Wall clock time and date at job start Tue Mar 31 2020 21:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.47508 * 304.99882 * 8 7 6 10 10 C 1.52992 * 109.47225 * 64.99918 * 8 7 6 11 11 C 1.53001 * 109.47200 * 184.99961 * 8 7 6 12 12 N 1.46507 * 109.47141 * 174.99952 * 11 8 7 13 13 C 1.36932 * 120.00060 * 179.97438 * 12 11 8 14 14 H 1.07999 * 120.00095 * 0.02562 * 13 12 11 15 15 C 1.38812 * 120.00309 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99752 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00472 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46630 * 90.00348 * 17 15 13 19 19 H 1.48497 * 109.47355 * 210.00113 * 17 15 13 20 20 H 1.48495 * 109.47059 * 330.00671 * 17 15 13 21 21 N 1.46499 * 109.46879 * 119.99323 * 2 1 3 22 22 N 1.29025 * 126.43682 * 60.03061 * 21 2 1 23 23 N 1.28737 * 108.80837 * 179.97438 * 22 21 2 24 24 N 1.28844 * 109.39839 * 359.97438 * 23 22 21 25 25 C 1.31075 * 107.98929 * 359.75252 * 24 23 22 26 26 C 1.50704 * 126.65719 * 180.24528 * 25 24 23 27 27 C 1.52997 * 109.46687 * 240.16899 * 26 25 24 28 28 C 1.52994 * 109.47363 * 0.16953 * 26 25 24 29 29 C 1.52998 * 109.46801 * 120.17486 * 26 25 24 30 30 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 31 31 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 33 33 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 34 34 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 35 35 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 36 36 H 1.08998 * 109.47345 * 299.99889 * 10 8 7 37 37 H 1.09002 * 109.47301 * 60.00195 * 10 8 7 38 38 H 1.09001 * 109.47633 * 180.02562 * 10 8 7 39 39 H 1.08996 * 109.47431 * 294.99845 * 11 8 7 40 40 H 1.09001 * 109.47356 * 55.00657 * 11 8 7 41 41 H 0.97003 * 120.00137 * 359.97438 * 12 11 8 42 42 H 0.96998 * 120.00372 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.47285 * 60.00673 * 27 26 25 44 44 H 1.09004 * 109.47203 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.47153 * 299.99941 * 27 26 25 46 46 H 1.09000 * 109.46900 * 60.00310 * 28 26 25 47 47 H 1.08998 * 109.46979 * 179.97438 * 28 26 25 48 48 H 1.09005 * 109.47029 * 300.00024 * 28 26 25 49 49 H 1.09001 * 109.47795 * 59.99596 * 29 26 25 50 50 H 1.08998 * 109.47103 * 179.97438 * 29 26 25 51 51 H 1.09000 * 109.47211 * 299.99536 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.6990 -0.2100 -4.8998 9 1 0.6124 -0.1327 -4.8602 10 6 2.3081 1.1922 -4.9584 11 6 2.1090 -0.9967 -6.1464 12 7 1.5242 -0.3693 -7.3341 13 6 1.7557 -0.9021 -8.5741 14 1 2.3692 -1.7850 -8.6765 15 6 1.2012 -0.3080 -9.6995 16 7 0.4531 0.7677 -9.5746 17 14 1.5176 -1.0343 -11.3911 18 1 0.4651 -2.0338 -11.7054 19 1 1.4917 0.0481 -12.4074 20 1 2.8475 -1.6949 -11.4053 21 7 2.0182 -0.6905 1.1963 22 7 1.7848 -1.9169 1.5222 23 7 2.3778 -2.1703 2.6364 24 7 2.9983 -1.1159 3.0404 25 6 2.8003 -0.1667 2.1584 26 6 3.3401 1.2393 2.2132 27 6 2.1760 2.2319 2.2349 28 6 4.1824 1.4133 3.4785 29 6 4.2097 1.4999 0.9817 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1537 0.5418 -2.5435 34 1 3.2948 -0.9335 -3.6463 35 1 1.8419 -1.9618 -3.6548 36 1 2.0160 1.7527 -4.0704 37 1 3.3947 1.1150 -4.9982 38 1 1.9474 1.7082 -5.8482 39 1 3.1955 -0.9982 -6.2341 40 1 1.7498 -2.0224 -6.0633 41 1 0.9728 0.4235 -7.2422 42 1 0.0658 1.1831 -10.3610 43 1 1.5564 2.0462 3.1123 44 1 2.5663 3.2489 2.2741 45 1 1.5759 2.1079 1.3334 46 1 5.0117 0.7061 3.4630 47 1 4.5731 2.4301 3.5178 48 1 3.5627 1.2275 4.3559 49 1 3.6096 1.3759 0.0802 50 1 4.5997 2.5170 1.0210 51 1 5.0390 0.7927 0.9661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482106517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:03 Heat of formation + Delta-G solvation = 78.373798 kcal Electronic energy + Delta-G solvation = -30149.825930 eV Core-core repulsion = 26122.159195 eV Total energy + Delta-G solvation = -4027.666735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.47350 -40.36909 -37.97928 -37.15802 -36.05361 -34.65733 -32.95999 -32.10457 -31.42052 -30.06483 -28.06063 -28.02631 -26.88558 -25.98959 -25.34349 -24.16898 -23.44462 -22.37291 -20.93727 -20.51865 -20.01315 -18.30328 -17.62820 -17.14667 -16.77246 -16.22346 -16.08812 -15.84418 -14.94560 -14.81638 -14.58481 -14.53291 -14.21793 -13.83267 -13.69783 -13.33925 -13.22842 -13.15778 -13.03936 -12.93784 -12.72652 -12.63553 -12.46340 -12.33702 -12.30785 -12.16746 -12.03411 -11.72474 -11.51409 -11.29847 -11.17985 -11.16371 -11.00579 -10.81967 -10.68721 -10.57226 -10.35010 -10.15009 -10.01981 -9.74402 -9.36943 -8.94147 -6.99597 -5.83491 -3.12146 0.98500 1.48116 2.05549 2.07637 2.67053 3.36414 3.39857 3.45501 3.46723 3.67561 3.85414 3.97231 4.05176 4.20336 4.40393 4.52841 4.58966 4.73553 4.84438 4.86946 4.90067 5.05158 5.05935 5.09667 5.12101 5.21239 5.22016 5.30318 5.33676 5.41859 5.43146 5.50912 5.53621 5.61541 5.63769 5.78451 5.80629 5.81355 5.86284 5.93301 6.07447 6.18960 6.28381 6.53292 6.66021 6.74757 7.03748 7.64898 7.71494 8.35564 8.44667 9.47126 10.03089 10.37826 11.39402 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.001999 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.834381 B =14004.283296 C =14381.802822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 H 0.145 0.855 4 C 0.503 3.497 5 O -0.510 6.510 6 N -0.713 5.713 7 C 0.127 3.873 8 C -0.110 4.110 9 H 0.078 0.922 10 C -0.142 4.142 11 C 0.160 3.840 12 N -0.730 5.730 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 N -0.289 5.289 22 N -0.066 5.066 23 N -0.081 5.081 24 N -0.300 5.300 25 C 0.194 3.806 26 C 0.013 3.987 27 C -0.152 4.152 28 C -0.132 4.132 29 C -0.151 4.151 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.402 0.598 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 8.642 25.896 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 H 0.162 0.838 4 C 0.285 3.715 5 O -0.384 6.384 6 N -0.366 5.366 7 C 0.004 3.996 8 C -0.129 4.129 9 H 0.097 0.903 10 C -0.200 4.200 11 C 0.032 3.968 12 N -0.375 5.375 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 N -0.091 5.091 22 N -0.051 5.051 23 N -0.074 5.074 24 N -0.148 5.148 25 C -0.085 4.085 26 C 0.010 3.990 27 C -0.210 4.210 28 C -0.189 4.189 29 C -0.209 4.209 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.238 0.762 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.101 0.899 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.548 6.434 26.356 27.249 hybrid contribution -0.332 1.012 -1.623 1.941 sum 2.216 7.445 24.733 25.925 Atomic orbital electron populations 1.22203 0.89174 1.05858 1.04948 1.21962 0.98600 0.97180 0.81312 0.83804 1.20048 0.81691 0.85387 0.84388 1.90848 1.36526 1.24897 1.86086 1.45933 1.53327 1.32173 1.05180 1.21531 0.99561 0.96375 0.82176 1.21566 1.01067 0.96270 0.94038 0.90329 1.21804 1.00961 0.95632 1.01553 1.20571 0.96314 0.94519 0.85394 1.42320 1.60538 1.33481 1.01165 1.19228 1.25567 1.08307 0.83991 0.91142 1.24737 1.00326 0.97969 0.97941 1.69649 1.37858 1.21986 1.28811 0.86176 0.77803 0.77933 0.84205 1.21684 1.21749 1.20730 1.48020 1.34092 1.08828 1.18112 1.78948 1.19312 0.96108 1.10718 1.78647 1.07473 1.17887 1.03371 1.74976 1.19623 0.96631 1.23538 1.26032 0.95585 0.99677 0.87157 1.19272 0.96327 0.84160 0.99285 1.22115 0.96929 0.99255 1.02662 1.21749 0.99811 1.02481 0.94898 1.22091 0.99940 1.03769 0.95131 0.88524 0.89546 0.90057 0.76233 0.90972 0.90850 0.94002 0.92724 0.90951 0.95952 0.96056 0.78210 0.93498 0.91336 0.89941 0.92383 0.91329 0.91131 0.91329 0.92696 0.89912 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.31 37.16 0.35 -0.53 16 2 C 0.12 0.88 2.25 -69.08 -0.16 0.72 16 3 H 0.14 0.62 3.73 -51.92 -0.19 0.43 16 4 C 0.50 5.41 7.18 -10.98 -0.08 5.33 16 5 O -0.51 -8.06 15.88 5.55 0.09 -7.97 16 6 N -0.71 -6.42 5.18 -60.30 -0.31 -6.73 16 7 C 0.13 1.50 5.06 -4.04 -0.02 1.48 16 8 C -0.11 -1.48 2.46 -90.62 -0.22 -1.71 16 9 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 10 C -0.14 -1.79 8.94 37.15 0.33 -1.46 16 11 C 0.16 2.98 5.65 -4.04 -0.02 2.96 16 12 N -0.73 -17.48 5.33 -59.91 -0.32 -17.80 16 13 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 17 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 N -0.29 -3.16 2.76 -52.93 -0.15 -3.30 16 22 N -0.07 -0.95 12.42 60.35 0.75 -0.20 16 23 N -0.08 -1.24 13.43 60.35 0.81 -0.43 16 24 N -0.30 -4.02 11.71 32.70 0.38 -3.64 16 25 C 0.19 2.00 6.40 -155.43 -1.00 1.01 16 26 C 0.01 0.08 0.75 -155.66 -0.12 -0.04 16 27 C -0.15 -0.56 8.31 37.16 0.31 -0.25 16 28 C -0.13 -0.74 8.00 37.15 0.30 -0.45 16 29 C -0.15 -0.84 8.31 37.16 0.31 -0.54 16 30 H 0.10 0.27 7.57 -51.93 -0.39 -0.12 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 2.39 7.08 -40.82 -0.29 2.10 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.38 7.18 -51.93 -0.37 0.01 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 9.50 6.85 -40.82 -0.28 9.22 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.06 0.16 5.57 -51.93 -0.29 -0.13 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.05 0.30 5.59 -51.93 -0.29 0.01 16 50 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -36.18 407.78 -5.54 -41.71 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.37 Total: 2.50 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.27 Total: -0.63 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 1.89 Total: -58.75 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.18 -5.54 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482106517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.085 kcal (2) G-P(sol) polarization free energy of solvation -36.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds