Wall clock time and date at job start Tue Mar 31 2020 21:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47702 * 2 1 4 4 C 1.53005 * 109.46970 * 239.99446 * 2 1 3 5 5 C 1.52992 * 109.47277 * 175.00268 * 4 2 1 6 6 N 1.46499 * 109.47267 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 4 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 5 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 11 11 C 1.52994 * 109.47448 * 299.99856 * 9 7 6 12 12 N 1.46506 * 109.46874 * 180.02562 * 9 7 6 13 13 N 1.29015 * 126.44081 * 59.68907 * 12 9 7 14 14 N 1.28733 * 108.80982 * 179.83652 * 13 12 9 15 15 N 1.28843 * 109.39960 * 0.43865 * 14 13 12 16 16 C 1.31072 * 107.98493 * 359.73268 * 15 14 13 17 17 C 1.50708 * 126.65869 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47241 * 240.04520 * 17 16 15 19 19 C 1.53004 * 109.46689 * 0.04645 * 17 16 15 20 20 C 1.52991 * 109.47108 * 120.04275 * 17 16 15 21 21 N 1.46502 * 109.46993 * 120.00241 * 2 1 3 22 22 C 1.36944 * 119.99312 * 274.99495 * 21 2 1 23 23 H 1.08000 * 120.00222 * 0.02562 * 22 21 2 24 24 C 1.38818 * 119.99529 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99873 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99884 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46748 * 60.00328 * 26 24 22 28 28 H 1.48493 * 109.47116 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47064 * 300.00423 * 26 24 22 30 30 H 1.09005 * 109.46801 * 300.00645 * 1 2 3 31 31 H 1.09002 * 109.46895 * 59.99544 * 1 2 3 32 32 H 1.08989 * 109.47700 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46840 * 55.00091 * 4 2 1 34 34 H 1.09005 * 109.47310 * 295.00481 * 4 2 1 35 35 H 1.09004 * 109.47330 * 60.00123 * 5 4 2 36 36 H 1.09005 * 109.47124 * 300.00327 * 5 4 2 37 37 H 0.96999 * 119.99984 * 359.97438 * 6 5 4 38 38 H 1.09005 * 109.47504 * 180.02562 * 11 9 7 39 39 H 1.08997 * 109.47563 * 300.00368 * 11 9 7 40 40 H 1.09008 * 109.47290 * 60.00053 * 11 9 7 41 41 H 1.09005 * 109.46788 * 59.99889 * 18 17 16 42 42 H 1.08997 * 109.47317 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.46987 * 299.99929 * 18 17 16 44 44 H 1.08997 * 109.47556 * 59.99951 * 19 17 16 45 45 H 1.09007 * 109.46532 * 180.02562 * 19 17 16 46 46 H 1.09003 * 109.47150 * 299.99329 * 19 17 16 47 47 H 1.08998 * 109.47576 * 60.00117 * 20 17 16 48 48 H 1.09002 * 109.47210 * 180.02562 * 20 17 16 49 49 H 1.09002 * 109.47578 * 299.99850 * 20 17 16 50 50 H 0.97000 * 120.00671 * 94.99713 * 21 2 1 51 51 H 0.96997 * 119.99907 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 7 4.0530 -1.3038 -2.5101 7 6 5.3740 -1.3400 -2.7754 8 8 6.1580 -0.7970 -2.0262 9 6 5.8762 -2.0505 -4.0058 10 1 5.4419 -1.5907 -4.8936 11 6 5.4709 -3.5245 -3.9447 12 7 7.3364 -1.9481 -4.0669 13 7 8.1725 -2.3799 -3.1843 14 7 9.3683 -2.1149 -3.5808 15 7 9.3179 -1.5038 -4.7139 16 6 8.0574 -1.3808 -5.0517 17 6 7.5199 -0.7298 -6.3001 18 6 6.6135 0.4411 -5.9150 19 6 8.6844 -0.2156 -7.1490 20 6 6.7162 -1.7540 -7.1038 21 7 2.0183 -0.6907 1.1962 22 6 2.1492 -0.0074 2.3757 23 1 1.8920 1.0404 2.4243 24 6 2.6113 -0.6619 3.5093 25 7 2.9243 -1.9390 3.4502 26 14 2.7905 0.2702 5.1182 27 1 1.4685 0.8080 5.5284 28 1 3.2993 -0.6482 6.1683 29 1 3.7466 1.3919 4.9366 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 0.0005 33 1 1.6053 -0.2619 -2.1370 34 1 1.7516 -1.7717 -1.2055 35 1 3.9994 -1.0730 -0.4260 36 1 3.8532 0.4367 -1.3574 37 1 3.4257 -1.7353 -3.1110 38 1 5.8346 -4.0385 -4.8345 39 1 5.9052 -3.9843 -3.0570 40 1 4.3845 -3.6011 -3.8989 41 1 7.1861 1.1708 -5.3424 42 1 6.2250 0.9122 -6.8179 43 1 5.7839 0.0747 -5.3102 44 1 9.3301 -1.0497 -7.4234 45 1 8.2955 0.2556 -8.0518 46 1 9.2569 0.5141 -6.5765 47 1 5.8867 -2.1204 -6.4991 48 1 6.3278 -1.2833 -8.0069 49 1 7.3620 -2.5882 -7.3782 50 1 2.2490 -1.6318 1.1527 51 1 3.2476 -2.3963 4.2422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480768092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:14 Heat of formation + Delta-G solvation = 79.588592 kcal Electronic energy + Delta-G solvation = -30412.778025 eV Core-core repulsion = 26385.163967 eV Total energy + Delta-G solvation = -4027.614058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.34856 -40.13072 -37.88086 -36.83003 -35.92583 -34.67892 -32.57971 -32.04682 -31.36588 -29.30915 -28.16905 -27.98944 -27.94340 -25.84114 -24.23765 -24.01498 -23.46707 -22.33681 -20.86986 -20.37945 -19.78489 -18.14427 -17.48246 -17.23067 -16.73128 -16.13021 -15.85485 -15.56148 -14.95269 -14.71809 -14.63194 -14.22754 -14.06686 -13.64320 -13.55552 -13.32604 -13.11740 -13.00320 -12.88362 -12.82630 -12.57435 -12.52045 -12.26681 -12.22504 -12.12237 -11.93316 -11.65781 -11.62564 -11.40908 -11.24437 -11.15406 -11.05959 -10.99046 -10.78344 -10.69584 -10.38034 -10.21038 -10.06094 -9.83239 -9.66545 -9.13082 -8.91622 -6.98743 -5.77171 -3.06435 1.11671 1.61735 2.20015 2.26074 2.85894 3.44878 3.45686 3.49877 3.50582 3.79640 3.95061 4.08839 4.20811 4.27568 4.47820 4.59189 4.68873 4.84969 4.90637 4.99768 5.11307 5.14284 5.15351 5.22283 5.27692 5.27787 5.37299 5.41336 5.48288 5.49960 5.53855 5.59290 5.65874 5.68194 5.77804 5.87847 5.95248 5.97517 6.07951 6.18930 6.27643 6.32509 6.48728 6.60221 6.79156 6.99397 7.24874 7.69341 7.94054 8.40995 8.57698 9.52486 10.07807 10.42055 11.45265 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.002513 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.582720 B =11141.179110 C =11987.760018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.718 5.718 7 C 0.500 3.500 8 O -0.503 6.503 9 C 0.116 3.884 10 H 0.143 0.857 11 C -0.163 4.163 12 N -0.288 5.288 13 N -0.062 5.062 14 N -0.081 5.081 15 N -0.301 5.301 16 C 0.190 3.810 17 C 0.014 3.986 18 C -0.151 4.151 19 C -0.131 4.131 20 C -0.151 4.151 21 N -0.723 5.723 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.383 0.617 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -0.446 -28.325 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C 0.000 4.000 6 N -0.370 5.370 7 C 0.281 3.719 8 O -0.376 6.376 9 C 0.010 3.990 10 H 0.160 0.840 11 C -0.221 4.221 12 N -0.090 5.090 13 N -0.047 5.047 14 N -0.074 5.074 15 N -0.148 5.148 16 C -0.088 4.088 17 C 0.010 3.990 18 C -0.209 4.209 19 C -0.189 4.189 20 C -0.209 4.209 21 N -0.366 5.366 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.217 0.783 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.010 -0.344 -26.703 26.874 hybrid contribution -1.053 0.155 0.385 1.132 sum 1.957 -0.188 -26.317 26.391 Atomic orbital electron populations 1.22428 0.99060 1.00861 1.00018 1.20144 0.91948 0.95563 0.85949 0.93299 1.22072 0.93423 1.01997 0.99572 1.21572 0.94722 0.97193 0.86535 1.45992 1.06030 1.56970 1.27995 1.20025 0.83649 0.81600 0.86576 1.90877 1.54878 1.43853 1.48032 1.21965 0.74733 1.01128 1.01201 0.83992 1.22197 1.03798 0.90718 1.05433 1.48030 1.08729 1.38291 1.13923 1.78994 0.95209 1.17016 1.13456 1.78656 1.11983 1.11971 1.04796 1.74959 1.15181 1.16318 1.08387 1.25999 0.88018 0.99684 0.95089 1.19250 0.97127 0.94936 0.87654 1.22091 0.98807 0.97234 1.02798 1.21748 0.96185 1.02177 0.98808 1.22106 0.99618 0.98759 1.00426 1.42439 1.78143 1.10623 1.05345 1.19154 1.36953 0.93812 0.87327 0.91280 1.24728 1.01972 0.95947 0.98074 1.69633 1.50628 1.08659 1.29063 0.86297 0.77723 0.78713 0.83633 1.21325 1.21697 1.21225 0.92661 0.94582 0.93495 0.91809 0.91425 0.89267 0.91503 0.76826 0.90213 0.89433 0.88634 0.91257 0.90032 0.92668 0.91340 0.91221 0.91318 0.92373 0.90057 0.91359 0.78293 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 2 C 0.17 3.13 2.89 -67.92 -0.20 2.94 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.77 4.87 -26.73 -0.13 -1.90 16 5 C 0.12 1.81 5.56 -4.05 -0.02 1.79 16 6 N -0.72 -7.81 5.45 -60.30 -0.33 -8.14 16 7 C 0.50 6.54 7.18 -10.98 -0.08 6.46 16 8 O -0.50 -9.58 15.88 5.56 0.09 -9.49 16 9 C 0.12 1.06 2.25 -69.08 -0.16 0.90 16 10 H 0.14 0.75 3.74 -51.93 -0.19 0.56 16 11 C -0.16 -1.11 9.31 37.15 0.35 -0.76 16 12 N -0.29 -3.62 2.76 -52.93 -0.15 -3.77 16 13 N -0.06 -1.02 12.41 60.35 0.75 -0.27 16 14 N -0.08 -1.39 13.43 60.35 0.81 -0.58 16 15 N -0.30 -4.46 11.71 32.70 0.38 -4.08 16 16 C 0.19 2.21 6.40 -155.43 -1.00 1.22 16 17 C 0.01 0.10 0.75 -155.66 -0.12 -0.02 16 18 C -0.15 -0.96 8.31 37.16 0.31 -0.65 16 19 C -0.13 -0.84 8.00 37.16 0.30 -0.54 16 20 C -0.15 -0.64 8.31 37.15 0.31 -0.33 16 21 N -0.72 -17.14 4.57 -53.42 -0.24 -17.38 16 22 C -0.24 -6.56 9.93 -15.05 -0.15 -6.71 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 26 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.77 8.14 -51.94 -0.42 0.34 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.74 7.75 -51.93 -0.40 1.34 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.40 2.63 7.89 -40.82 -0.32 2.31 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.37 7.56 -51.92 -0.39 -0.02 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.05 0.34 5.58 -51.93 -0.29 0.05 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.19 5.58 -51.93 -0.29 -0.10 16 48 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 51 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 411.14 15.07 6.20 6.20 Total: -1.00 -37.16 411.14 -5.64 -42.79 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.52 Total: 4.83 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.33 Total: -0.34 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 1.95 Total: -61.57 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.16 -5.64 -42.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480768092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.381 kcal (2) G-P(sol) polarization free energy of solvation -37.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds