Wall clock time and date at job start Tue Mar 31 2020 20:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99881 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00232 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00082 * 293.79602 * 5 4 3 7 7 C 1.53053 * 109.36142 * 176.81322 * 6 5 4 8 8 N 1.46952 * 109.36370 * 58.40496 * 7 6 5 9 9 C 1.46905 * 110.99968 * 176.80849 * 8 7 6 10 10 C 1.50697 * 109.47136 * 293.80150 * 9 8 7 11 11 O 1.21290 * 120.00056 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.37091 * 120.00160 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99724 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00259 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99748 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00247 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47166 * 59.99723 * 17 15 13 19 19 H 1.48494 * 109.47308 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46805 * 299.99970 * 17 15 13 21 21 C 1.46950 * 110.88370 * 300.67694 * 8 7 6 22 22 C 1.46962 * 110.99604 * 170.00077 * 5 4 3 23 23 C 1.34773 * 119.99970 * 180.02562 * 2 1 3 24 24 O 1.21284 * 119.99889 * 179.97438 * 23 2 1 25 25 C 1.50702 * 120.00140 * 359.97438 * 23 2 1 26 26 C 1.52999 * 117.50015 * 248.75086 * 25 23 2 27 27 C 1.53002 * 117.49710 * 180.08919 * 25 23 2 28 28 H 1.08997 * 109.47514 * 90.00045 * 1 2 3 29 29 H 1.09003 * 109.46763 * 209.99449 * 1 2 3 30 30 H 1.08995 * 109.47081 * 329.99868 * 1 2 3 31 31 H 1.09000 * 109.47175 * 150.00363 * 3 2 1 32 32 H 1.09001 * 109.47297 * 29.99871 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 34 34 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 35 35 H 1.08995 * 109.49528 * 296.78228 * 6 5 4 36 36 H 1.09000 * 109.48453 * 56.85119 * 6 5 4 37 37 H 1.08996 * 109.49096 * 298.43807 * 7 6 5 38 38 H 1.09006 * 109.48656 * 178.37334 * 7 6 5 39 39 H 1.09002 * 109.47123 * 53.79963 * 9 8 7 40 40 H 1.08998 * 109.47102 * 173.79674 * 9 8 7 41 41 H 0.96999 * 119.99485 * 359.97438 * 12 10 9 42 42 H 0.97003 * 119.99942 * 180.02562 * 16 15 13 43 43 H 1.08999 * 109.48896 * 299.35965 * 21 8 7 44 44 H 1.08997 * 109.51192 * 179.30067 * 21 8 7 45 45 H 1.08995 * 109.48657 * 303.15809 * 22 5 4 46 46 H 1.08996 * 109.48862 * 63.22185 * 22 5 4 47 47 H 1.08998 * 115.54554 * 34.42359 * 25 23 2 48 48 H 1.08994 * 117.50080 * 0.02562 * 26 25 23 49 49 H 1.09006 * 117.49548 * 145.02213 * 26 25 23 50 50 H 1.08998 * 117.49890 * 214.97831 * 27 25 23 51 51 H 1.08997 * 117.49839 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1864 2.9830 -1.4425 6 6 2.3620 4.0664 -0.8890 7 6 3.1875 5.3540 -0.8328 8 7 3.6571 5.6911 -2.1839 9 6 4.3911 6.9637 -2.1839 10 6 3.4468 8.0882 -1.8451 11 8 2.2773 7.8528 -1.6257 12 7 3.9016 9.3556 -1.7869 13 6 3.0424 10.3787 -1.4792 14 1 2.0011 10.1691 -1.2838 15 6 3.5113 11.6853 -1.4186 16 7 4.7785 11.9402 -1.6558 17 14 2.3409 13.0792 -0.9987 18 1 1.7550 12.8456 0.3458 19 1 3.0826 14.3656 -0.9993 20 1 1.2542 13.1345 -2.0093 21 6 4.4814 4.6078 -2.7374 22 6 3.6560 3.3201 -2.7936 23 6 2.1389 -1.1672 -0.0005 24 8 3.3517 -1.1672 -0.0010 25 6 1.3854 -2.4723 -0.0005 26 6 1.4586 -3.3303 1.2641 27 6 2.2076 -3.7627 0.0010 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 3.1500 1.1384 0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.0414 0.9508 -1.9564 34 1 1.5000 1.8408 -1.9563 35 1 1.4901 4.2209 -1.5244 36 1 2.0370 3.7986 0.1163 37 1 4.0448 5.2080 -0.1757 38 1 2.5692 6.1658 -0.4496 39 1 5.1887 6.9231 -1.4420 40 1 4.8211 7.1351 -3.1706 41 1 4.8367 9.5438 -1.9627 42 1 5.1059 12.8523 -1.6132 43 1 5.3534 4.4532 -2.1019 44 1 4.8068 4.8753 -3.7427 45 1 4.2742 2.5083 -3.1768 46 1 2.7987 3.4661 -3.4507 47 1 0.4477 -2.4737 -0.5561 48 1 2.0514 -2.9507 2.0963 49 1 0.5691 -3.8966 1.5403 50 1 1.8105 -4.6131 -0.5532 51 1 3.2934 -3.6676 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481465752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:51 Heat of formation + Delta-G solvation = -44.267018 kcal Electronic energy + Delta-G solvation = -29270.247525 eV Core-core repulsion = 25204.969934 eV Total energy + Delta-G solvation = -4065.277591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.25952 -40.71752 -39.57558 -37.61972 -36.79941 -36.18054 -35.66252 -33.27667 -32.00674 -31.51119 -29.26404 -27.61990 -27.06882 -25.65104 -24.73721 -24.33832 -23.32379 -22.50406 -21.09470 -20.77041 -19.93433 -19.86327 -18.47349 -17.84901 -17.59139 -16.94833 -16.58955 -16.53974 -16.39624 -16.11002 -15.82657 -15.66494 -15.50371 -15.29491 -15.15170 -14.87567 -14.61527 -14.21221 -13.97611 -13.80072 -13.53844 -13.48914 -13.26328 -13.14980 -13.01730 -12.85149 -12.71827 -12.43298 -12.42539 -12.25876 -12.17654 -12.11683 -11.90264 -11.65097 -11.53811 -11.42942 -11.40434 -10.88879 -10.27018 -9.99271 -9.80156 -9.41727 -9.20222 -8.45179 -5.93897 1.40236 1.41898 1.41908 1.52916 1.87870 2.06165 2.28888 2.74659 2.87093 2.96440 3.21490 3.38799 3.50029 3.82702 3.85660 3.86762 3.97608 4.00833 4.11435 4.19431 4.23942 4.29323 4.33543 4.37869 4.38971 4.45730 4.49864 4.58491 4.62101 4.66507 4.72831 4.73945 4.82316 4.87732 4.90904 4.92073 4.94561 5.03058 5.05280 5.08021 5.22294 5.41593 5.45127 5.82214 5.91486 6.00512 6.11746 6.21668 6.33247 6.61884 7.11446 7.13909 7.57537 8.13175 8.71986 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.001750 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.796837 B =15998.322733 C =16583.251597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.122 3.878 4 C 0.056 3.944 5 N -0.544 5.544 6 C 0.070 3.930 7 C 0.058 3.942 8 N -0.534 5.534 9 C 0.058 3.942 10 C 0.442 3.558 11 O -0.613 6.613 12 N -0.574 5.574 13 C -0.333 4.333 14 H 0.080 0.920 15 C -0.013 4.013 16 N -0.921 5.921 17 Si 0.993 3.007 18 H -0.272 1.272 19 H -0.271 1.271 20 H -0.272 1.272 21 C 0.058 3.942 22 C 0.065 3.935 23 C 0.532 3.468 24 O -0.586 6.586 25 C -0.199 4.199 26 C -0.139 4.139 27 C -0.156 4.156 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.043 0.957 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.037 0.963 47 H 0.152 0.848 48 H 0.084 0.916 49 H 0.135 0.865 50 H 0.127 0.873 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -29.006 2.214 29.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.343 5.343 3 C -0.002 4.002 4 C -0.073 4.073 5 N -0.269 5.269 6 C -0.058 4.058 7 C -0.070 4.070 8 N -0.260 5.260 9 C -0.073 4.073 10 C 0.230 3.770 11 O -0.499 6.499 12 N -0.211 5.211 13 C -0.462 4.462 14 H 0.098 0.902 15 C -0.213 4.213 16 N -0.562 5.562 17 Si 0.817 3.183 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.197 1.197 21 C -0.070 4.070 22 C -0.063 4.063 23 C 0.322 3.678 24 O -0.466 6.466 25 C -0.220 4.220 26 C -0.177 4.177 27 C -0.193 4.193 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.111 0.889 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.055 0.945 47 H 0.170 0.830 48 H 0.103 0.897 49 H 0.153 0.847 50 H 0.145 0.855 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.741 -28.961 2.358 29.828 hybrid contribution 0.256 1.367 -0.038 1.391 sum -6.486 -27.594 2.320 28.441 Atomic orbital electron populations 1.22114 0.76757 1.05020 1.03188 1.47863 1.08641 1.05050 1.72744 1.21365 0.97733 0.84780 0.96278 1.22264 0.96713 0.90825 0.97522 1.62115 1.39433 1.02496 1.22886 1.22076 0.93977 0.89419 1.00318 1.22178 0.98515 0.97363 0.88912 1.61738 1.39293 1.01585 1.23367 1.21711 0.93829 0.88430 1.03316 1.20709 0.89456 0.84170 0.82682 1.90447 1.19791 1.83979 1.55688 1.41929 1.11817 1.05388 1.62006 1.19629 0.93586 0.86783 1.46234 0.90215 1.26038 0.98176 1.00345 0.96745 1.69672 1.14714 1.22420 1.49384 0.84985 0.77717 0.76778 0.78824 1.19687 1.19568 1.19738 1.22259 0.94305 0.89732 1.00690 1.22127 0.98641 0.96816 0.88742 1.20406 0.87018 0.85800 0.74590 1.90690 1.16124 1.87973 1.51832 1.22308 1.03350 0.88977 1.07325 1.23039 1.03794 1.00482 0.90343 1.23025 0.98886 0.95901 1.01505 0.91464 0.88583 0.89893 0.91418 0.88952 0.91632 0.94056 0.94941 0.88941 0.94957 0.91124 0.91843 0.87147 0.77096 0.91353 0.93884 0.88693 0.88734 0.94518 0.83034 0.89711 0.84742 0.85484 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.05 127.77 1.28 1.87 16 2 N -0.61 -10.14 2.87 -846.74 -2.43 -12.57 16 3 C 0.12 2.43 5.38 86.38 0.47 2.89 16 4 C 0.06 1.19 5.28 86.31 0.46 1.65 16 5 N -0.54 -13.56 4.71 -895.70 -4.22 -17.78 16 6 C 0.07 1.92 5.41 86.31 0.47 2.39 16 7 C 0.06 1.99 5.26 86.31 0.45 2.44 16 8 N -0.53 -18.18 4.44 -900.30 -4.00 -22.18 16 9 C 0.06 2.10 5.45 85.55 0.47 2.57 16 10 C 0.44 21.35 7.48 87.65 0.66 22.01 16 11 O -0.61 -33.82 13.92 -3.06 -0.04 -33.86 16 12 N -0.57 -29.80 5.29 -306.98 -1.62 -31.43 16 13 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 16 N -0.92 -50.09 13.05 21.66 0.28 -49.80 16 17 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C 0.06 1.51 5.61 86.31 0.48 2.00 16 22 C 0.06 1.56 5.61 86.31 0.48 2.04 16 23 C 0.53 10.81 7.46 87.66 0.65 11.46 16 24 O -0.59 -17.45 15.84 -3.04 -0.05 -17.49 16 25 C -0.20 -2.38 4.79 -11.54 -0.06 -2.44 16 26 C -0.14 -1.30 10.24 30.62 0.31 -0.98 16 27 C -0.16 -1.85 10.05 30.62 0.31 -1.54 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.41 6.64 -2.39 -0.02 0.39 16 30 H 0.08 0.58 7.89 -2.39 -0.02 0.56 16 31 H 0.07 1.71 7.42 -2.39 -0.02 1.70 16 32 H 0.09 1.58 6.24 -2.39 -0.01 1.56 16 33 H 0.07 1.55 8.03 -2.39 -0.02 1.53 16 34 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 2.18 6.34 -2.39 -0.02 2.16 16 37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 2.93 5.85 -2.38 -0.01 2.91 16 39 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 40 H 0.11 3.49 8.03 -2.39 -0.02 3.47 16 41 H 0.40 19.59 7.90 -92.71 -0.73 18.85 16 42 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 2.16 8.07 -2.39 -0.02 2.14 16 45 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 46 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.15 0.93 7.27 -2.39 -0.02 0.91 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 50 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.08 1.42 7.67 -2.39 -0.02 1.40 16 Total: -1.00 -74.82 406.50 -2.15 -76.97 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.19 Total: 35.09 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 7.72 Total: 27.92 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -11.99 Total: -133.76 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -0.09 Total: -51.35 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.82 -2.15 -76.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481465752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.700 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds