Wall clock time and date at job start Tue Mar 31 2020 20:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00042 * 2 1 4 4 H 1.08001 * 120.00523 * 202.06837 * 3 2 1 5 5 C 1.38819 * 119.99901 * 22.07461 * 3 2 1 6 6 N 1.31617 * 119.99823 * 12.39590 * 5 3 2 7 7 Si 1.86796 * 120.00135 * 192.39757 * 5 3 2 8 8 H 1.48502 * 109.47016 * 89.99686 * 7 5 3 9 9 H 1.48496 * 109.47249 * 209.99984 * 7 5 3 10 10 H 1.48499 * 109.47231 * 330.00052 * 7 5 3 11 11 C 1.46498 * 119.99889 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.49839 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.52763 * 59.85409 * 11 2 1 14 14 C 1.53036 * 109.53585 * 178.66944 * 13 11 2 15 15 C 1.52755 * 109.38706 * 61.23833 * 14 13 11 16 16 N 1.46926 * 109.00918 * 305.58269 * 15 14 13 17 17 C 1.34771 * 120.63506 * 233.58638 * 16 15 14 18 18 O 1.21276 * 120.00142 * 179.72021 * 17 16 15 19 19 C 1.50705 * 119.99941 * 359.72357 * 17 16 15 20 20 N 1.46498 * 109.47216 * 180.02562 * 19 17 16 21 21 C 1.34778 * 119.99744 * 179.97438 * 20 19 17 22 22 O 1.21583 * 120.00151 * 359.97438 * 21 20 19 23 23 N 1.34776 * 119.99403 * 179.97438 * 21 20 19 24 24 C 1.47026 * 125.64485 * 180.02562 * 23 21 20 25 25 C 1.54327 * 107.40164 * 180.94780 * 24 23 21 26 26 C 1.55547 * 102.76288 * 22.23496 * 25 24 23 27 27 C 1.47430 * 125.65426 * 359.95852 * 23 21 20 28 28 C 1.46929 * 118.73327 * 53.31250 * 16 15 14 29 29 H 1.09002 * 109.46440 * 274.29974 * 1 2 3 30 30 H 1.08997 * 109.47511 * 34.30229 * 1 2 3 31 31 H 1.08998 * 109.46837 * 154.30529 * 1 2 3 32 32 H 0.96999 * 119.99638 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.45262 * 298.68592 * 13 11 2 34 34 H 1.08990 * 109.45865 * 58.64300 * 13 11 2 35 35 H 1.09004 * 109.49082 * 181.31721 * 14 13 11 36 36 H 1.08998 * 109.49711 * 301.40543 * 14 13 11 37 37 H 1.09001 * 109.50872 * 185.70515 * 15 14 13 38 38 H 1.09002 * 109.43349 * 65.42206 * 15 14 13 39 39 H 1.08993 * 109.47328 * 59.99630 * 19 17 16 40 40 H 1.09002 * 109.46393 * 299.99964 * 19 17 16 41 41 H 0.97001 * 119.99841 * 359.97438 * 20 19 17 42 42 H 1.09002 * 109.88102 * 300.43902 * 24 23 21 43 43 H 1.08995 * 109.88321 * 61.44901 * 24 23 21 44 44 H 1.08998 * 110.71855 * 140.63127 * 25 24 23 45 45 H 1.08995 * 110.71883 * 263.90541 * 25 24 23 46 46 H 1.08996 * 110.96906 * 206.40307 * 26 25 24 47 47 H 1.09004 * 111.05868 * 82.57506 * 26 25 24 48 48 H 1.09002 * 110.36482 * 274.74810 * 27 23 21 49 49 H 1.09004 * 110.36170 * 36.95936 * 27 23 21 50 50 H 1.08997 * 109.59014 * 66.42850 * 28 16 15 51 51 H 1.08999 * 109.58290 * 186.71484 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2202 -0.3514 5 6 1.5319 2.3440 0.4518 6 7 0.3899 2.2700 1.1019 7 14 2.3213 4.0075 0.1371 8 1 1.8347 4.5494 -1.1571 9 1 1.9595 4.9423 1.2326 10 1 3.7974 3.8531 0.0854 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0701 -0.0009 13 6 1.8259 -2.0734 -1.2482 14 6 2.6158 -3.3840 -1.2659 15 6 2.2555 -4.2099 -0.0325 16 7 2.4689 -3.3927 1.1697 17 6 3.2425 -3.8426 2.1775 18 8 3.4150 -3.1563 3.1624 19 6 3.8932 -5.1984 2.0805 20 7 4.6747 -5.4530 3.2932 21 6 5.3481 -6.6124 3.4298 22 8 5.3067 -7.4472 2.5469 23 7 6.0674 -6.8463 4.5453 24 6 6.8464 -8.0619 4.8233 25 6 7.4790 -7.8951 6.2211 26 6 6.5578 -6.8358 6.8910 27 6 6.2047 -5.9252 5.6883 28 6 1.8279 -2.0730 1.2498 29 1 -0.3632 0.0771 1.0248 30 1 -0.3634 0.8489 -0.5791 31 1 -0.3633 -0.9260 -0.4456 32 1 -0.0419 3.0793 1.4173 33 1 0.7583 -2.2929 -1.2340 34 1 2.0652 -1.4930 -2.1392 35 1 2.3681 -3.9458 -2.1666 36 1 3.6836 -3.1654 -1.2552 37 1 2.8894 -5.0956 0.0105 38 1 1.2090 -4.5095 -0.0896 39 1 4.5510 -5.2244 1.2118 40 1 3.1241 -5.9638 1.9769 41 1 4.7074 -4.7871 3.9978 42 1 6.1906 -8.9325 4.8148 43 1 7.6290 -8.1802 4.0739 44 1 7.4521 -8.8356 6.7712 45 1 8.5004 -7.5234 6.1402 46 1 7.0969 -6.2789 7.6573 47 1 5.6632 -7.3006 7.3053 48 1 7.0068 -5.2103 5.5050 49 1 5.2654 -5.4025 5.8690 50 1 0.7459 -2.1948 1.2992 51 1 2.1779 -1.5502 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480725258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:40 Heat of formation + Delta-G solvation = -52.879801 kcal Electronic energy + Delta-G solvation = -30094.609579 eV Core-core repulsion = 26028.958510 eV Total energy + Delta-G solvation = -4065.651069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.69564 -40.97915 -39.08739 -38.42485 -36.82990 -35.60988 -34.04777 -32.85813 -32.63128 -30.84255 -29.98472 -28.65662 -28.05310 -26.09815 -25.23874 -24.27728 -23.07728 -22.07842 -21.24951 -21.11242 -20.08331 -19.34691 -18.75167 -18.01606 -17.63639 -17.30404 -17.00293 -16.77554 -16.56196 -15.81660 -15.77187 -15.31928 -15.28010 -15.20883 -14.58280 -14.40792 -14.39256 -14.33991 -14.17662 -13.93537 -13.80774 -13.58196 -13.48608 -13.16230 -12.93115 -12.83175 -12.48804 -12.21765 -12.20459 -12.16606 -12.14117 -12.07658 -11.76409 -11.66488 -11.61035 -11.45835 -11.39094 -11.00532 -10.65727 -10.41819 -9.76498 -9.57982 -8.78638 -7.84906 -5.33019 1.33258 1.42269 1.44665 1.45509 1.54132 1.97398 2.00623 2.49225 2.91838 3.28165 3.30538 3.60761 3.65356 3.70554 3.98638 4.06348 4.07083 4.11336 4.23771 4.26806 4.28386 4.30030 4.38217 4.47862 4.59967 4.61602 4.67815 4.79031 4.85407 4.88063 4.91795 4.94354 4.99367 5.03403 5.10448 5.15475 5.21909 5.25131 5.27324 5.35587 5.42763 5.44756 5.56216 5.61687 5.71916 5.91995 6.30267 6.33558 6.80178 6.97826 7.13341 7.39321 7.85092 8.27121 9.17687 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.002325 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.559027 B =12041.559592 C =13150.303398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.609 5.609 3 C -0.263 4.263 4 H 0.067 0.933 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.969 3.031 8 H -0.283 1.283 9 H -0.295 1.295 10 H -0.272 1.272 11 C 0.166 3.834 12 H 0.045 0.955 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.098 3.902 16 N -0.598 5.598 17 C 0.505 3.495 18 O -0.582 6.582 19 C 0.131 3.869 20 N -0.732 5.732 21 C 0.720 3.280 22 O -0.626 6.626 23 N -0.639 5.639 24 C 0.118 3.882 25 C -0.121 4.121 26 C -0.124 4.124 27 C 0.087 3.913 28 C 0.115 3.885 29 H -0.001 1.001 30 H 0.017 0.983 31 H 0.036 0.964 32 H 0.248 0.752 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.408 0.592 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.661 -22.973 5.677 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.331 5.331 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.209 1.209 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.058 3.942 12 H 0.064 0.936 13 C -0.163 4.163 14 C -0.162 4.162 15 C -0.023 4.023 16 N -0.330 5.330 17 C 0.293 3.707 18 O -0.463 6.463 19 C 0.003 3.997 20 N -0.391 5.391 21 C 0.421 3.579 22 O -0.508 6.508 23 N -0.377 5.377 24 C -0.005 4.005 25 C -0.159 4.159 26 C -0.162 4.162 27 C -0.035 4.035 28 C -0.010 4.010 29 H 0.017 0.983 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.246 0.754 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.124 0.876 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.560 -23.056 5.523 25.954 hybrid contribution -0.086 1.973 0.325 2.002 sum 10.475 -21.083 5.848 24.257 Atomic orbital electron populations 1.20499 0.82483 0.96223 0.97312 1.44162 1.02208 1.00993 1.85760 1.19526 0.97930 0.86576 1.35332 0.91542 1.25790 0.98593 1.01847 0.98619 1.70235 1.19661 1.27436 1.41023 0.85236 0.78261 0.79816 0.76949 1.20947 1.22189 1.19642 1.20796 0.94947 0.85241 0.93207 0.93643 1.21936 1.00647 0.96288 0.97431 1.21814 1.00290 0.95364 0.98694 1.22101 1.03874 0.93761 0.82536 1.48230 1.47800 1.18231 1.18755 1.20926 0.78675 0.88575 0.82495 1.90678 1.63105 1.59592 1.32912 1.20957 0.96596 0.93220 0.88889 1.44811 1.52697 1.19231 1.22367 1.15416 0.78669 0.81881 0.81891 1.90885 1.69741 1.47617 1.42567 1.47679 1.51118 1.21337 1.17526 1.21959 0.94169 0.86007 0.98361 1.22733 0.99432 1.01062 0.92667 1.22834 1.00582 0.96722 0.96094 1.22570 1.02038 0.93199 0.85679 1.22030 0.96615 0.82392 0.99941 0.98274 0.96432 0.94538 0.94257 0.91652 0.92516 0.87277 0.91863 0.86761 0.89157 0.87071 0.86791 0.75396 0.92136 0.92197 0.87933 0.89361 0.87597 0.90363 0.90635 0.90967 0.92006 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 7.91 127.77 1.01 9.79 16 2 N -0.61 -30.42 2.82 -702.33 -1.98 -32.40 16 3 C -0.26 -14.71 9.60 84.04 0.81 -13.91 16 4 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 5 C -0.05 -3.04 5.11 84.86 0.43 -2.61 16 6 N -0.94 -56.26 10.63 21.65 0.23 -56.03 16 7 Si 0.97 45.99 29.57 68.60 2.03 48.02 16 8 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 C 0.17 6.62 2.74 45.07 0.12 6.75 16 12 H 0.05 1.96 7.86 -2.38 -0.02 1.94 16 13 C -0.12 -3.70 5.13 30.62 0.16 -3.54 16 14 C -0.12 -2.50 6.06 30.53 0.19 -2.32 16 15 C 0.10 1.86 6.31 86.22 0.54 2.41 16 16 N -0.60 -17.10 2.98 -819.74 -2.44 -19.54 16 17 C 0.50 14.99 7.77 87.66 0.68 15.68 16 18 O -0.58 -22.22 15.08 -3.02 -0.05 -22.27 16 19 C 0.13 2.98 4.50 85.64 0.39 3.37 16 20 N -0.73 -18.01 5.49 -482.30 -2.65 -20.65 16 21 C 0.72 18.83 8.49 179.05 1.52 20.35 16 22 O -0.63 -20.11 16.67 -3.98 -0.07 -20.18 16 23 N -0.64 -12.79 3.33 -829.69 -2.76 -15.55 16 24 C 0.12 1.83 6.86 86.73 0.59 2.42 16 25 C -0.12 -0.95 6.98 31.92 0.22 -0.73 16 26 C -0.12 -1.04 7.10 32.13 0.23 -0.82 16 27 C 0.09 1.24 6.58 86.86 0.57 1.81 16 28 C 0.12 4.37 5.79 86.36 0.50 4.87 16 29 H 0.00 -0.06 7.41 -2.39 -0.02 -0.08 16 30 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 31 H 0.04 1.48 6.45 -2.39 -0.02 1.46 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.06 1.90 6.71 -2.39 -0.02 1.88 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.50 5.93 -2.39 -0.01 1.48 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 2.25 7.68 -2.39 -0.02 2.24 16 40 H 0.11 2.22 7.95 -2.39 -0.02 2.20 16 41 H 0.41 10.14 5.91 -92.71 -0.55 9.59 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.07 1.08 7.29 -2.39 -0.02 1.06 16 50 H 0.06 2.35 7.52 -2.39 -0.02 2.33 16 51 H 0.05 2.27 7.00 -2.39 -0.02 2.26 16 Total: -1.00 -77.41 395.43 0.66 -76.75 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.38 Total: 18.33 kcal Atomic # 6 Polarization: 35.55 SS G_CDS: 7.97 Total: 43.51 kcal Atomic # 7 Polarization: -134.58 SS G_CDS: -9.60 Total: -144.17 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -0.11 Total: -42.44 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.41 0.66 -76.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480725258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.868 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds