Wall clock time and date at job start Tue Mar 31 2020 20:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00042 * 2 1 4 4 H 1.08001 * 120.00523 * 202.06837 * 3 2 1 5 5 C 1.38819 * 119.99901 * 22.07461 * 3 2 1 6 6 N 1.31617 * 119.99823 * 12.39590 * 5 3 2 7 7 Si 1.86796 * 120.00135 * 192.39757 * 5 3 2 8 8 H 1.48502 * 109.47016 * 89.99686 * 7 5 3 9 9 H 1.48496 * 109.47249 * 209.99984 * 7 5 3 10 10 H 1.48499 * 109.47231 * 330.00052 * 7 5 3 11 11 C 1.46498 * 119.99889 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.49839 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.52763 * 59.85409 * 11 2 1 14 14 C 1.53036 * 109.53585 * 178.66944 * 13 11 2 15 15 C 1.52755 * 109.38706 * 61.23833 * 14 13 11 16 16 N 1.46926 * 109.00918 * 305.58269 * 15 14 13 17 17 C 1.34771 * 120.63506 * 233.58638 * 16 15 14 18 18 O 1.21276 * 120.00142 * 179.72021 * 17 16 15 19 19 C 1.50705 * 119.99941 * 359.72357 * 17 16 15 20 20 N 1.46498 * 109.47216 * 180.02562 * 19 17 16 21 21 C 1.34778 * 119.99744 * 179.97438 * 20 19 17 22 22 O 1.21583 * 120.00151 * 359.97438 * 21 20 19 23 23 N 1.34776 * 119.99403 * 179.97438 * 21 20 19 24 24 C 1.47026 * 125.64485 * 180.02562 * 23 21 20 25 25 C 1.54327 * 107.40164 * 180.94780 * 24 23 21 26 26 C 1.55547 * 102.76288 * 22.23496 * 25 24 23 27 27 C 1.47430 * 125.65426 * 359.95852 * 23 21 20 28 28 C 1.46929 * 118.73327 * 53.31250 * 16 15 14 29 29 H 1.09002 * 109.46440 * 274.29974 * 1 2 3 30 30 H 1.08997 * 109.47511 * 34.30229 * 1 2 3 31 31 H 1.08998 * 109.46837 * 154.30529 * 1 2 3 32 32 H 0.96999 * 119.99638 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.45262 * 298.68592 * 13 11 2 34 34 H 1.08990 * 109.45865 * 58.64300 * 13 11 2 35 35 H 1.09004 * 109.49082 * 181.31721 * 14 13 11 36 36 H 1.08998 * 109.49711 * 301.40543 * 14 13 11 37 37 H 1.09001 * 109.50872 * 185.70515 * 15 14 13 38 38 H 1.09002 * 109.43349 * 65.42206 * 15 14 13 39 39 H 1.08993 * 109.47328 * 59.99630 * 19 17 16 40 40 H 1.09002 * 109.46393 * 299.99964 * 19 17 16 41 41 H 0.97001 * 119.99841 * 359.97438 * 20 19 17 42 42 H 1.09002 * 109.88102 * 300.43902 * 24 23 21 43 43 H 1.08995 * 109.88321 * 61.44901 * 24 23 21 44 44 H 1.08998 * 110.71855 * 140.63127 * 25 24 23 45 45 H 1.08995 * 110.71883 * 263.90541 * 25 24 23 46 46 H 1.08996 * 110.96906 * 206.40307 * 26 25 24 47 47 H 1.09004 * 111.05868 * 82.57506 * 26 25 24 48 48 H 1.09002 * 110.36482 * 274.74810 * 27 23 21 49 49 H 1.09004 * 110.36170 * 36.95936 * 27 23 21 50 50 H 1.08997 * 109.59014 * 66.42850 * 28 16 15 51 51 H 1.08999 * 109.58290 * 186.71484 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2202 -0.3514 5 6 1.5319 2.3440 0.4518 6 7 0.3899 2.2700 1.1019 7 14 2.3213 4.0075 0.1371 8 1 1.8347 4.5494 -1.1571 9 1 1.9595 4.9423 1.2326 10 1 3.7974 3.8531 0.0854 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0701 -0.0009 13 6 1.8259 -2.0734 -1.2482 14 6 2.6158 -3.3840 -1.2659 15 6 2.2555 -4.2099 -0.0325 16 7 2.4689 -3.3927 1.1697 17 6 3.2425 -3.8426 2.1775 18 8 3.4150 -3.1563 3.1624 19 6 3.8932 -5.1984 2.0805 20 7 4.6747 -5.4530 3.2932 21 6 5.3481 -6.6124 3.4298 22 8 5.3067 -7.4472 2.5469 23 7 6.0674 -6.8463 4.5453 24 6 6.8464 -8.0619 4.8233 25 6 7.4790 -7.8951 6.2211 26 6 6.5578 -6.8358 6.8910 27 6 6.2047 -5.9252 5.6883 28 6 1.8279 -2.0730 1.2498 29 1 -0.3632 0.0771 1.0248 30 1 -0.3634 0.8489 -0.5791 31 1 -0.3633 -0.9260 -0.4456 32 1 -0.0419 3.0793 1.4173 33 1 0.7583 -2.2929 -1.2340 34 1 2.0652 -1.4930 -2.1392 35 1 2.3681 -3.9458 -2.1666 36 1 3.6836 -3.1654 -1.2552 37 1 2.8894 -5.0956 0.0105 38 1 1.2090 -4.5095 -0.0896 39 1 4.5510 -5.2244 1.2118 40 1 3.1241 -5.9638 1.9769 41 1 4.7074 -4.7871 3.9978 42 1 6.1906 -8.9325 4.8148 43 1 7.6290 -8.1802 4.0739 44 1 7.4521 -8.8356 6.7712 45 1 8.5004 -7.5234 6.1402 46 1 7.0969 -6.2789 7.6573 47 1 5.6632 -7.3006 7.3053 48 1 7.0068 -5.2103 5.5050 49 1 5.2654 -5.4025 5.8690 50 1 0.7459 -2.1948 1.2992 51 1 2.1779 -1.5502 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480725258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:41 Heat of formation + Delta-G solvation = -30.152918 kcal Electronic energy + Delta-G solvation = -30093.624068 eV Core-core repulsion = 26028.958510 eV Total energy + Delta-G solvation = -4064.665558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.63618 -39.87729 -37.90211 -37.39644 -35.15794 -34.53524 -32.47933 -31.88776 -31.31719 -29.54829 -29.09567 -27.53414 -26.02586 -24.90516 -23.79845 -23.23266 -21.72697 -21.54145 -20.20047 -19.84508 -18.86155 -18.30781 -17.02237 -16.82531 -16.64190 -16.17683 -15.81702 -15.50606 -15.08258 -14.70816 -14.35383 -14.18346 -13.92482 -13.84251 -13.73095 -13.53926 -13.45076 -13.08503 -12.88385 -12.68544 -12.61453 -12.37969 -12.21439 -11.89699 -11.71689 -11.66834 -11.19375 -11.16977 -11.03475 -10.82032 -10.65399 -10.42930 -10.41279 -10.36214 -10.20356 -9.91765 -9.79214 -9.67457 -9.38774 -8.78353 -8.61705 -8.39549 -6.78958 -5.73931 -3.19959 2.26768 2.63204 3.01436 3.11666 3.38425 3.44547 3.45962 3.77647 4.15474 4.24890 4.40863 4.47979 4.51403 4.88164 4.89600 4.97433 5.09659 5.18371 5.21090 5.24021 5.27786 5.33050 5.41868 5.42261 5.48783 5.49813 5.55929 5.56471 5.71909 5.75277 5.87026 5.95125 5.95954 6.09383 6.19734 6.21515 6.35021 6.46418 6.60280 6.74574 6.80848 6.89595 6.94466 7.37152 7.52965 7.70361 7.74790 7.80185 8.19388 8.38050 8.39079 9.21757 9.84163 10.32285 11.30787 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.002325 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.559027 B =12041.559592 C =13150.303398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.132 4.132 15 C 0.104 3.896 16 N -0.600 5.600 17 C 0.506 3.494 18 O -0.541 6.541 19 C 0.121 3.879 20 N -0.732 5.732 21 C 0.726 3.274 22 O -0.592 6.592 23 N -0.637 5.637 24 C 0.126 3.874 25 C -0.133 4.133 26 C -0.131 4.131 27 C 0.095 3.905 28 C 0.098 3.902 29 H 0.028 0.972 30 H 0.045 0.955 31 H -0.001 1.001 32 H 0.253 0.747 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.408 0.592 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.478 -20.724 6.147 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.385 4.385 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.019 4.019 16 N -0.333 5.333 17 C 0.292 3.708 18 O -0.419 6.419 19 C -0.007 4.007 20 N -0.391 5.391 21 C 0.427 3.573 22 O -0.471 6.471 23 N -0.376 5.376 24 C 0.003 3.997 25 C -0.171 4.171 26 C -0.170 4.170 27 C -0.028 4.028 28 C -0.025 4.025 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.246 0.754 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.081 0.919 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.344 -20.756 6.000 23.540 hybrid contribution 0.238 1.337 0.166 1.368 sum 9.582 -19.419 6.165 22.515 Atomic orbital electron populations 1.20800 0.82513 0.95669 0.99318 1.43947 1.01892 1.00007 1.85472 1.19233 0.97886 0.85119 1.36246 0.91342 1.25034 0.97800 0.98565 0.98211 1.70071 1.18315 1.27094 1.39646 0.86220 0.78791 0.83978 0.77340 1.21501 1.21728 1.20500 1.20631 0.96515 0.86225 0.90723 0.91714 1.22095 0.99701 0.94962 1.00602 1.21831 1.01161 0.97296 0.96755 1.21742 1.01786 0.93580 0.84834 1.48243 1.48334 1.19425 1.17289 1.20405 0.79286 0.87831 0.83262 1.90692 1.61775 1.58206 1.31199 1.20952 0.96102 0.95172 0.88444 1.44797 1.52686 1.19332 1.22235 1.15255 0.78392 0.82203 0.81409 1.90922 1.68364 1.46653 1.41125 1.47513 1.52042 1.20251 1.17834 1.21749 0.94550 0.86921 0.96453 1.22736 0.99366 1.00139 0.94812 1.22823 1.00251 0.97089 0.96797 1.22357 1.01957 0.92924 0.85564 1.22614 0.96790 0.80590 1.02536 0.95324 0.93673 0.98229 0.93704 0.92168 0.91599 0.90967 0.91657 0.90086 0.91060 0.88564 0.88683 0.75396 0.91535 0.91541 0.89801 0.90413 0.89628 0.90415 0.91149 0.90544 0.91863 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.91 59.85 0.47 4.34 16 2 N -0.59 -14.45 2.82 -173.34 -0.49 -14.94 16 3 C -0.26 -6.96 9.60 -15.06 -0.14 -7.10 16 4 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 5 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 6 N -0.91 -26.30 10.63 55.49 0.59 -25.71 16 7 Si 0.91 21.92 29.57 -169.99 -5.03 16.90 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 C 0.17 3.34 2.74 -67.81 -0.19 3.16 16 12 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 13 C -0.13 -2.13 5.13 -26.69 -0.14 -2.27 16 14 C -0.13 -1.58 6.06 -26.84 -0.16 -1.74 16 15 C 0.10 1.17 6.31 -3.94 -0.02 1.15 16 16 N -0.60 -8.95 2.98 -173.03 -0.52 -9.46 16 17 C 0.51 7.68 7.77 -10.99 -0.09 7.60 16 18 O -0.54 -10.09 15.08 5.56 0.08 -10.00 16 19 C 0.12 1.49 4.50 -5.19 -0.02 1.47 16 20 N -0.73 -9.28 5.49 -66.42 -0.36 -9.65 16 21 C 0.73 9.76 8.49 -86.92 -0.74 9.02 16 22 O -0.59 -9.75 16.67 5.29 0.09 -9.67 16 23 N -0.64 -6.65 3.33 -176.22 -0.59 -7.24 16 24 C 0.13 1.05 6.86 -3.06 -0.02 1.03 16 25 C -0.13 -0.68 6.98 -24.68 -0.17 -0.85 16 26 C -0.13 -0.70 7.10 -24.36 -0.17 -0.87 16 27 C 0.10 0.73 6.58 -2.52 -0.02 0.71 16 28 C 0.10 1.84 5.79 -3.71 -0.02 1.81 16 29 H 0.03 0.75 7.41 -51.93 -0.39 0.36 16 30 H 0.04 1.17 7.20 -51.93 -0.37 0.80 16 31 H 0.00 -0.02 6.45 -51.93 -0.34 -0.35 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.06 0.95 6.71 -51.93 -0.35 0.61 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.72 5.93 -51.93 -0.31 0.42 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.11 7.68 -51.93 -0.40 0.71 16 40 H 0.10 1.06 7.95 -51.93 -0.41 0.65 16 41 H 0.41 5.09 5.91 -40.82 -0.24 4.85 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.59 7.29 -51.93 -0.38 0.21 16 50 H 0.06 1.19 7.52 -51.93 -0.39 0.80 16 51 H 0.09 2.04 7.00 -51.93 -0.36 1.68 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -33.82 395.43 -10.32 -44.14 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.54 Total: 2.24 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: -1.52 Total: 17.43 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -1.36 Total: -66.99 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.17 Total: -19.67 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.82 -10.32 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480725258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.990 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds