Wall clock time and date at job start Tue Mar 31 2020 20:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99881 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00232 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00082 * 293.79602 * 5 4 3 7 7 C 1.53053 * 109.36142 * 176.81322 * 6 5 4 8 8 N 1.46952 * 109.36370 * 58.40496 * 7 6 5 9 9 C 1.46905 * 110.99968 * 176.80849 * 8 7 6 10 10 C 1.50697 * 109.47136 * 293.80150 * 9 8 7 11 11 O 1.21290 * 120.00056 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.37091 * 120.00160 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99724 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00259 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99748 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00247 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47166 * 59.99723 * 17 15 13 19 19 H 1.48494 * 109.47308 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46805 * 299.99970 * 17 15 13 21 21 C 1.46950 * 110.88370 * 300.67694 * 8 7 6 22 22 C 1.46962 * 110.99604 * 170.00077 * 5 4 3 23 23 C 1.34773 * 119.99970 * 180.02562 * 2 1 3 24 24 O 1.21284 * 119.99889 * 179.97438 * 23 2 1 25 25 C 1.50702 * 120.00140 * 359.97438 * 23 2 1 26 26 C 1.52999 * 117.50015 * 248.75086 * 25 23 2 27 27 C 1.53002 * 117.49710 * 180.08919 * 25 23 2 28 28 H 1.08997 * 109.47514 * 90.00045 * 1 2 3 29 29 H 1.09003 * 109.46763 * 209.99449 * 1 2 3 30 30 H 1.08995 * 109.47081 * 329.99868 * 1 2 3 31 31 H 1.09000 * 109.47175 * 150.00363 * 3 2 1 32 32 H 1.09001 * 109.47297 * 29.99871 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 34 34 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 35 35 H 1.08995 * 109.49528 * 296.78228 * 6 5 4 36 36 H 1.09000 * 109.48453 * 56.85119 * 6 5 4 37 37 H 1.08996 * 109.49096 * 298.43807 * 7 6 5 38 38 H 1.09006 * 109.48656 * 178.37334 * 7 6 5 39 39 H 1.09002 * 109.47123 * 53.79963 * 9 8 7 40 40 H 1.08998 * 109.47102 * 173.79674 * 9 8 7 41 41 H 0.96999 * 119.99485 * 359.97438 * 12 10 9 42 42 H 0.97003 * 119.99942 * 180.02562 * 16 15 13 43 43 H 1.08999 * 109.48896 * 299.35965 * 21 8 7 44 44 H 1.08997 * 109.51192 * 179.30067 * 21 8 7 45 45 H 1.08995 * 109.48657 * 303.15809 * 22 5 4 46 46 H 1.08996 * 109.48862 * 63.22185 * 22 5 4 47 47 H 1.08998 * 115.54554 * 34.42359 * 25 23 2 48 48 H 1.08994 * 117.50080 * 0.02562 * 26 25 23 49 49 H 1.09006 * 117.49548 * 145.02213 * 26 25 23 50 50 H 1.08998 * 117.49890 * 214.97831 * 27 25 23 51 51 H 1.08997 * 117.49839 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1864 2.9830 -1.4425 6 6 2.3620 4.0664 -0.8890 7 6 3.1875 5.3540 -0.8328 8 7 3.6571 5.6911 -2.1839 9 6 4.3911 6.9637 -2.1839 10 6 3.4468 8.0882 -1.8451 11 8 2.2773 7.8528 -1.6257 12 7 3.9016 9.3556 -1.7869 13 6 3.0424 10.3787 -1.4792 14 1 2.0011 10.1691 -1.2838 15 6 3.5113 11.6853 -1.4186 16 7 4.7785 11.9402 -1.6558 17 14 2.3409 13.0792 -0.9987 18 1 1.7550 12.8456 0.3458 19 1 3.0826 14.3656 -0.9993 20 1 1.2542 13.1345 -2.0093 21 6 4.4814 4.6078 -2.7374 22 6 3.6560 3.3201 -2.7936 23 6 2.1389 -1.1672 -0.0005 24 8 3.3517 -1.1672 -0.0010 25 6 1.3854 -2.4723 -0.0005 26 6 1.4586 -3.3303 1.2641 27 6 2.2076 -3.7627 0.0010 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 3.1500 1.1384 0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.0414 0.9508 -1.9564 34 1 1.5000 1.8408 -1.9563 35 1 1.4901 4.2209 -1.5244 36 1 2.0370 3.7986 0.1163 37 1 4.0448 5.2080 -0.1757 38 1 2.5692 6.1658 -0.4496 39 1 5.1887 6.9231 -1.4420 40 1 4.8211 7.1351 -3.1706 41 1 4.8367 9.5438 -1.9627 42 1 5.1059 12.8523 -1.6132 43 1 5.3534 4.4532 -2.1019 44 1 4.8068 4.8753 -3.7427 45 1 4.2742 2.5083 -3.1768 46 1 2.7987 3.4661 -3.4507 47 1 0.4477 -2.4737 -0.5561 48 1 2.0514 -2.9507 2.0963 49 1 0.5691 -3.8966 1.5403 50 1 1.8105 -4.6131 -0.5532 51 1 3.2934 -3.6676 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481465752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:52 Heat of formation + Delta-G solvation = -19.447310 kcal Electronic energy + Delta-G solvation = -29269.171261 eV Core-core repulsion = 25204.969934 eV Total energy + Delta-G solvation = -4064.201328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49297 -39.36169 -37.97555 -36.87400 -35.95271 -34.94268 -33.79315 -31.25765 -30.90148 -30.38988 -28.01839 -26.97588 -25.59405 -24.33347 -23.61879 -23.15954 -22.86396 -21.61437 -19.66480 -19.25477 -19.15563 -17.84476 -17.81838 -16.81477 -16.03019 -15.98840 -15.60310 -15.34388 -15.02162 -14.86894 -14.65285 -14.48843 -14.27139 -13.94902 -13.71917 -13.71444 -13.40713 -13.25641 -13.06788 -12.97368 -12.56121 -12.33588 -12.15667 -11.97839 -11.76082 -11.56510 -11.47192 -11.17877 -11.07523 -11.06002 -10.98408 -10.87329 -10.61958 -10.56103 -10.42682 -10.19639 -10.10066 -9.44823 -9.05404 -8.45900 -8.31977 -7.95526 -7.79190 -6.39813 -3.80597 2.14029 2.56276 3.20836 3.26518 3.30678 3.42191 3.89313 3.93654 4.03936 4.09966 4.27257 4.33979 4.43963 4.60183 4.72595 4.77453 4.87274 4.96867 5.06534 5.07409 5.14270 5.24694 5.27200 5.27595 5.29879 5.32476 5.42822 5.49237 5.51545 5.58081 5.65284 5.69789 5.70981 5.78814 5.84007 5.94318 5.96638 6.02672 6.16065 6.26336 6.31936 6.44333 6.95813 6.98990 7.05035 7.35864 7.46492 7.56554 7.85899 8.08232 8.64117 9.19869 9.56799 10.08788 10.77869 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.001750 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.796837 B =15998.322733 C =16583.251597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.118 3.882 4 C 0.045 3.955 5 N -0.538 5.538 6 C 0.059 3.941 7 C 0.055 3.945 8 N -0.518 5.518 9 C 0.047 3.953 10 C 0.445 3.555 11 O -0.579 6.579 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.056 3.944 22 C 0.063 3.937 23 C 0.542 3.458 24 O -0.534 6.534 25 C -0.196 4.196 26 C -0.153 4.153 27 C -0.148 4.148 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.042 0.958 47 H 0.124 0.876 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.103 0.897 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 -27.724 2.409 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.005 4.005 4 C -0.084 4.084 5 N -0.264 5.264 6 C -0.069 4.069 7 C -0.073 4.073 8 N -0.242 5.242 9 C -0.085 4.085 10 C 0.230 3.770 11 O -0.463 6.463 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.072 4.072 22 C -0.065 4.065 23 C 0.330 3.670 24 O -0.410 6.410 25 C -0.217 4.217 26 C -0.190 4.190 27 C -0.186 4.186 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.125 0.875 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.060 0.940 47 H 0.142 0.858 48 H 0.118 0.882 49 H 0.122 0.878 50 H 0.121 0.879 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.607 -27.663 2.560 28.342 hybrid contribution -0.099 1.023 -0.097 1.033 sum -5.707 -26.640 2.463 27.356 Atomic orbital electron populations 1.21854 0.79204 1.03497 1.02030 1.47744 1.07173 1.05965 1.73765 1.21512 0.98289 0.83648 0.97041 1.22356 0.96885 0.92152 0.96997 1.62113 1.39337 1.02286 1.22640 1.22226 0.94995 0.90271 0.99431 1.22320 0.98753 0.97237 0.88948 1.61749 1.38282 1.01086 1.23126 1.21832 0.95033 0.89801 1.01796 1.19754 0.89079 0.83600 0.84563 1.90468 1.17829 1.83337 1.54712 1.41863 1.11930 1.04992 1.61294 1.19641 0.93905 0.85262 1.44072 0.87999 1.25252 0.96534 0.98641 0.97499 1.69605 1.13618 1.21607 1.49489 0.85923 0.79632 0.79498 0.79177 1.19954 1.21000 1.19939 1.22165 0.94557 0.90482 1.00030 1.22099 0.98691 0.96771 0.88939 1.19715 0.87337 0.84370 0.75579 1.90719 1.13810 1.87169 1.49348 1.22237 1.02748 0.90886 1.05836 1.22950 1.03246 1.01393 0.91407 1.22977 1.00162 0.95205 1.00211 0.92515 0.90703 0.90687 0.88908 0.90203 0.90684 0.94822 0.93717 0.90669 0.95074 0.87512 0.93405 0.89401 0.77485 0.91849 0.94252 0.90402 0.90611 0.93954 0.85841 0.88223 0.87753 0.87891 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.05 59.85 0.60 1.02 16 2 N -0.61 -5.43 2.87 -181.56 -0.52 -5.96 16 3 C 0.12 1.20 5.38 -4.04 -0.02 1.18 16 4 C 0.05 0.51 5.28 -3.82 -0.02 0.49 16 5 N -0.54 -6.96 4.71 -234.46 -1.10 -8.07 16 6 C 0.06 0.82 5.41 -3.77 -0.02 0.80 16 7 C 0.06 0.93 5.26 -3.77 -0.02 0.91 16 8 N -0.52 -8.96 4.44 -235.91 -1.05 -10.01 16 9 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 10 C 0.44 10.54 7.48 -10.98 -0.08 10.46 16 11 O -0.58 -15.49 13.92 5.55 0.08 -15.41 16 12 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 13 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 14 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 17 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.06 0.78 5.61 -3.77 -0.02 0.76 16 22 C 0.06 0.81 5.61 -3.76 -0.02 0.78 16 23 C 0.54 5.62 7.46 -10.99 -0.08 5.54 16 24 O -0.53 -7.66 15.84 5.55 0.09 -7.57 16 25 C -0.20 -1.36 4.79 -91.77 -0.44 -1.80 16 26 C -0.15 -0.86 10.24 -26.69 -0.27 -1.14 16 27 C -0.15 -0.96 10.05 -26.69 -0.27 -1.23 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.28 6.64 -51.93 -0.34 -0.06 16 30 H 0.07 0.36 7.89 -51.93 -0.41 -0.05 16 31 H 0.09 1.15 7.42 -51.93 -0.39 0.76 16 32 H 0.08 0.73 6.24 -51.93 -0.32 0.40 16 33 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 34 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.91 6.34 -51.93 -0.33 0.58 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.11 2.13 5.85 -51.93 -0.30 1.83 16 39 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 41 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 45 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.12 0.59 7.27 -51.93 -0.38 0.22 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -33.38 406.50 -10.28 -43.66 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.60 Total: 8.85 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -0.94 Total: 10.62 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -2.01 Total: -62.34 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.99 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.38 -10.28 -43.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481465752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.217 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds