Wall clock time and date at job start Tue Mar 31 2020 21:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47423 * 2 1 4 4 C 1.53006 * 109.47184 * 119.99582 * 2 1 3 5 5 C 1.52999 * 109.46997 * 185.00136 * 4 2 1 6 6 N 1.46506 * 109.46684 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99873 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99754 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00137 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.46978 * 59.99653 * 9 7 6 11 11 C 1.52997 * 109.46910 * 299.99848 * 9 7 6 12 12 N 1.46500 * 109.47324 * 179.97438 * 9 7 6 13 13 N 1.29013 * 126.43666 * 59.68853 * 12 9 7 14 14 N 1.28741 * 108.80883 * 179.83156 * 13 12 9 15 15 N 1.28839 * 109.39374 * 0.44233 * 14 13 12 16 16 C 1.31068 * 107.99468 * 359.73269 * 15 14 13 17 17 C 1.50696 * 126.66428 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47117 * 240.03731 * 17 16 15 19 19 C 1.53005 * 109.46815 * 0.03945 * 17 16 15 20 20 C 1.53006 * 109.47285 * 120.03757 * 17 16 15 21 21 N 1.46500 * 109.47548 * 239.99557 * 2 1 3 22 22 C 1.36939 * 119.99631 * 84.99662 * 21 2 1 23 23 H 1.08000 * 120.00486 * 0.02562 * 22 21 2 24 24 C 1.38815 * 119.99623 * 180.02562 * 22 21 2 25 25 N 1.31625 * 120.00192 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99819 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47382 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47213 * 119.99952 * 26 24 22 29 29 H 1.48506 * 109.46867 * 239.99842 * 26 24 22 30 30 H 1.09005 * 109.46713 * 300.00691 * 1 2 3 31 31 H 1.09002 * 109.46911 * 60.00306 * 1 2 3 32 32 H 1.08992 * 109.47188 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46866 * 64.99924 * 4 2 1 34 34 H 1.09001 * 109.46611 * 305.00041 * 4 2 1 35 35 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 36 36 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 37 37 H 0.96995 * 120.00050 * 359.72237 * 6 5 4 38 38 H 1.08998 * 109.47624 * 60.00174 * 11 9 7 39 39 H 1.09002 * 109.47045 * 179.97438 * 11 9 7 40 40 H 1.09000 * 109.47140 * 299.99705 * 11 9 7 41 41 H 1.09004 * 109.46772 * 59.99944 * 18 17 16 42 42 H 1.08998 * 109.46750 * 179.97438 * 18 17 16 43 43 H 1.08995 * 109.47160 * 299.99628 * 18 17 16 44 44 H 1.08992 * 109.47537 * 60.00198 * 19 17 16 45 45 H 1.09008 * 109.46824 * 180.02562 * 19 17 16 46 46 H 1.09001 * 109.46598 * 299.99759 * 19 17 16 47 47 H 1.09000 * 109.46931 * 60.00301 * 20 17 16 48 48 H 1.08995 * 109.46832 * 180.02562 * 20 17 16 49 49 H 1.09000 * 109.46680 * 300.00233 * 20 17 16 50 50 H 0.97001 * 120.00257 * 265.00388 * 21 2 1 51 51 H 0.96994 * 119.99967 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0532 -1.3043 2.5097 7 6 5.3740 -1.3397 2.7754 8 8 6.1583 -0.7998 2.0241 9 6 5.8764 -2.0500 4.0058 10 1 5.5883 -3.1003 3.9620 11 6 5.2659 -1.4053 5.2518 12 7 7.3364 -1.9467 4.0675 13 7 8.0259 -0.8577 4.1228 14 7 9.2764 -1.1600 4.1694 15 7 9.4083 -2.4412 4.1356 16 6 8.2108 -2.9700 4.0713 17 6 7.8775 -4.4385 4.0126 18 6 7.1126 -4.7366 2.7215 19 6 9.1704 -5.2563 4.0399 20 6 7.0113 -4.8135 5.2168 21 7 2.0184 -0.6907 -1.1961 22 6 2.1492 -0.0076 -2.3757 23 1 1.8926 1.0404 -2.4242 24 6 2.6115 -0.6622 -3.5092 25 7 2.9246 -1.9392 -3.4500 26 14 2.7905 0.2698 -5.1182 27 1 2.3765 1.6822 -4.9209 28 1 4.2074 0.2260 -5.5605 29 1 1.9294 -0.3582 -6.1523 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7714 1.2057 34 1 1.6054 -0.2615 2.1370 35 1 3.8532 0.4371 1.3574 36 1 3.9995 -1.0728 0.4261 37 1 3.4256 -1.7325 3.1126 38 1 4.1796 -1.4825 5.2058 39 1 5.6289 -1.9193 6.1418 40 1 5.5540 -0.3549 5.2956 41 1 7.7298 -4.4694 1.8637 42 1 6.8720 -5.7988 2.6789 43 1 6.1916 -4.1540 2.7021 44 1 9.7153 -5.0440 4.9597 45 1 8.9294 -6.3185 3.9970 46 1 9.7874 -4.9891 3.1820 47 1 6.0903 -4.2309 5.1973 48 1 6.7707 -5.8757 5.1745 49 1 7.5563 -4.6011 6.1365 50 1 2.2491 -1.6319 -1.1525 51 1 3.2473 -2.3967 -4.2421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480768094.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:16 Heat of formation + Delta-G solvation = 50.898099 kcal Electronic energy + Delta-G solvation = -30487.084109 eV Core-core repulsion = 26458.225938 eV Total energy + Delta-G solvation = -4028.858171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.37900 -41.21643 -38.55962 -38.19891 -36.91772 -36.04817 -34.25896 -33.17519 -32.35005 -30.93800 -29.53028 -28.53652 -28.32892 -26.62012 -25.90390 -25.01037 -24.84801 -23.48358 -21.97044 -21.29731 -20.97638 -19.39017 -19.02038 -18.37997 -17.71518 -17.12877 -16.80520 -16.70269 -16.45809 -15.86082 -15.44283 -15.35362 -15.23569 -14.95925 -14.72833 -14.34995 -14.19287 -13.90348 -13.80358 -13.57532 -13.55318 -13.29386 -13.25230 -13.05892 -12.95557 -12.88206 -12.74219 -12.72159 -12.63930 -12.33578 -12.28806 -12.24320 -12.19535 -12.11662 -12.05440 -11.80567 -11.64773 -11.60816 -11.21937 -10.99335 -10.90869 -10.27569 -8.98123 -7.95076 -5.20553 0.11207 0.76728 1.10740 1.24944 1.43264 1.45310 1.53395 1.86143 2.54995 2.74433 3.01372 3.32420 3.37549 3.39956 3.44145 3.77275 3.91320 3.92216 3.99253 4.01483 4.20236 4.24682 4.34613 4.43559 4.45923 4.52942 4.61476 4.66462 4.67417 4.77729 4.79049 4.85181 4.87226 4.91624 4.93562 4.99302 5.02901 5.05667 5.08783 5.18631 5.20874 5.28882 5.32705 5.36672 5.41437 5.53805 5.63426 6.29102 6.31112 7.01210 7.35509 7.48117 8.14051 8.34496 9.28442 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.002651 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.700262 B =10558.598367 C =11267.722563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.038 0.962 4 C -0.114 4.114 5 C 0.133 3.867 6 N -0.693 5.693 7 C 0.497 3.503 8 O -0.573 6.573 9 C 0.116 3.884 10 H 0.183 0.817 11 C -0.159 4.159 12 N -0.286 5.286 13 N -0.092 5.092 14 N -0.116 5.116 15 N -0.328 5.328 16 C 0.202 3.798 17 C 0.013 3.987 18 C -0.153 4.153 19 C -0.131 4.131 20 C -0.148 4.148 21 N -0.735 5.735 22 C -0.230 4.230 23 H 0.072 0.928 24 C -0.076 4.076 25 N -0.967 5.967 26 Si 0.961 3.039 27 H -0.267 1.267 28 H -0.301 1.301 29 H -0.292 1.292 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.425 0.575 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.115 0.885 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.044 0.956 47 H 0.073 0.927 48 H 0.110 0.890 49 H 0.066 0.934 50 H 0.373 0.627 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 -10.215 26.234 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.057 0.943 4 C -0.152 4.152 5 C 0.009 3.991 6 N -0.346 5.346 7 C 0.281 3.719 8 O -0.451 6.451 9 C 0.011 3.989 10 H 0.199 0.801 11 C -0.217 4.217 12 N -0.088 5.088 13 N -0.078 5.078 14 N -0.109 5.109 15 N -0.176 5.176 16 C -0.076 4.076 17 C 0.009 3.991 18 C -0.211 4.211 19 C -0.189 4.189 20 C -0.206 4.206 21 N -0.376 5.376 22 C -0.362 4.362 23 H 0.090 0.910 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.791 3.209 27 H -0.192 1.192 28 H -0.229 1.229 29 H -0.219 1.219 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.264 0.736 38 H 0.153 0.847 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.133 0.867 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.120 0.880 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.129 0.871 49 H 0.085 0.915 50 H 0.205 0.795 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.715 -8.521 25.656 27.044 hybrid contribution -0.152 -0.117 -1.729 1.740 sum 0.563 -8.638 23.927 25.445 Atomic orbital electron populations 1.22258 0.96990 1.01202 1.00835 1.20484 0.93248 0.95135 0.85802 0.94341 1.21925 0.91757 1.02596 0.98958 1.21170 0.95783 0.96043 0.86097 1.45647 1.06017 1.56121 1.26859 1.20755 0.83595 0.80908 0.86682 1.90865 1.56737 1.46828 1.50642 1.22415 0.72843 1.06363 0.97236 0.80057 1.22328 1.04370 1.01813 0.93190 1.48264 1.09992 1.03750 1.46794 1.78822 1.00062 1.11742 1.17161 1.78578 1.08408 1.06963 1.16944 1.74863 1.21161 1.01280 1.20343 1.26892 0.84602 0.96504 0.99649 1.19624 0.99659 0.80523 0.99266 1.22148 0.99071 1.05298 0.94563 1.21776 0.94029 1.00462 1.02610 1.22163 0.98545 1.05191 0.94690 1.42649 1.78365 1.10278 1.06268 1.19601 1.34102 0.93984 0.88520 0.91036 1.25418 1.03456 0.96856 1.01117 1.69787 1.53055 1.09995 1.29045 0.85247 0.76494 0.78411 0.80742 1.19178 1.22879 1.21922 0.90451 0.95189 0.93326 0.90157 0.87036 0.93244 0.94480 0.73630 0.84656 0.87934 0.91913 0.94300 0.86666 0.92551 0.91785 0.88044 0.93669 0.90863 0.87135 0.91455 0.79495 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 9.49 71.98 0.68 -3.90 16 2 C 0.16 5.56 2.89 44.99 0.13 5.69 16 3 H 0.04 1.41 8.08 -2.38 -0.02 1.39 16 4 C -0.11 -2.71 4.87 30.60 0.15 -2.56 16 5 C 0.13 3.87 5.56 86.38 0.48 4.35 16 6 N -0.69 -13.56 5.45 -463.05 -2.52 -16.09 16 7 C 0.50 12.64 7.18 87.66 0.63 13.27 16 8 O -0.57 -22.84 15.87 -3.04 -0.05 -22.88 16 9 C 0.12 1.85 2.25 44.24 0.10 1.95 16 10 H 0.18 1.41 3.73 -2.39 -0.01 1.40 16 11 C -0.16 -1.32 9.31 71.98 0.67 -0.65 16 12 N -0.29 -7.13 2.76 -321.38 -0.89 -8.01 16 13 N -0.09 -3.08 12.41 37.02 0.46 -2.62 16 14 N -0.12 -4.17 13.43 37.01 0.50 -3.67 16 15 N -0.33 -10.33 11.71 -50.45 -0.59 -10.92 16 16 C 0.20 4.83 6.40 138.13 0.88 5.71 16 17 C 0.01 0.18 0.75 -52.93 -0.04 0.14 16 18 C -0.15 -2.14 8.31 71.98 0.60 -1.54 16 19 C -0.13 -1.73 8.00 71.98 0.58 -1.15 16 20 C -0.15 -0.81 8.31 71.98 0.60 -0.21 16 21 N -0.73 -34.74 4.57 -322.92 -1.48 -36.22 16 22 C -0.23 -12.56 9.93 84.03 0.83 -11.72 16 23 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 24 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 25 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 26 Si 0.96 47.10 29.55 68.60 2.03 49.12 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 28 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 29 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 30 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.48 7.75 -2.39 -0.02 1.46 16 37 H 0.42 3.64 7.88 -92.71 -0.73 2.91 16 38 H 0.14 0.02 7.56 -2.39 -0.02 0.00 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.76 5.58 -2.39 -0.01 0.74 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 45 H 0.10 0.69 8.14 -2.38 -0.02 0.68 16 46 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.16 5.58 -2.39 -0.01 0.15 16 48 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.37 18.94 7.80 -92.71 -0.72 18.21 16 51 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -89.23 411.12 3.99 -85.24 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.51 Total: 19.46 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.76 Total: 5.43 kcal Atomic # 7 Polarization: -132.14 SS G_CDS: -4.24 Total: -136.38 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -89.23 3.99 -85.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480768094.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.140 kcal (2) G-P(sol) polarization free energy of solvation -89.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds