Wall clock time and date at job start Tue Mar 31 2020 20:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00253 * 2 1 4 4 C 1.46905 * 110.99468 * 236.04935 * 2 1 3 5 5 C 1.53005 * 109.47050 * 195.90296 * 4 2 1 6 6 C 1.50702 * 115.54624 * 39.30594 * 5 4 2 7 7 O 1.21280 * 120.00343 * 245.11237 * 6 5 4 8 8 N 1.34779 * 119.99969 * 65.11809 * 6 5 4 9 9 C 1.46497 * 120.00001 * 174.97488 * 8 6 5 10 10 H 1.09008 * 112.85259 * 334.67312 * 9 8 6 11 11 C 1.53788 * 113.61200 * 105.86257 * 9 8 6 12 12 C 1.53952 * 87.01589 * 139.95251 * 11 9 8 13 13 H 1.09001 * 113.53579 * 89.19097 * 12 11 9 14 14 N 1.46907 * 113.74225 * 220.05761 * 12 11 9 15 15 C 1.46900 * 110.99758 * 252.59930 * 14 12 11 16 16 C 1.50701 * 109.46969 * 180.02562 * 15 14 12 17 17 O 1.21294 * 119.99959 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99947 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99713 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00002 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99484 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99573 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00409 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47146 * 89.99398 * 23 21 19 25 25 H 1.48503 * 109.46887 * 210.00207 * 23 21 19 26 26 H 1.48500 * 109.46861 * 329.99684 * 23 21 19 27 27 C 1.53776 * 113.61614 * 203.47067 * 9 8 6 28 28 C 1.52995 * 117.49975 * 253.60100 * 5 4 2 29 29 C 1.52993 * 60.00020 * 252.51008 * 28 5 4 30 30 H 1.08996 * 109.47531 * 183.95464 * 1 2 3 31 31 H 1.09003 * 109.47812 * 63.94978 * 1 2 3 32 32 H 1.09002 * 109.46845 * 303.94701 * 1 2 3 33 33 H 1.09000 * 109.46886 * 60.00497 * 3 2 1 34 34 H 1.08999 * 109.47037 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47119 * 300.00598 * 3 2 1 36 36 H 1.08999 * 109.47071 * 315.90024 * 4 2 1 37 37 H 1.09003 * 109.47081 * 75.90312 * 4 2 1 38 38 H 0.96999 * 119.99960 * 354.97915 * 8 6 5 39 39 H 1.08993 * 113.61729 * 254.53056 * 11 9 8 40 40 H 1.08997 * 113.60850 * 25.43517 * 11 9 8 41 41 H 1.00897 * 111.00027 * 128.65110 * 14 12 11 42 42 H 1.09001 * 109.47337 * 300.00130 * 15 14 12 43 43 H 1.09003 * 109.47387 * 59.99903 * 15 14 12 44 44 H 0.97002 * 120.00038 * 359.97438 * 18 16 15 45 45 H 0.96996 * 119.99993 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.61354 * 334.57084 * 27 9 8 47 47 H 1.08998 * 113.61349 * 105.47722 * 27 9 8 48 48 H 1.09004 * 117.49733 * 359.97438 * 28 5 4 49 49 H 1.09000 * 117.49952 * 145.01998 * 28 5 4 50 50 H 1.08999 * 117.50112 * 252.51153 * 29 28 5 51 51 H 1.08997 * 117.50345 * 107.48979 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 -1.1377 5 6 3.4733 -1.0822 -0.8996 6 6 3.8402 -1.4459 0.5161 7 8 4.5750 -0.7243 1.1566 8 7 3.3518 -2.5732 1.0704 9 6 3.7942 -2.9842 2.4051 10 1 4.7810 -2.5986 2.6615 11 6 2.7398 -2.7556 3.5011 12 6 3.1732 -4.1111 4.0884 13 1 3.9898 -4.0334 4.8062 14 7 2.0553 -4.9264 4.5821 15 6 2.0386 -4.9626 6.0506 16 6 0.8814 -5.8067 6.5190 17 8 0.1435 -6.3273 5.7093 18 7 0.6664 -5.9831 7.8378 19 6 -0.3868 -6.7506 8.2640 20 1 -1.0443 -7.2134 7.5430 21 6 -0.6081 -6.9329 9.6236 22 7 -1.6173 -7.6690 10.0320 23 14 0.5287 -6.1318 10.8707 24 1 0.0100 -4.7849 11.2197 25 1 0.5909 -6.9709 12.0944 26 1 1.8890 -6.0030 10.2893 27 6 3.6332 -4.4903 2.6708 28 6 4.5035 -0.3021 -1.7187 29 6 4.2379 -1.7766 -2.0283 30 1 -0.3634 -1.0251 0.0709 31 1 -0.3635 0.4513 -0.9232 32 1 -0.3633 0.5739 0.8525 33 1 1.6460 1.8947 0.8900 34 1 3.0851 1.3423 -0.0005 35 1 1.6459 1.8948 -0.8899 36 1 1.4365 -1.6963 -1.2390 37 1 1.8918 -0.1787 -2.0501 38 1 2.7075 -3.1123 0.5856 39 1 2.9604 -1.9074 4.1491 40 1 1.7160 -2.7490 3.1273 41 1 2.0904 -5.8587 4.1979 42 1 2.9720 -5.3925 6.4141 43 1 1.9301 -3.9495 6.4379 44 1 1.2567 -5.5671 8.4854 45 1 -1.7720 -7.7960 10.9811 46 1 2.8540 -4.9588 2.0697 47 1 4.5739 -5.0404 2.6496 48 1 4.1283 0.4361 -2.4275 49 1 5.4469 -0.0517 -1.2337 50 1 5.0065 -2.4964 -1.7469 51 1 3.6880 -2.0083 -2.9404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480220663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:51 Heat of formation + Delta-G solvation = -37.440650 kcal Electronic energy + Delta-G solvation = -29256.759741 eV Core-core repulsion = 25191.778163 eV Total energy + Delta-G solvation = -4064.981577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38676 -40.41640 -39.74655 -38.32761 -36.69219 -36.14168 -35.39885 -33.77601 -33.41379 -29.00134 -28.56204 -28.47388 -26.64292 -26.18003 -25.03404 -23.36635 -23.22735 -22.59106 -21.34248 -21.02018 -20.35480 -19.92564 -17.94109 -17.86944 -17.26128 -16.98985 -16.61275 -16.50976 -16.25517 -16.16373 -16.08317 -15.48242 -15.42101 -15.10011 -14.95055 -14.81095 -14.43022 -14.33481 -14.02842 -13.50540 -13.37369 -13.33231 -13.28447 -13.08352 -12.90490 -12.89320 -12.82491 -12.56703 -12.44890 -12.41027 -12.17018 -12.00688 -11.89955 -11.52409 -11.48375 -11.43735 -10.97411 -10.67688 -10.41063 -10.24446 -9.88844 -9.30964 -9.29297 -8.41133 -6.01805 1.30378 1.35898 1.44394 1.72623 1.95947 2.22959 2.24553 2.67665 2.79546 3.01831 3.15234 3.45204 3.59668 3.67187 3.75158 3.82673 3.87151 4.00450 4.05241 4.13387 4.18009 4.29995 4.38338 4.43248 4.53054 4.53990 4.54813 4.60109 4.72727 4.74696 4.77139 4.83450 4.89650 4.92418 4.97472 5.03544 5.03978 5.07164 5.14755 5.20406 5.26062 5.53601 5.69497 5.92864 6.04662 6.08218 6.13098 6.43949 6.60178 6.70572 6.88273 7.39859 7.40144 7.96408 8.76422 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.001919 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.146361 B =14590.110390 C =15045.782031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.563 5.563 3 C 0.030 3.970 4 C 0.099 3.901 5 C -0.166 4.166 6 C 0.570 3.430 7 O -0.587 6.587 8 N -0.699 5.699 9 C 0.131 3.869 10 H 0.101 0.899 11 C -0.133 4.133 12 C 0.061 3.939 13 H 0.090 0.910 14 N -0.670 5.670 15 C 0.061 3.939 16 C 0.449 3.551 17 O -0.613 6.613 18 N -0.592 5.592 19 C -0.328 4.328 20 H 0.056 0.944 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.259 1.259 25 H -0.275 1.275 26 H -0.231 1.231 27 C -0.131 4.131 28 C -0.153 4.153 29 C -0.135 4.135 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.410 0.590 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.348 0.652 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.116 0.884 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.611 16.328 -24.470 33.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.287 5.287 3 C -0.118 4.118 4 C -0.029 4.029 5 C -0.170 4.170 6 C 0.358 3.642 7 O -0.467 6.467 8 N -0.348 5.348 9 C 0.025 3.975 10 H 0.119 0.881 11 C -0.173 4.173 12 C -0.049 4.049 13 H 0.108 0.892 14 N -0.302 5.302 15 C -0.072 4.072 16 C 0.237 3.763 17 O -0.498 6.498 18 N -0.234 5.234 19 C -0.457 4.457 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.575 5.575 23 Si 0.784 3.216 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.155 1.155 27 C -0.169 4.169 28 C -0.190 4.190 29 C -0.172 4.172 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.246 0.754 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.168 0.832 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.116 0.884 47 H 0.109 0.891 48 H 0.134 0.866 49 H 0.103 0.897 50 H 0.117 0.883 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.213 16.653 -24.005 32.939 hybrid contribution 0.013 -0.209 0.605 0.640 sum 15.226 16.444 -23.400 32.401 Atomic orbital electron populations 1.22365 0.86100 1.02730 1.00843 1.61841 1.08726 1.14603 1.43532 1.22315 1.00449 0.88464 1.00555 1.21644 0.90449 0.99006 0.91791 1.21483 0.95620 1.09634 0.90252 1.19586 0.77795 0.79680 0.87179 1.90644 1.39994 1.51551 1.64555 1.45710 1.45703 1.25434 1.17955 1.22155 0.98163 0.95173 0.81984 0.88078 1.23508 0.99674 0.96693 0.97442 1.22957 0.91665 0.94639 0.95683 0.89225 1.60156 1.45197 1.19445 1.05445 1.21697 0.94899 1.00306 0.90279 1.20990 0.88614 0.84715 0.81956 1.90537 1.51152 1.53753 1.54309 1.42058 1.27728 1.46916 1.06685 1.19011 1.06476 1.27434 0.92774 0.92575 1.26117 0.98824 0.97400 0.99122 1.69803 1.30899 1.39781 1.16973 0.85370 0.79494 0.78868 0.77834 1.18317 1.19961 1.15456 1.23504 1.02847 0.95184 0.95383 1.23088 0.98991 0.95838 1.01095 1.23172 1.01243 0.95168 0.97640 0.90888 0.94521 0.91880 0.92286 0.92190 0.94488 0.88763 0.92244 0.75386 0.92405 0.90271 0.83204 0.90343 0.87454 0.77514 0.91158 0.88387 0.89058 0.86611 0.89683 0.88253 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.54 127.69 1.22 1.60 16 2 N -0.56 -9.24 4.29 -948.83 -4.07 -13.31 16 3 C 0.03 0.50 9.43 127.69 1.20 1.71 16 4 C 0.10 1.18 5.06 86.30 0.44 1.61 16 5 C -0.17 -2.33 1.46 -52.93 -0.08 -2.41 16 6 C 0.57 11.95 6.40 87.66 0.56 12.51 16 7 O -0.59 -17.38 16.35 -3.03 -0.05 -17.43 16 8 N -0.70 -12.28 5.36 -440.02 -2.36 -14.64 16 9 C 0.13 2.48 4.18 45.52 0.19 2.67 16 10 H 0.10 2.15 7.57 -2.38 -0.02 2.13 16 11 C -0.13 -2.99 7.70 31.18 0.24 -2.75 16 12 C 0.06 1.26 4.14 45.50 0.19 1.45 16 13 H 0.09 1.63 7.87 -2.39 -0.02 1.61 16 14 N -0.67 -19.11 6.19 -492.53 -3.05 -22.16 16 15 C 0.06 1.86 6.01 85.56 0.51 2.37 16 16 C 0.45 20.33 7.82 87.66 0.69 21.02 16 17 O -0.61 -33.92 15.78 -3.07 -0.05 -33.96 16 18 N -0.59 -28.13 5.09 -306.98 -1.56 -29.69 16 19 C -0.33 -19.32 10.16 84.04 0.85 -18.46 16 20 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 21 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 22 N -0.93 -56.56 13.96 21.66 0.30 -56.26 16 23 Si 0.96 39.12 27.74 68.60 1.90 41.02 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 27 C -0.13 -2.11 7.40 31.12 0.23 -1.88 16 28 C -0.15 -1.90 9.29 30.59 0.28 -1.61 16 29 C -0.13 -1.20 9.95 30.59 0.30 -0.90 16 30 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 31 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.18 7.04 -2.39 -0.02 1.17 16 35 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.09 0.88 7.96 -2.39 -0.02 0.86 16 37 H 0.06 0.56 7.85 -2.39 -0.02 0.54 16 38 H 0.41 5.58 8.72 -92.71 -0.81 4.77 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.35 10.31 8.24 -89.70 -0.74 9.57 16 42 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 43 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.39 15.35 5.76 -92.71 -0.53 14.82 16 45 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.10 1.57 8.11 -2.39 -0.02 1.55 16 47 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.12 1.03 8.08 -2.38 -0.02 1.01 16 49 H 0.08 1.40 7.99 -2.39 -0.02 1.38 16 50 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -81.41 418.02 -2.82 -84.23 By element: Atomic # 1 Polarization: 46.89 SS G_CDS: -1.19 Total: 45.69 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 7.30 Total: 16.51 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -10.73 Total: -136.06 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -0.10 Total: -51.40 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.02 kcal Total: -81.41 -2.82 -84.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480220663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.793 kcal (2) G-P(sol) polarization free energy of solvation -81.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds