Wall clock time and date at job start Tue Mar 31 2020 21:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47702 * 2 1 4 4 C 1.53005 * 109.46970 * 239.99446 * 2 1 3 5 5 C 1.52992 * 109.47277 * 175.00268 * 4 2 1 6 6 N 1.46499 * 109.47267 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 4 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 5 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 11 11 C 1.52994 * 109.47448 * 299.99856 * 9 7 6 12 12 N 1.46506 * 109.46874 * 180.02562 * 9 7 6 13 13 N 1.29015 * 126.44081 * 59.68907 * 12 9 7 14 14 N 1.28733 * 108.80982 * 179.83652 * 13 12 9 15 15 N 1.28843 * 109.39960 * 0.43865 * 14 13 12 16 16 C 1.31072 * 107.98493 * 359.73268 * 15 14 13 17 17 C 1.50708 * 126.65869 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47241 * 240.04520 * 17 16 15 19 19 C 1.53004 * 109.46689 * 0.04645 * 17 16 15 20 20 C 1.52991 * 109.47108 * 120.04275 * 17 16 15 21 21 N 1.46502 * 109.46993 * 120.00241 * 2 1 3 22 22 C 1.36944 * 119.99312 * 274.99495 * 21 2 1 23 23 H 1.08000 * 120.00222 * 0.02562 * 22 21 2 24 24 C 1.38818 * 119.99529 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99873 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99884 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46748 * 60.00328 * 26 24 22 28 28 H 1.48493 * 109.47116 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47064 * 300.00423 * 26 24 22 30 30 H 1.09005 * 109.46801 * 300.00645 * 1 2 3 31 31 H 1.09002 * 109.46895 * 59.99544 * 1 2 3 32 32 H 1.08989 * 109.47700 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46840 * 55.00091 * 4 2 1 34 34 H 1.09005 * 109.47310 * 295.00481 * 4 2 1 35 35 H 1.09004 * 109.47330 * 60.00123 * 5 4 2 36 36 H 1.09005 * 109.47124 * 300.00327 * 5 4 2 37 37 H 0.96999 * 119.99984 * 359.97438 * 6 5 4 38 38 H 1.09005 * 109.47504 * 180.02562 * 11 9 7 39 39 H 1.08997 * 109.47563 * 300.00368 * 11 9 7 40 40 H 1.09008 * 109.47290 * 60.00053 * 11 9 7 41 41 H 1.09005 * 109.46788 * 59.99889 * 18 17 16 42 42 H 1.08997 * 109.47317 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.46987 * 299.99929 * 18 17 16 44 44 H 1.08997 * 109.47556 * 59.99951 * 19 17 16 45 45 H 1.09007 * 109.46532 * 180.02562 * 19 17 16 46 46 H 1.09003 * 109.47150 * 299.99329 * 19 17 16 47 47 H 1.08998 * 109.47576 * 60.00117 * 20 17 16 48 48 H 1.09002 * 109.47210 * 180.02562 * 20 17 16 49 49 H 1.09002 * 109.47578 * 299.99850 * 20 17 16 50 50 H 0.97000 * 120.00671 * 94.99713 * 21 2 1 51 51 H 0.96997 * 119.99907 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 7 4.0530 -1.3038 -2.5101 7 6 5.3740 -1.3400 -2.7754 8 8 6.1580 -0.7970 -2.0262 9 6 5.8762 -2.0505 -4.0058 10 1 5.4419 -1.5907 -4.8936 11 6 5.4709 -3.5245 -3.9447 12 7 7.3364 -1.9481 -4.0669 13 7 8.1725 -2.3799 -3.1843 14 7 9.3683 -2.1149 -3.5808 15 7 9.3179 -1.5038 -4.7139 16 6 8.0574 -1.3808 -5.0517 17 6 7.5199 -0.7298 -6.3001 18 6 6.6135 0.4411 -5.9150 19 6 8.6844 -0.2156 -7.1490 20 6 6.7162 -1.7540 -7.1038 21 7 2.0183 -0.6907 1.1962 22 6 2.1492 -0.0074 2.3757 23 1 1.8920 1.0404 2.4243 24 6 2.6113 -0.6619 3.5093 25 7 2.9243 -1.9390 3.4502 26 14 2.7905 0.2702 5.1182 27 1 1.4685 0.8080 5.5284 28 1 3.2993 -0.6482 6.1683 29 1 3.7466 1.3919 4.9366 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 0.0005 33 1 1.6053 -0.2619 -2.1370 34 1 1.7516 -1.7717 -1.2055 35 1 3.9994 -1.0730 -0.4260 36 1 3.8532 0.4367 -1.3574 37 1 3.4257 -1.7353 -3.1110 38 1 5.8346 -4.0385 -4.8345 39 1 5.9052 -3.9843 -3.0570 40 1 4.3845 -3.6011 -3.8989 41 1 7.1861 1.1708 -5.3424 42 1 6.2250 0.9122 -6.8179 43 1 5.7839 0.0747 -5.3102 44 1 9.3301 -1.0497 -7.4234 45 1 8.2955 0.2556 -8.0518 46 1 9.2569 0.5141 -6.5765 47 1 5.8867 -2.1204 -6.4991 48 1 6.3278 -1.2833 -8.0069 49 1 7.3620 -2.5882 -7.3782 50 1 2.2490 -1.6318 1.1527 51 1 3.2476 -2.3963 4.2422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480768092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:13 Heat of formation + Delta-G solvation = 50.951933 kcal Electronic energy + Delta-G solvation = -30414.019803 eV Core-core repulsion = 26385.163967 eV Total energy + Delta-G solvation = -4028.855836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.37973 -41.21718 -38.54904 -38.19175 -36.91689 -36.04590 -34.25778 -33.17825 -32.35124 -30.93745 -29.52925 -28.51356 -28.31011 -26.63191 -25.89964 -24.99985 -24.85247 -23.48452 -21.96594 -21.28495 -20.97647 -19.38136 -19.01818 -18.38683 -17.71961 -16.99997 -16.90858 -16.77832 -16.39176 -15.80956 -15.49567 -15.34812 -15.20871 -14.95919 -14.72184 -14.34143 -14.15373 -13.93457 -13.79079 -13.57174 -13.55559 -13.26753 -13.25182 -13.05931 -12.95319 -12.81586 -12.73561 -12.70248 -12.63201 -12.34785 -12.32410 -12.25130 -12.17981 -12.14572 -12.04207 -11.79385 -11.65177 -11.60160 -11.21935 -10.98021 -10.89991 -10.27356 -8.98190 -7.94470 -5.20363 0.12183 0.76767 1.11095 1.24061 1.43572 1.46534 1.51754 1.87255 2.55401 2.75381 3.01553 3.31450 3.36642 3.40178 3.44639 3.79652 3.91823 3.93841 3.99287 4.02907 4.20386 4.23924 4.35765 4.42090 4.43580 4.55635 4.62155 4.66962 4.69518 4.77910 4.80090 4.86937 4.88046 4.93222 4.94517 4.98589 5.03149 5.07221 5.09216 5.18741 5.22967 5.30551 5.33169 5.38547 5.41803 5.53289 5.63975 6.29097 6.31228 7.01318 7.35325 7.48565 8.14773 8.34316 9.28756 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.002513 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.582720 B =11141.179110 C =11987.760018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.133 3.867 6 N -0.693 5.693 7 C 0.497 3.503 8 O -0.572 6.572 9 C 0.119 3.881 10 H 0.190 0.810 11 C -0.163 4.163 12 N -0.286 5.286 13 N -0.097 5.097 14 N -0.116 5.116 15 N -0.329 5.329 16 C 0.202 3.798 17 C 0.012 3.988 18 C -0.151 4.151 19 C -0.131 4.131 20 C -0.150 4.150 21 N -0.735 5.735 22 C -0.232 4.232 23 H 0.073 0.927 24 C -0.078 4.078 25 N -0.969 5.969 26 Si 0.963 3.037 27 H -0.275 1.275 28 H -0.299 1.299 29 H -0.284 1.284 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.053 0.947 37 H 0.425 0.575 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.134 0.866 41 H 0.041 0.959 42 H 0.118 0.882 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.046 0.954 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.062 0.938 50 H 0.372 0.628 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 0.128 -32.494 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.009 3.991 6 N -0.346 5.346 7 C 0.280 3.720 8 O -0.450 6.450 9 C 0.014 3.986 10 H 0.207 0.793 11 C -0.221 4.221 12 N -0.088 5.088 13 N -0.083 5.083 14 N -0.110 5.110 15 N -0.177 5.177 16 C -0.076 4.076 17 C 0.009 3.991 18 C -0.209 4.209 19 C -0.189 4.189 20 C -0.207 4.207 21 N -0.376 5.376 22 C -0.364 4.364 23 H 0.091 0.909 24 C -0.270 4.270 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.201 1.201 28 H -0.225 1.225 29 H -0.211 1.211 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.264 0.736 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.152 0.848 41 H 0.060 0.940 42 H 0.136 0.864 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.131 0.869 49 H 0.081 0.919 50 H 0.204 0.796 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.156 0.242 -30.943 30.944 hybrid contribution -0.148 0.078 1.552 1.561 sum -0.304 0.320 -29.390 29.394 Atomic orbital electron populations 1.22261 0.97012 1.01133 1.00878 1.20491 0.93235 0.95177 0.85751 0.94158 1.21929 0.91763 1.02503 0.99052 1.21170 0.95773 0.96102 0.86060 1.45650 1.06021 1.56027 1.26946 1.20756 0.83547 0.80582 0.87077 1.90862 1.56654 1.46865 1.50647 1.22402 0.72966 1.02651 1.00575 0.79308 1.22334 1.06082 0.88538 1.05115 1.48278 1.09659 1.37610 1.13289 1.78896 0.95717 1.18517 1.15144 1.78599 1.12850 1.13413 1.06098 1.74861 1.17468 1.17241 1.08137 1.26984 0.87124 0.97697 0.95754 1.19662 0.97806 0.95849 0.85795 1.22145 0.98208 0.96341 1.04205 1.21779 0.95916 1.01507 0.99684 1.22173 0.99380 0.97851 1.01326 1.42655 1.78401 1.10244 1.06322 1.19543 1.34342 0.94022 0.88528 0.90912 1.25458 1.03436 0.96837 1.01271 1.69782 1.52910 1.10100 1.29232 0.85361 0.77948 0.77321 0.80096 1.20073 1.22531 1.21093 0.95217 0.90295 0.93486 0.86781 0.90428 0.94811 0.92903 0.73633 0.87758 0.92661 0.84818 0.93958 0.86383 0.92338 0.92180 0.87829 0.93524 0.90901 0.86858 0.91860 0.79611 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 9.49 71.98 0.68 -3.90 16 2 C 0.16 5.56 2.89 44.99 0.13 5.69 16 3 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 4 C -0.11 -2.71 4.87 30.59 0.15 -2.56 16 5 C 0.13 3.87 5.56 86.38 0.48 4.35 16 6 N -0.69 -13.57 5.45 -463.07 -2.52 -16.09 16 7 C 0.50 12.64 7.18 87.65 0.63 13.27 16 8 O -0.57 -22.82 15.88 -3.01 -0.05 -22.87 16 9 C 0.12 1.90 2.25 44.24 0.10 2.00 16 10 H 0.19 1.12 3.74 -2.39 -0.01 1.11 16 11 C -0.16 -1.74 9.31 71.98 0.67 -1.07 16 12 N -0.29 -7.15 2.76 -321.36 -0.89 -8.04 16 13 N -0.10 -3.38 12.41 37.02 0.46 -2.93 16 14 N -0.12 -4.28 13.43 37.01 0.50 -3.78 16 15 N -0.33 -10.21 11.71 -50.45 -0.59 -10.80 16 16 C 0.20 4.63 6.40 138.14 0.88 5.52 16 17 C 0.01 0.14 0.75 -52.93 -0.04 0.10 16 18 C -0.15 -1.44 8.31 71.98 0.60 -0.84 16 19 C -0.13 -1.44 8.00 71.98 0.58 -0.87 16 20 C -0.15 -0.58 8.31 71.98 0.60 0.02 16 21 N -0.74 -35.21 4.57 -322.92 -1.48 -36.68 16 22 C -0.23 -12.79 9.93 84.03 0.83 -11.96 16 23 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 26 Si 0.96 47.55 29.55 68.60 2.03 49.57 16 27 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 28 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 29 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 30 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.03 1.38 7.75 -2.38 -0.02 1.36 16 36 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.42 3.65 7.89 -92.71 -0.73 2.91 16 38 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.13 0.38 7.56 -2.38 -0.02 0.36 16 41 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.06 0.50 5.58 -2.39 -0.01 0.49 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 45 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 46 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.06 5.58 -2.39 -0.01 0.04 16 48 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 49 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.37 19.29 7.80 -92.71 -0.72 18.57 16 51 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -91.40 411.14 3.99 -87.41 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -0.51 Total: 18.66 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 6.76 Total: 5.67 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -4.24 Total: -138.44 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -91.40 3.99 -87.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480768092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.360 kcal (2) G-P(sol) polarization free energy of solvation -91.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds