Wall clock time and date at job start Tue Mar 31 2020 21:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46883 * 2 1 4 4 C 1.52994 * 109.47413 * 119.99948 * 2 1 3 5 5 N 1.46497 * 109.47379 * 295.00160 * 4 2 1 6 6 C 1.36937 * 120.00005 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00422 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99751 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00465 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46904 * 59.99989 * 10 8 6 12 12 H 1.48502 * 109.47302 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47127 * 300.00297 * 10 8 6 14 14 C 1.53003 * 109.47134 * 240.00303 * 2 1 3 15 15 N 1.46501 * 109.47220 * 64.99830 * 14 2 1 16 16 C 1.34776 * 120.00081 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00166 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99801 * 179.97438 * 16 15 14 19 19 H 1.08998 * 109.47357 * 60.00211 * 18 16 15 20 20 C 1.53001 * 109.47326 * 299.99496 * 18 16 15 21 21 N 1.46504 * 109.47073 * 179.97438 * 18 16 15 22 22 N 1.29024 * 126.43380 * 60.17776 * 21 18 16 23 23 N 1.28737 * 108.80674 * 180.24823 * 22 21 18 24 24 N 1.28840 * 109.39913 * 359.74863 * 23 22 21 25 25 C 1.31075 * 107.99215 * 359.97438 * 24 23 22 26 26 C 1.50699 * 126.66389 * 179.97438 * 25 24 23 27 27 C 1.52997 * 109.47078 * 0.02672 * 26 25 24 28 28 C 1.52992 * 109.46956 * 240.02360 * 26 25 24 29 29 C 1.53006 * 109.46866 * 120.02494 * 26 25 24 30 30 H 1.09003 * 109.47266 * 60.00253 * 1 2 3 31 31 H 1.08998 * 109.46883 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47272 * 299.99411 * 1 2 3 33 33 H 1.09006 * 109.46972 * 55.00130 * 4 2 1 34 34 H 1.08996 * 109.47324 * 174.99844 * 4 2 1 35 35 H 0.96998 * 119.99682 * 0.02562 * 5 4 2 36 36 H 0.96994 * 120.00767 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47076 * 305.00192 * 14 2 1 38 38 H 1.08996 * 109.47189 * 184.99494 * 14 2 1 39 39 H 0.97003 * 119.99980 * 359.97438 * 15 14 2 40 40 H 1.09002 * 109.46991 * 300.00092 * 20 18 16 41 41 H 1.09002 * 109.46730 * 60.00243 * 20 18 16 42 42 H 1.08996 * 109.47431 * 180.02562 * 20 18 16 43 43 H 1.09002 * 109.47153 * 299.99793 * 27 26 25 44 44 H 1.09001 * 109.46832 * 179.97438 * 27 26 25 45 45 H 1.09004 * 109.47261 * 59.99965 * 27 26 25 46 46 H 1.09001 * 109.47066 * 180.02562 * 28 26 25 47 47 H 1.08996 * 109.47747 * 299.99900 * 28 26 25 48 48 H 1.09002 * 109.47103 * 60.00312 * 28 26 25 49 49 H 1.08993 * 109.46955 * 300.00219 * 29 26 25 50 50 H 1.09000 * 109.47050 * 60.00048 * 29 26 25 51 51 H 1.09001 * 109.47002 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0353 2.4423 6 6 2.0012 -0.4209 3.6855 7 1 2.5623 -1.3381 3.7864 8 6 1.6345 0.2963 4.8160 9 7 0.9511 1.4145 4.6931 10 14 2.1107 -0.3256 6.5119 11 1 3.5898 -0.4160 6.6085 12 1 1.6032 0.6136 7.5441 13 1 1.5174 -1.6691 6.7311 14 6 2.0400 -0.7212 -1.2493 15 7 1.6524 0.0354 -2.4424 16 6 1.9955 -0.4135 -3.6660 17 8 2.6255 -1.4435 -3.7794 18 6 1.5963 0.3646 -4.8933 19 1 2.0309 1.3632 -4.8478 20 6 0.0714 0.4742 -4.9541 21 7 2.0847 -0.3259 -6.0896 22 7 1.7768 -1.5217 -6.4635 23 7 2.4015 -1.7884 -7.5571 24 7 3.1123 -0.7710 -7.9029 25 6 2.9361 0.1694 -7.0070 26 6 3.5695 1.5368 -7.0011 27 6 4.4765 1.6839 -8.2245 28 6 4.3993 1.7089 -5.7274 29 6 2.4757 2.6057 -7.0456 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 3.1263 -0.7994 1.2055 35 1 1.1483 0.8590 2.3517 36 1 0.6945 1.9154 5.4831 37 1 1.6054 -1.7197 -1.2953 38 1 3.1263 -0.7993 -1.2057 39 1 1.1482 0.8591 -2.3518 40 1 -0.3631 -0.5244 -4.9997 41 1 -0.2916 0.9882 -4.0641 42 1 -0.2173 1.0366 -5.8420 43 1 5.2557 0.9224 -8.1928 44 1 4.9342 2.6731 -8.2205 45 1 3.8852 1.5612 -9.1320 46 1 4.8571 2.6981 -5.7229 47 1 3.7532 1.6041 -4.8558 48 1 5.1785 0.9474 -5.6957 49 1 1.8845 2.4829 -7.9531 50 1 1.8295 2.5008 -6.1741 51 1 2.9338 3.5947 -7.0409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482106516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:00 Heat of formation + Delta-G solvation = 78.438294 kcal Electronic energy + Delta-G solvation = -30135.866640 eV Core-core repulsion = 26108.202702 eV Total energy + Delta-G solvation = -4027.663938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.47301 -40.37003 -37.97480 -37.15352 -36.05478 -34.65681 -32.95540 -32.10523 -31.42088 -30.06663 -28.05593 -28.01825 -26.85996 -26.01070 -25.33830 -24.16746 -23.44569 -22.36907 -20.93720 -20.52609 -19.98851 -18.30322 -17.62934 -17.14486 -16.79909 -16.21063 -16.18889 -15.58203 -15.20013 -14.73542 -14.59994 -14.49815 -14.18918 -13.82475 -13.69475 -13.38463 -13.21424 -13.12498 -13.05433 -12.93043 -12.76713 -12.60620 -12.44941 -12.32912 -12.29353 -12.16159 -12.03153 -11.71827 -11.51198 -11.29782 -11.17323 -11.16061 -10.99980 -10.80519 -10.68986 -10.56798 -10.35421 -10.16814 -10.02557 -9.74022 -9.36887 -8.93679 -6.99657 -5.83294 -3.12060 0.98574 1.47988 2.05525 2.07744 2.67275 3.36822 3.40532 3.45053 3.45900 3.67759 3.85688 3.97184 4.05374 4.20943 4.40956 4.52898 4.59072 4.73092 4.85147 4.86454 4.90133 5.05589 5.06498 5.10499 5.12349 5.21898 5.22446 5.30538 5.34140 5.41699 5.43764 5.51015 5.53761 5.62362 5.65195 5.78558 5.81123 5.81947 5.86521 5.93833 6.07925 6.19502 6.29574 6.54111 6.65958 6.75195 7.03815 7.64424 7.71557 8.35751 8.44701 9.47215 10.03193 10.37954 11.39521 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.002005 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.210790 B =13960.388782 C =14234.812259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.078 0.922 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.713 5.713 16 C 0.503 3.497 17 O -0.510 6.510 18 C 0.116 3.884 19 H 0.145 0.855 20 C -0.163 4.163 21 N -0.289 5.289 22 N -0.066 5.066 23 N -0.080 5.080 24 N -0.300 5.300 25 C 0.194 3.806 26 C 0.013 3.987 27 C -0.132 4.132 28 C -0.152 4.152 29 C -0.151 4.151 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.402 0.598 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 7.339 -25.692 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.003 3.997 15 N -0.366 5.366 16 C 0.285 3.715 17 O -0.384 6.384 18 C 0.009 3.991 19 H 0.162 0.838 20 C -0.222 4.222 21 N -0.091 5.091 22 N -0.051 5.051 23 N -0.074 5.074 24 N -0.148 5.148 25 C -0.084 4.084 26 C 0.009 3.991 27 C -0.189 4.189 28 C -0.210 4.210 29 C -0.209 4.209 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.238 0.762 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.968 5.130 -26.191 26.707 hybrid contribution -0.130 1.094 1.646 1.981 sum 0.838 6.224 -24.545 25.336 Atomic orbital electron populations 1.21807 0.94510 1.02123 1.01533 1.21562 0.96821 1.00511 0.94011 0.90382 1.20567 0.96658 0.94262 0.85306 1.42310 1.66970 1.27669 1.00541 1.19183 1.28893 1.05485 0.83620 0.91197 1.24734 1.00927 0.97367 0.97892 1.69634 1.43460 1.16544 1.28687 0.86253 0.78051 0.77748 0.84048 1.21235 1.21668 1.21227 1.21535 1.00447 0.95404 0.82264 1.45935 1.57311 1.28019 1.05350 1.20041 0.80905 0.86214 0.84339 1.90846 1.38476 1.23089 1.85948 1.21960 0.99132 0.96704 0.81266 0.83797 1.22202 0.89413 1.05604 1.04933 1.48013 1.31282 1.10824 1.18935 1.78942 1.19769 0.96781 1.09639 1.78644 1.05739 1.18048 1.04946 1.74975 1.19199 0.97557 1.23027 1.26035 0.94707 0.99778 0.87909 1.19275 0.95685 0.84878 0.99217 1.21750 0.99106 1.02616 0.95468 1.22097 1.00193 1.04015 0.94663 1.22110 0.97654 0.98466 1.02707 0.93981 0.92670 0.90965 0.95928 0.96108 0.78207 0.93438 0.90842 0.90980 0.76234 0.89562 0.88549 0.90061 0.91320 0.91124 0.91342 0.89888 0.92688 0.91264 0.91347 0.92389 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.94 37.16 0.33 -1.50 16 2 C -0.11 -1.48 2.46 -90.62 -0.22 -1.70 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.16 2.98 5.65 -4.05 -0.02 2.96 16 5 N -0.73 -17.47 5.33 -59.91 -0.32 -17.79 16 6 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 10 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.13 1.51 5.07 -4.04 -0.02 1.48 16 15 N -0.71 -6.43 5.18 -60.29 -0.31 -6.74 16 16 C 0.50 5.41 7.19 -10.99 -0.08 5.33 16 17 O -0.51 -8.07 15.89 5.56 0.09 -7.98 16 18 C 0.12 0.88 2.25 -69.08 -0.16 0.72 16 19 H 0.14 0.63 3.73 -51.93 -0.19 0.44 16 20 C -0.16 -0.85 9.30 37.16 0.35 -0.51 16 21 N -0.29 -3.16 2.76 -52.93 -0.15 -3.30 16 22 N -0.07 -0.95 12.42 60.35 0.75 -0.20 16 23 N -0.08 -1.24 13.43 60.35 0.81 -0.43 16 24 N -0.30 -4.03 11.71 32.70 0.38 -3.65 16 25 C 0.19 2.01 6.40 -155.43 -1.00 1.02 16 26 C 0.01 0.08 0.75 -155.66 -0.12 -0.03 16 27 C -0.13 -0.76 8.00 37.16 0.30 -0.46 16 28 C -0.15 -0.87 8.31 37.15 0.31 -0.56 16 29 C -0.15 -0.57 8.31 37.16 0.31 -0.26 16 30 H 0.04 0.40 7.18 -51.93 -0.37 0.02 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.13 7.18 -51.93 -0.37 0.75 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.38 9.50 6.85 -40.82 -0.28 9.22 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.40 2.40 7.07 -40.82 -0.29 2.11 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.26 7.56 -51.93 -0.39 -0.14 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 0.31 5.55 -51.93 -0.29 0.02 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.06 0.16 5.61 -51.93 -0.29 -0.13 16 51 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 407.77 15.07 6.15 6.15 Total: -1.00 -36.12 407.77 -5.53 -41.65 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.37 Total: 2.64 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.27 Total: -0.68 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 1.89 Total: -58.75 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.98 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.12 -5.53 -41.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482106516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.089 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds