4 2 7 7 O 1.21280 * 120.00343 * 245.11237 * 6 5 4 8 8 N 1.34779 * 119.99969 * 65.11809 * 6 5 4 9 9 C 1.46497 * 120.00001 * 174.97488 * 8 6 5 10 10 H 1.09008 * 112.85259 * 334.67312 * 9 8 6 11 11 C 1.53788 * 113.61200 * 105.86257 * 9 8 6 12 12 C 1.53952 * 87.01589 * 139.95251 * 11 9 8 13 13 H 1.09001 * 113.53579 * 89.19097 * 12 11 9 14 14 N 1.46907 * 113.74225 * 220.05761 * 12 11 9 15 15 C 1.46900 * 110.99758 * 252.59930 * 14 12 11 16 16 C 1.50701 * 109.46969 * 180.02562 * 15 14 12 17 17 O 1.21294 * 119.99959 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99947 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99713 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00002 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99484 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99573 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00409 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47146 * 89.99398 * 23 21 19 25 25 H 1.48503 * 109.46887 * 210.00207 * 23 21 19 26 26 H 1.48500 * 109.46861 * 329.99684 * 23 21 19 27 27 C 1.53776 * 113.61614 * 203.47067 * 9 8 6 28 28 C 1.52995 * 117.49975 * 253.60100 * 5 4 2 29 29 C 1.52993 * 60.00020 * 252.51008 * 28 5 4 30 30 H 1.08996 * 109.47531 * 183.95464 * 1 2 3 31 31 H 1.09003 * 109.47812 * 63.94978 * 1 2 3 32 32 H 1.09002 * 109.46845 * 303.94701 * 1 2 3 33 33 H 1.09000 * 109.46886 * 60.00497 * 3 2 1 34 34 H 1.08999 * 109.47037 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47119 * 300.00598 * 3 2 1 36 36 H 1.08999 * 109.47071 * 315.90024 * 4 2 1 37 37 H 1.09003 * 109.47081 * 75.90312 * 4 2 1 38 38 H 0.96999 * 119.99960 * 354.97915 * 8 6 5 39 39 H 1.08993 * 113.61729 * 254.53056 * 11 9 8 40 40 H 1.08997 * 113.60850 * 25.43517 * 11 9 8 41 41 H 1.00897 * 111.00027 * 128.65110 * 14 12 11 42 42 H 1.09001 * 109.47337 * 300.00130 * 15 14 12 43 43 H 1.09003 * 109.47387 * 59.99903 * 15 14 12 44 44 H 0.97002 * 120.00038 * 359.97438 * 18 16 15 45 45 H 0.96996 * 119.99993 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.61354 * 334.57084 * 27 9 8 47 47 H 1.08998 * 113.61349 * 105.47722 * 27 9 8 48 48 H 1.09004 * 117.49733 * 359.97438 * 28 5 4 49 49 H 1.09000 * 117.49952 * 145.01998 * 28 5 4 50 50 H 1.08999 * 117.50112 * 252.51153 * 29 28 5 51 51 H 1.08997 * 117.50345 * 107.48979 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 -1.1377 5 6 3.4733 -1.0822 -0.8996 6 6 3.8402 -1.4459 0.5161 7 8 4.5750 -0.7243 1.1566 8 7 3.3518 -2.5732 1.0704 9 6 3.7942 -2.9842 2.4051 10 1 4.7810 -2.5986 2.6615 11 6 2.7398 -2.7556 3.5011 12 6 3.1732 -4.1111 4.0884 13 1 3.9898 -4.0334 4.8062 14 7 2.0553 -4.9264 4.5821 15 6 2.0386 -4.9626 6.0506 16 6 0.8814 -5.8067 6.5190 17 8 0.1435 -6.3273 5.7093 18 7 0.6664 -5.9831 7.8378 19 6 -0.3868 -6.7506 8.2640 20 1 -1.0443 -7.2134 7.5430 21 6 -0.6081 -6.9329 9.6236 22 7 -1.6173 -7.6690 10.0320 23 14 0.5287 -6.1318 10.8707 24 1 0.0100 -4.7849 11.2197 25 1 0.5909 -6.9709 12.0944 26 1 1.8890 -6.0030 10.2893 27 6 3.6332 -4.4903 2.6708 28 6 4.5035 -0.3021 -1.7187 29 6 4.2379 -1.7766 -2.0283 30 1 -0.3634 -1.0251 0.0709 31 1 -0.3635 0.4513 -0.9232 32 1 -0.3633 0.5739 0.8525 33 1 1.6460 1.8947 0.8900 34 1 3.0851 1.3423 -0.0005 35 1 1.6459 1.8948 -0.8899 36 1 1.4365 -1.6963 -1.2390 37 1 1.8918 -0.1787 -2.0501 38 1 2.7075 -3.1123 0.5856 39 1 2.9604 -1.9074 4.1491 40 1 1.7160 -2.7490 3.1273 41 1 2.0904 -5.8587 4.1979 42 1 2.9720 -5.3925 6.4141 43 1 1.9301 -3.9495 6.4379 44 1 1.2567 -5.5671 8.4854 45 1 -1.7720 -7.7960 10.9811 46 1 2.8540 -4.9588 2.0697 47 1 4.5739 -5.0404 2.6496 48 1 4.1283 0.4361 -2.4275 49 1 5.4469 -0.0517 -1.2337 50 1 5.0065 -2.4964 -1.7469 51 1 3.6880 -2.0083 -2.9404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480220663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:52 Heat of formation + Delta-G solvation = -9.024046 kcal Electronic energy + Delta-G solvation = -29255.527504 eV Core-core repulsion = 25191.778163 eV Total energy + Delta-G solvation = -4063.749341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61009 -39.26045 -38.26436 -37.52864 -36.08188 -34.58149 -33.84612 -32.43496 -31.61517 -28.39171 -27.85445 -27.07838 -25.76127 -24.88147 -23.71273 -22.88020 -22.53697 -21.75879 -20.21527 -19.48034 -19.16064 -18.26631 -17.22234 -16.75313 -16.00344 -15.88316 -15.60860 -15.38974 -15.36449 -15.25643 -14.75487 -14.69893 -14.23275 -14.12174 -13.87474 -13.37474 -13.15567 -12.95155 -12.75456 -12.62188 -12.46884 -12.35240 -12.21134 -12.15307 -12.03984 -11.97156 -11.93024 -11.82166 -11.28839 -11.10973 -10.99025 -10.89127 -10.59604 -10.56960 -10.43602 -9.96227 -9.83458 -9.55608 -9.04067 -8.71917 -8.54740 -8.17779 -8.11201 -6.29732 -3.81022 2.50444 2.96990 3.04054 3.08784 3.16483 3.25648 3.57313 3.76410 4.11350 4.20307 4.29459 4.34486 4.40470 4.47456 4.49686 4.71112 4.83387 4.86123 4.90762 4.94578 5.03922 5.08113 5.09342 5.16375 5.23653 5.31517 5.34377 5.36209 5.45381 5.49135 5.57855 5.61461 5.67770 5.68314 5.72645 5.74284 5.80432 5.94880 5.97533 6.07690 6.20166 6.53000 6.62878 6.66499 7.19191 7.46301 7.59730 7.61608 8.16151 8.18607 8.61516 8.96498 9.44209 9.84675 10.83417 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.001919 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.146361 B =14590.110390 C =15045.782031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.096 3.904 5 C -0.155 4.155 6 C 0.574 3.426 7 O -0.543 6.543 8 N -0.707 5.707 9 C 0.126 3.874 10 H 0.109 0.891 11 C -0.132 4.132 12 C 0.060 3.940 13 H 0.073 0.927 14 N -0.653 5.653 15 C 0.047 3.953 16 C 0.450 3.550 17 O -0.566 6.566 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.148 4.148 28 C -0.148 4.148 29 C -0.157 4.157 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.022 0.978 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.351 0.649 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.371 0.629 45 H 0.273 0.727 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.100 0.900 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.220 15.269 -23.815 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.123 4.123 4 C -0.032 4.032 5 C -0.159 4.159 6 C 0.359 3.641 7 O -0.419 6.419 8 N -0.356 5.356 9 C 0.020 3.980 10 H 0.127 0.873 11 C -0.171 4.171 12 C -0.051 4.051 13 H 0.091 0.909 14 N -0.286 5.286 15 C -0.086 4.086 16 C 0.236 3.764 17 O -0.447 6.447 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.187 4.187 28 C -0.185 4.185 29 C -0.194 4.194 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.235 0.765 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.118 0.882 49 H 0.122 0.878 50 H 0.119 0.881 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.815 15.599 -23.315 30.840 hybrid contribution 0.838 0.147 0.504 0.989 sum 13.654 15.745 -22.811 30.898 Atomic orbital electron populations 1.22396 0.86666 1.02664 1.00571 1.61857 1.08056 1.14487 1.42170 1.22422 1.01515 0.88117 1.00275 1.21595 0.91150 0.98530 0.91937 1.21520 0.94821 1.07980 0.91586 1.19054 0.78699 0.80160 0.86144 1.90669 1.37921 1.50168 1.63164 1.45750 1.45911 1.25665 1.18279 1.22303 0.99168 0.94499 0.81987 0.87303 1.23553 1.00129 0.96686 0.96779 1.22864 0.92368 0.95572 0.94275 0.90869 1.60190 1.42890 1.19200 1.06303 1.21776 0.96898 1.00716 0.89216 1.19739 0.88002 0.85762 0.82873 1.90559 1.49056 1.52031 1.53097 1.42220 1.28330 1.46932 1.05608 1.19430 1.05131 1.25653 0.93087 0.86299 1.25045 0.96947 0.97251 0.96996 1.69624 1.28506 1.38110 1.15962 0.86664 0.80655 0.80111 0.81912 1.19585 1.20212 1.19526 1.23610 1.02003 0.95854 0.97183 1.23061 1.00015 0.94409 1.01030 1.23068 1.02171 0.96217 0.97979 0.91034 0.95747 0.91047 0.91420 0.90624 0.95930 0.89947 0.93672 0.76548 0.91539 0.88659 0.82847 0.93739 0.89452 0.79680 0.91640 0.88694 0.90934 0.88196 0.87759 0.88115 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.54 60.06 0.57 0.76 16 2 N -0.54 -4.70 4.29 -251.26 -1.08 -5.77 16 3 C 0.02 0.21 9.43 60.06 0.57 0.78 16 4 C 0.10 0.67 5.06 -3.82 -0.02 0.65 16 5 C -0.16 -1.20 1.46 -155.66 -0.23 -1.43 16 6 C 0.57 6.18 6.40 -10.98 -0.07 6.11 16 7 O -0.54 -7.92 16.35 5.56 0.09 -7.83 16 8 N -0.71 -6.60 5.36 -53.01 -0.28 -6.88 16 9 C 0.13 1.28 4.18 -67.12 -0.28 0.99 16 10 H 0.11 1.21 7.57 -51.92 -0.39 0.82 16 11 C -0.13 -1.55 7.70 -25.82 -0.20 -1.75 16 12 C 0.06 0.70 4.14 -66.81 -0.28 0.42 16 13 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 14 N -0.65 -9.91 6.19 -107.03 -0.66 -10.57 16 15 C 0.05 0.78 6.01 -4.98 -0.03 0.75 16 16 C 0.45 10.28 7.82 -10.98 -0.09 10.19 16 17 O -0.57 -15.19 15.78 5.55 0.09 -15.11 16 18 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 19 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 20 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.90 13.96 55.50 0.77 -25.12 16 23 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 27 C -0.15 -1.37 7.40 -25.92 -0.19 -1.56 16 28 C -0.15 -1.01 9.29 -26.74 -0.25 -1.26 16 29 C -0.16 -0.89 9.95 -26.74 -0.27 -1.15 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.74 7.04 -51.93 -0.37 0.37 16 35 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.08 0.49 7.96 -51.93 -0.41 0.07 16 37 H 0.05 0.27 7.85 -51.93 -0.41 -0.13 16 38 H 0.40 3.04 8.72 -40.82 -0.36 2.69 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.35 5.44 8.24 -39.29 -0.32 5.12 16 42 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 43 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 49 H 0.10 0.85 7.99 -51.93 -0.41 0.44 16 50 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 418.02 15.07 6.30 6.30 Total: -1.00 -34.73 418.02 -9.33 -44.06 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -8.78 Total: 14.68 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.00 Total: 5.70 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -1.30 Total: -62.61 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.18 Total: -22.94 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.73 -9.33 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480220663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.031 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds