Wall clock time and date at job start Tue Mar 31 2020 21:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.50703 * 109.47292 * 240.00025 * 2 1 3 5 5 O 1.21279 * 119.99926 * 240.00082 * 4 2 1 6 6 N 1.34775 * 119.99773 * 59.99683 * 4 2 1 7 7 C 1.46496 * 119.99642 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46995 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47196 * 304.99671 * 9 8 7 11 11 C 1.53001 * 109.47328 * 184.99912 * 9 8 7 12 12 N 1.46500 * 109.47520 * 64.99751 * 9 8 7 13 13 C 1.36931 * 120.00339 * 205.00028 * 12 9 8 14 14 H 1.08003 * 119.99958 * 0.02562 * 13 12 9 15 15 C 1.38818 * 120.00146 * 179.97438 * 13 12 9 16 16 N 1.31614 * 119.99788 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99880 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47342 * 90.00080 * 17 15 13 19 19 H 1.48501 * 109.46726 * 209.99709 * 17 15 13 20 20 H 1.48498 * 109.47314 * 329.99808 * 17 15 13 21 21 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 22 22 N 1.29023 * 126.43583 * 60.02977 * 21 2 1 23 23 N 1.28736 * 108.80554 * 179.97438 * 22 21 2 24 24 N 1.28846 * 109.39821 * 0.02562 * 23 22 21 25 25 C 1.31074 * 107.99124 * 359.74739 * 24 23 22 26 26 C 1.50691 * 126.65882 * 180.24261 * 25 24 23 27 27 C 1.52998 * 109.47352 * 240.17311 * 26 25 24 28 28 C 1.53000 * 109.47381 * 0.17764 * 26 25 24 29 29 C 1.53008 * 109.46977 * 120.17626 * 26 25 24 30 30 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 31 31 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 33 33 H 0.96998 * 120.00166 * 0.02562 * 6 4 2 34 34 H 1.08998 * 109.47245 * 299.99628 * 7 6 4 35 35 H 1.09001 * 109.47464 * 60.00642 * 7 6 4 36 36 H 1.09001 * 109.47002 * 299.99701 * 8 7 6 37 37 H 1.08996 * 109.47451 * 60.00130 * 8 7 6 38 38 H 1.09001 * 109.46883 * 59.99398 * 11 9 8 39 39 H 1.09000 * 109.47264 * 179.97438 * 11 9 8 40 40 H 1.09002 * 109.46786 * 300.00010 * 11 9 8 41 41 H 0.97006 * 119.99922 * 25.00036 * 12 9 8 42 42 H 0.97000 * 119.99728 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.47237 * 60.00088 * 27 26 25 44 44 H 1.09001 * 109.47485 * 179.97438 * 27 26 25 45 45 H 1.09000 * 109.47298 * 300.00362 * 27 26 25 46 46 H 1.09001 * 109.47307 * 59.99769 * 28 26 25 47 47 H 1.09009 * 109.47004 * 179.97438 * 28 26 25 48 48 H 1.08995 * 109.46949 * 299.99598 * 28 26 25 49 49 H 1.09000 * 109.47068 * 60.00008 * 29 26 25 50 50 H 1.08993 * 109.47091 * 179.97438 * 29 26 25 51 51 H 1.09001 * 109.47026 * 299.99811 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6506 8 6 1.6852 -0.2192 -4.9000 9 6 2.1943 -0.9411 -6.1492 10 1 3.2805 -1.0205 -6.1057 11 6 1.7902 -0.1507 -7.3953 12 7 1.6088 -2.2826 -6.2107 13 6 2.2531 -3.2804 -6.8920 14 1 3.1933 -3.0785 -7.3838 15 6 1.6986 -4.5517 -6.9498 16 7 0.5536 -4.7981 -6.3493 17 14 2.5781 -5.9130 -7.8787 18 1 3.4982 -6.6266 -6.9572 19 1 1.5786 -6.8693 -8.4188 20 1 3.3564 -5.3253 -8.9985 21 7 2.0184 -0.6906 1.1962 22 7 1.7849 -1.9170 1.5221 23 7 2.3779 -2.1705 2.6362 24 7 2.9976 -1.1158 3.0408 25 6 2.7990 -0.1663 2.1592 26 6 3.3377 1.2399 2.2147 27 6 2.1729 2.2317 2.2367 28 6 4.1797 1.4140 3.4802 29 6 4.2074 1.5019 0.9834 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1494 0.5389 -2.5435 34 1 3.2846 -0.9412 -3.6509 35 1 1.8309 -1.9684 -3.6506 36 1 0.5952 -0.2185 -4.9000 37 1 2.0493 0.8082 -4.9000 38 1 2.2258 0.8474 -7.3495 39 1 2.1532 -0.6648 -8.2852 40 1 0.7039 -0.0714 -7.4388 41 1 0.7645 -2.4641 -5.7687 42 1 0.1663 -5.6865 -6.3894 43 1 1.5532 2.0451 3.1138 44 1 2.5625 3.2489 2.2773 45 1 1.5730 2.1077 1.3351 46 1 5.0096 0.7075 3.4646 47 1 4.5697 2.4312 3.5201 48 1 3.5601 1.2275 4.3573 49 1 3.6075 1.3779 0.0818 50 1 4.5966 2.5192 1.0233 51 1 5.0372 0.7953 0.9678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480768096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:19 Heat of formation + Delta-G solvation = 79.478530 kcal Electronic energy + Delta-G solvation = -30414.483449 eV Core-core repulsion = 26386.864618 eV Total energy + Delta-G solvation = -4027.618830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.34728 -40.13088 -37.88086 -36.83164 -35.92531 -34.68036 -32.58040 -32.04728 -31.36632 -29.31100 -28.17018 -27.99043 -27.94341 -25.84190 -24.23934 -24.01500 -23.46797 -22.33754 -20.87118 -20.37991 -19.78605 -18.14537 -17.48458 -17.23308 -16.72671 -16.12934 -15.85579 -15.56347 -14.95525 -14.71888 -14.63181 -14.22647 -14.06544 -13.64471 -13.55887 -13.32478 -13.11648 -13.00248 -12.88530 -12.82675 -12.57808 -12.52103 -12.26634 -12.22371 -12.12532 -11.93336 -11.65768 -11.62565 -11.40805 -11.24530 -11.15444 -11.06349 -10.99603 -10.79239 -10.69902 -10.37116 -10.20433 -10.04822 -9.82992 -9.67038 -9.13201 -8.92253 -6.98815 -5.77491 -3.06643 1.11593 1.61763 2.19968 2.25914 2.86013 3.44639 3.45751 3.49626 3.51236 3.79570 3.95037 4.08823 4.20766 4.27541 4.47811 4.58989 4.68904 4.84998 4.90607 4.99849 5.11276 5.14114 5.15428 5.22259 5.27634 5.27725 5.37311 5.41322 5.48227 5.49954 5.53888 5.59187 5.65840 5.68181 5.77633 5.87865 5.95148 5.97505 6.07823 6.18852 6.27569 6.32405 6.48621 6.60114 6.79085 6.99208 7.24815 7.69674 7.94017 8.40646 8.57639 9.52274 10.07620 10.41860 11.45023 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.002514 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.983034 B =11135.812155 C =11981.318217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 H 0.143 0.857 4 C 0.500 3.500 5 O -0.503 6.503 6 N -0.718 5.718 7 C 0.122 3.878 8 C -0.132 4.132 9 C 0.174 3.826 10 H 0.049 0.951 11 C -0.163 4.163 12 N -0.724 5.724 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.905 3.095 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.282 1.282 21 N -0.288 5.288 22 N -0.062 5.062 23 N -0.081 5.081 24 N -0.301 5.301 25 C 0.190 3.810 26 C 0.014 3.986 27 C -0.151 4.151 28 C -0.131 4.131 29 C -0.151 4.151 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.398 0.602 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.081 0.919 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 23.376 16.026 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 H 0.160 0.840 4 C 0.281 3.719 5 O -0.376 6.376 6 N -0.370 5.370 7 C 0.000 4.000 8 C -0.171 4.171 9 C 0.064 3.936 10 H 0.067 0.933 11 C -0.224 4.224 12 N -0.366 5.366 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.736 3.264 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.208 1.208 21 N -0.090 5.090 22 N -0.047 5.047 23 N -0.074 5.074 24 N -0.149 5.149 25 C -0.088 4.088 26 C 0.010 3.990 27 C -0.209 4.209 28 C -0.189 4.189 29 C -0.209 4.209 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.580 21.138 16.529 26.879 hybrid contribution -0.148 0.225 -1.084 1.117 sum 1.432 21.362 15.444 26.399 Atomic orbital electron populations 1.22196 0.89274 1.05991 1.04670 1.21967 0.98536 0.97030 0.81498 0.84003 1.20029 0.81970 0.85489 0.84376 1.90878 1.36310 1.24521 1.85935 1.45987 1.53465 1.31980 1.05546 1.21573 0.99258 0.97866 0.81328 1.22072 1.01457 0.98768 0.94770 1.20142 0.96730 0.86236 0.90498 0.93302 1.22428 1.00844 0.98229 1.00862 1.42444 1.25930 1.04500 1.63685 1.19195 1.03122 0.89338 1.25510 0.91231 1.24729 0.97331 0.97628 1.01070 1.69644 1.18935 1.21366 1.48011 0.86226 0.78522 0.82282 0.79373 1.21660 1.21799 1.20811 1.48031 1.34077 1.08806 1.18063 1.78998 1.19130 0.95999 1.10556 1.78657 1.07513 1.17797 1.03427 1.74960 1.19639 0.96630 1.23625 1.25994 0.95872 0.99640 0.87270 1.19248 0.96274 0.84232 0.99216 1.22108 0.96958 0.99162 1.02678 1.21747 0.99845 1.02379 0.94945 1.22091 0.99996 1.03625 0.95215 0.88635 0.89426 0.90215 0.76824 0.91507 0.89263 0.91425 0.91804 0.94586 0.92653 0.93494 0.78297 0.93488 0.91360 0.90057 0.92375 0.91319 0.91219 0.91339 0.92675 0.90032 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.31 37.16 0.35 -0.76 16 2 C 0.12 1.06 2.25 -69.08 -0.16 0.90 16 3 H 0.14 0.75 3.73 -51.93 -0.19 0.56 16 4 C 0.50 6.53 7.19 -10.98 -0.08 6.45 16 5 O -0.50 -9.58 15.88 5.56 0.09 -9.49 16 6 N -0.72 -7.81 5.45 -60.29 -0.33 -8.14 16 7 C 0.12 1.81 5.56 -4.04 -0.02 1.79 16 8 C -0.13 -1.77 4.87 -26.73 -0.13 -1.90 16 9 C 0.17 3.13 2.89 -67.93 -0.20 2.94 16 10 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 11 C -0.16 -2.68 9.49 37.16 0.35 -2.32 16 12 N -0.72 -17.13 4.57 -53.42 -0.24 -17.37 16 13 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 14 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 17 Si 0.90 22.61 29.55 -169.99 -5.02 17.58 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 N -0.29 -3.63 2.76 -52.92 -0.15 -3.77 16 22 N -0.06 -1.02 12.42 60.35 0.75 -0.27 16 23 N -0.08 -1.39 13.43 60.35 0.81 -0.58 16 24 N -0.30 -4.46 11.71 32.70 0.38 -4.08 16 25 C 0.19 2.22 6.40 -155.43 -1.00 1.22 16 26 C 0.01 0.10 0.75 -155.66 -0.12 -0.02 16 27 C -0.15 -0.64 8.31 37.16 0.31 -0.34 16 28 C -0.13 -0.84 8.00 37.16 0.30 -0.55 16 29 C -0.15 -0.96 8.31 37.16 0.31 -0.65 16 30 H 0.09 0.37 7.56 -51.93 -0.39 -0.02 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.40 2.63 7.89 -40.82 -0.32 2.31 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.74 7.75 -51.93 -0.40 1.34 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.38 9.69 7.80 -40.82 -0.32 9.38 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.06 0.19 5.58 -51.93 -0.29 -0.10 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.05 0.34 5.58 -51.93 -0.29 0.05 16 50 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 411.15 15.07 6.20 6.20 Total: -1.00 -37.18 411.15 -5.63 -42.81 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.52 Total: 4.78 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.33 Total: -0.33 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 1.95 Total: -61.55 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.18 -5.63 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480768096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.293 kcal (2) G-P(sol) polarization free energy of solvation -37.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds