Wall clock time and date at job start Tue Mar 31 2020 21:34:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 109.47423 * 2 1
4 4 C 1.53006 * 109.47184 * 119.99582 * 2 1 3
5 5 C 1.52999 * 109.46997 * 185.00136 * 4 2 1
6 6 N 1.46506 * 109.46684 * 180.02562 * 5 4 2
7 7 C 1.34777 * 119.99873 * 180.02562 * 6 5 4
8 8 O 1.21284 * 119.99754 * 359.97438 * 7 6 5
9 9 C 1.50696 * 120.00137 * 179.97438 * 7 6 5
10 10 H 1.09000 * 109.46978 * 59.99653 * 9 7 6
11 11 C 1.52997 * 109.46910 * 299.99848 * 9 7 6
12 12 N 1.46500 * 109.47324 * 179.97438 * 9 7 6
13 13 N 1.29013 * 126.43666 * 59.68853 * 12 9 7
14 14 N 1.28741 * 108.80883 * 179.83156 * 13 12 9
15 15 N 1.28839 * 109.39374 * 0.44233 * 14 13 12
16 16 C 1.31068 * 107.99468 * 359.73269 * 15 14 13
17 17 C 1.50696 * 126.66428 * 179.97438 * 16 15 14
18 18 C 1.53000 * 109.47117 * 240.03731 * 17 16 15
19 19 C 1.53005 * 109.46815 * 0.03945 * 17 16 15
20 20 C 1.53006 * 109.47285 * 120.03757 * 17 16 15
21 21 N 1.46500 * 109.47548 * 239.99557 * 2 1 3
22 22 C 1.36939 * 119.99631 * 84.99662 * 21 2 1
23 23 H 1.08000 * 120.00486 * 0.02562 * 22 21 2
24 24 C 1.38815 * 119.99623 * 180.02562 * 22 21 2
25 25 N 1.31625 * 120.00192 * 359.97438 * 24 22 21
26 26 Si 1.86800 * 119.99819 * 180.02562 * 24 22 21
27 27 H 1.48497 * 109.47382 * 359.97438 * 26 24 22
28 28 H 1.48493 * 109.47213 * 119.99952 * 26 24 22
29 29 H 1.48506 * 109.46867 * 239.99842 * 26 24 22
30 30 H 1.09005 * 109.46713 * 300.00691 * 1 2 3
31 31 H 1.09002 * 109.46911 * 60.00306 * 1 2 3
32 32 H 1.08992 * 109.47188 * 180.02562 * 1 2 3
33 33 H 1.09000 * 109.46866 * 64.99924 * 4 2 1
34 34 H 1.09001 * 109.46611 * 305.00041 * 4 2 1
35 35 H 1.09000 * 109.47486 * 60.00167 * 5 4 2
36 36 H 1.09001 * 109.47362 * 299.99445 * 5 4 2
37 37 H 0.96995 * 120.00050 * 359.72237 * 6 5 4
38 38 H 1.08998 * 109.47624 * 60.00174 * 11 9 7
39 39 H 1.09002 * 109.47045 * 179.97438 * 11 9 7
40 40 H 1.09000 * 109.47140 * 299.99705 * 11 9 7
41 41 H 1.09004 * 109.46772 * 59.99944 * 18 17 16
42 42 H 1.08998 * 109.46750 * 179.97438 * 18 17 16
43 43 H 1.08995 * 109.47160 * 299.99628 * 18 17 16
44 44 H 1.08992 * 109.47537 * 60.00198 * 19 17 16
45 45 H 1.09008 * 109.46824 * 180.02562 * 19 17 16
46 46 H 1.09001 * 109.46598 * 299.99759 * 19 17 16
47 47 H 1.09000 * 109.46931 * 60.00301 * 20 17 16
48 48 H 1.08995 * 109.46832 * 180.02562 * 20 17 16
49 49 H 1.09000 * 109.46680 * 300.00233 * 20 17 16
50 50 H 0.97001 * 120.00257 * 265.00388 * 21 2 1
51 51 H 0.96994 * 119.99967 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5648 -0.6132 1.3138
6 7 4.0532 -1.3043 2.5097
7 6 5.3740 -1.3397 2.7754
8 8 6.1583 -0.7998 2.0241
9 6 5.8764 -2.0500 4.0058
10 1 5.5883 -3.1003 3.9620
11 6 5.2659 -1.4053 5.2518
12 7 7.3364 -1.9467 4.0675
13 7 8.0259 -0.8577 4.1228
14 7 9.2764 -1.1600 4.1694
15 7 9.4083 -2.4412 4.1356
16 6 8.2108 -2.9700 4.0713
17 6 7.8775 -4.4385 4.0126
18 6 7.1126 -4.7366 2.7215
19 6 9.1704 -5.2563 4.0399
20 6 7.0113 -4.8135 5.2168
21 7 2.0184 -0.6907 -1.1961
22 6 2.1492 -0.0076 -2.3757
23 1 1.8926 1.0404 -2.4242
24 6 2.6115 -0.6622 -3.5092
25 7 2.9246 -1.9392 -3.4500
26 14 2.7905 0.2698 -5.1182
27 1 2.3765 1.6822 -4.9209
28 1 4.2074 0.2260 -5.5605
29 1 1.9294 -0.3582 -6.1523
30 1 -0.3633 0.5140 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0276 0.0005
33 1 1.7516 -1.7714 1.2057
34 1 1.6054 -0.2615 2.1370
35 1 3.8532 0.4371 1.3574
36 1 3.9995 -1.0728 0.4261
37 1 3.4256 -1.7325 3.1126
38 1 4.1796 -1.4825 5.2058
39 1 5.6289 -1.9193 6.1418
40 1 5.5540 -0.3549 5.2956
41 1 7.7298 -4.4694 1.8637
42 1 6.8720 -5.7988 2.6789
43 1 6.1916 -4.1540 2.7021
44 1 9.7153 -5.0440 4.9597
45 1 8.9294 -6.3185 3.9970
46 1 9.7874 -4.9891 3.1820
47 1 6.0903 -4.2309 5.1973
48 1 6.7707 -5.8757 5.1745
49 1 7.5563 -4.6011 6.1365
50 1 2.2491 -1.6319 -1.1525
51 1 3.2473 -2.3967 -4.2421
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001480768094.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:34:16
Heat of formation + Delta-G solvation = 50.898099 kcal
Electronic energy + Delta-G solvation = -30487.084109 eV
Core-core repulsion = 26458.225938 eV
Total energy + Delta-G solvation = -4028.858171 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.217 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-45.37900 -41.21643 -38.55962 -38.19891 -36.91772 -36.04817 -34.25896 -33.17519
-32.35005 -30.93800 -29.53028 -28.53652 -28.32892 -26.62012 -25.90390 -25.01037
-24.84801 -23.48358 -21.97044 -21.29731 -20.97638 -19.39017 -19.02038 -18.37997
-17.71518 -17.12877 -16.80520 -16.70269 -16.45809 -15.86082 -15.44283 -15.35362
-15.23569 -14.95925 -14.72833 -14.34995 -14.19287 -13.90348 -13.80358 -13.57532
-13.55318 -13.29386 -13.25230 -13.05892 -12.95557 -12.88206 -12.74219 -12.72159
-12.63930 -12.33578 -12.28806 -12.24320 -12.19535 -12.11662 -12.05440 -11.80567
-11.64773 -11.60816 -11.21937 -10.99335 -10.90869 -10.27569 -8.98123 -7.95076
-5.20553 0.11207 0.76728 1.10740 1.24944 1.43264 1.45310 1.53395
1.86143 2.54995 2.74433 3.01372 3.32420 3.37549 3.39956 3.44145
3.77275 3.91320 3.92216 3.99253 4.01483 4.20236 4.24682 4.34613
4.43559 4.45923 4.52942 4.61476 4.66462 4.67417 4.77729 4.79049
4.85181 4.87226 4.91624 4.93562 4.99302 5.02901 5.05667 5.08783
5.18631 5.20874 5.28882 5.32705 5.36672 5.41437 5.53805 5.63426
6.29102 6.31112 7.01210 7.35509 7.48117 8.14051 8.34496 9.28442
Molecular weight = 338.22amu
Principal moments of inertia in cm(-1)
A = 0.013113 B = 0.002651 C = 0.002484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2134.700262 B =10558.598367 C =11267.722563
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.162 3.838
3 H 0.038 0.962
4 C -0.114 4.114
5 C 0.133 3.867
6 N -0.693 5.693
7 C 0.497 3.503
8 O -0.573 6.573
9 C 0.116 3.884
10 H 0.183 0.817
11 C -0.159 4.159
12 N -0.286 5.286
13 N -0.092 5.092
14 N -0.116 5.116
15 N -0.328 5.328
16 C 0.202 3.798
17 C 0.013 3.987
18 C -0.153 4.153
19 C -0.131 4.131
20 C -0.148 4.148
21 N -0.735 5.735
22 C -0.230 4.230
23 H 0.072 0.928
24 C -0.076 4.076
25 N -0.967 5.967
26 Si 0.961 3.039
27 H -0.267 1.267
28 H -0.301 1.301
29 H -0.292 1.292
30 H 0.077 0.923
31 H 0.029 0.971
32 H 0.048 0.952
33 H 0.080 0.920
34 H 0.111 0.889
35 H 0.049 0.951
36 H 0.037 0.963
37 H 0.425 0.575
38 H 0.135 0.865
39 H 0.102 0.898
40 H 0.062 0.938
41 H 0.038 0.962
42 H 0.115 0.885
43 H 0.056 0.944
44 H 0.063 0.937
45 H 0.101 0.899
46 H 0.044 0.956
47 H 0.073 0.927
48 H 0.110 0.890
49 H 0.066 0.934
50 H 0.373 0.627
51 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.749 -10.215 26.234 28.163
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.053 3.947
3 H 0.057 0.943
4 C -0.152 4.152
5 C 0.009 3.991
6 N -0.346 5.346
7 C 0.281 3.719
8 O -0.451 6.451
9 C 0.011 3.989
10 H 0.199 0.801
11 C -0.217 4.217
12 N -0.088 5.088
13 N -0.078 5.078
14 N -0.109 5.109
15 N -0.176 5.176
16 C -0.076 4.076
17 C 0.009 3.991
18 C -0.211 4.211
19 C -0.189 4.189
20 C -0.206 4.206
21 N -0.376 5.376
22 C -0.362 4.362
23 H 0.090 0.910
24 C -0.268 4.268
25 N -0.619 5.619
26 Si 0.791 3.209
27 H -0.192 1.192
28 H -0.229 1.229
29 H -0.219 1.219
30 H 0.095 0.905
31 H 0.048 0.952
32 H 0.067 0.933
33 H 0.098 0.902
34 H 0.130 0.870
35 H 0.068 0.932
36 H 0.055 0.945
37 H 0.264 0.736
38 H 0.153 0.847
39 H 0.121 0.879
40 H 0.081 0.919
41 H 0.057 0.943
42 H 0.133 0.867
43 H 0.074 0.926
44 H 0.082 0.918
45 H 0.120 0.880
46 H 0.063 0.937
47 H 0.091 0.909
48 H 0.129 0.871
49 H 0.085 0.915
50 H 0.205 0.795
51 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges 0.715 -8.521 25.656 27.044
hybrid contribution -0.152 -0.117 -1.729 1.740
sum 0.563 -8.638 23.927 25.445
Atomic orbital electron populations
1.22258 0.96990 1.01202 1.00835 1.20484 0.93248 0.95135 0.85802
0.94341 1.21925 0.91757 1.02596 0.98958 1.21170 0.95783 0.96043
0.86097 1.45647 1.06017 1.56121 1.26859 1.20755 0.83595 0.80908
0.86682 1.90865 1.56737 1.46828 1.50642 1.22415 0.72843 1.06363
0.97236 0.80057 1.22328 1.04370 1.01813 0.93190 1.48264 1.09992
1.03750 1.46794 1.78822 1.00062 1.11742 1.17161 1.78578 1.08408
1.06963 1.16944 1.74863 1.21161 1.01280 1.20343 1.26892 0.84602
0.96504 0.99649 1.19624 0.99659 0.80523 0.99266 1.22148 0.99071
1.05298 0.94563 1.21776 0.94029 1.00462 1.02610 1.22163 0.98545
1.05191 0.94690 1.42649 1.78365 1.10278 1.06268 1.19601 1.34102
0.93984 0.88520 0.91036 1.25418 1.03456 0.96856 1.01117 1.69787
1.53055 1.09995 1.29045 0.85247 0.76494 0.78411 0.80742 1.19178
1.22879 1.21922 0.90451 0.95189 0.93326 0.90157 0.87036 0.93244
0.94480 0.73630 0.84656 0.87934 0.91913 0.94300 0.86666 0.92551
0.91785 0.88044 0.93669 0.90863 0.87135 0.91455 0.79495 0.94328
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.58 9.49 71.98 0.68 -3.90 16
2 C 0.16 5.56 2.89 44.99 0.13 5.69 16
3 H 0.04 1.41 8.08 -2.38 -0.02 1.39 16
4 C -0.11 -2.71 4.87 30.60 0.15 -2.56 16
5 C 0.13 3.87 5.56 86.38 0.48 4.35 16
6 N -0.69 -13.56 5.45 -463.05 -2.52 -16.09 16
7 C 0.50 12.64 7.18 87.66 0.63 13.27 16
8 O -0.57 -22.84 15.87 -3.04 -0.05 -22.88 16
9 C 0.12 1.85 2.25 44.24 0.10 1.95 16
10 H 0.18 1.41 3.73 -2.39 -0.01 1.40 16
11 C -0.16 -1.32 9.31 71.98 0.67 -0.65 16
12 N -0.29 -7.13 2.76 -321.38 -0.89 -8.01 16
13 N -0.09 -3.08 12.41 37.02 0.46 -2.62 16
14 N -0.12 -4.17 13.43 37.01 0.50 -3.67 16
15 N -0.33 -10.33 11.71 -50.45 -0.59 -10.92 16
16 C 0.20 4.83 6.40 138.13 0.88 5.71 16
17 C 0.01 0.18 0.75 -52.93 -0.04 0.14 16
18 C -0.15 -2.14 8.31 71.98 0.60 -1.54 16
19 C -0.13 -1.73 8.00 71.98 0.58 -1.15 16
20 C -0.15 -0.81 8.31 71.98 0.60 -0.21 16
21 N -0.73 -34.74 4.57 -322.92 -1.48 -36.22 16
22 C -0.23 -12.56 9.93 84.03 0.83 -11.72 16
23 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16
24 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16
25 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16
26 Si 0.96 47.10 29.55 68.60 2.03 49.12 16
27 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16
28 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16
29 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16
30 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16
31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16
34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16
35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
36 H 0.04 1.48 7.75 -2.39 -0.02 1.46 16
37 H 0.42 3.64 7.88 -92.71 -0.73 2.91 16
38 H 0.14 0.02 7.56 -2.39 -0.02 0.00 16
39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16
40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
41 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16
42 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16
43 H 0.06 0.76 5.58 -2.39 -0.01 0.74 16
44 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16
45 H 0.10 0.69 8.14 -2.38 -0.02 0.68 16
46 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16
47 H 0.07 0.16 5.58 -2.39 -0.01 0.15 16
48 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16
49 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16
50 H 0.37 18.94 7.80 -92.71 -0.72 18.21 16
51 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16
Total: -1.00 -89.23 411.12 3.99 -85.24
By element:
Atomic # 1 Polarization: 19.97 SS G_CDS: -0.51 Total: 19.46 kcal
Atomic # 6 Polarization: -1.33 SS G_CDS: 6.76 Total: 5.43 kcal
Atomic # 7 Polarization: -132.14 SS G_CDS: -4.24 Total: -136.38 kcal
Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.88 kcal
Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal
Total: -89.23 3.99 -85.24 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001480768094.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.140 kcal
(2) G-P(sol) polarization free energy of solvation -89.231 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.898 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds