Wall clock time and date at job start Tue Mar 31 2020 21:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.47508 * 304.99882 * 8 7 6 10 10 C 1.52992 * 109.47225 * 64.99918 * 8 7 6 11 11 C 1.53001 * 109.47200 * 184.99961 * 8 7 6 12 12 N 1.46507 * 109.47141 * 174.99952 * 11 8 7 13 13 C 1.36932 * 120.00060 * 179.97438 * 12 11 8 14 14 H 1.07999 * 120.00095 * 0.02562 * 13 12 11 15 15 C 1.38812 * 120.00309 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99752 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00472 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46630 * 90.00348 * 17 15 13 19 19 H 1.48497 * 109.47355 * 210.00113 * 17 15 13 20 20 H 1.48495 * 109.47059 * 330.00671 * 17 15 13 21 21 N 1.46499 * 109.46879 * 119.99323 * 2 1 3 22 22 N 1.29025 * 126.43682 * 60.03061 * 21 2 1 23 23 N 1.28737 * 108.80837 * 179.97438 * 22 21 2 24 24 N 1.28844 * 109.39839 * 359.97438 * 23 22 21 25 25 C 1.31075 * 107.98929 * 359.75252 * 24 23 22 26 26 C 1.50704 * 126.65719 * 180.24528 * 25 24 23 27 27 C 1.52997 * 109.46687 * 240.16899 * 26 25 24 28 28 C 1.52994 * 109.47363 * 0.16953 * 26 25 24 29 29 C 1.52998 * 109.46801 * 120.17486 * 26 25 24 30 30 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 31 31 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 33 33 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 34 34 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 35 35 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 36 36 H 1.08998 * 109.47345 * 299.99889 * 10 8 7 37 37 H 1.09002 * 109.47301 * 60.00195 * 10 8 7 38 38 H 1.09001 * 109.47633 * 180.02562 * 10 8 7 39 39 H 1.08996 * 109.47431 * 294.99845 * 11 8 7 40 40 H 1.09001 * 109.47356 * 55.00657 * 11 8 7 41 41 H 0.97003 * 120.00137 * 359.97438 * 12 11 8 42 42 H 0.96998 * 120.00372 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.47285 * 60.00673 * 27 26 25 44 44 H 1.09004 * 109.47203 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.47153 * 299.99941 * 27 26 25 46 46 H 1.09000 * 109.46900 * 60.00310 * 28 26 25 47 47 H 1.08998 * 109.46979 * 179.97438 * 28 26 25 48 48 H 1.09005 * 109.47029 * 300.00024 * 28 26 25 49 49 H 1.09001 * 109.47795 * 59.99596 * 29 26 25 50 50 H 1.08998 * 109.47103 * 179.97438 * 29 26 25 51 51 H 1.09000 * 109.47211 * 299.99536 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.6990 -0.2100 -4.8998 9 1 0.6124 -0.1327 -4.8602 10 6 2.3081 1.1922 -4.9584 11 6 2.1090 -0.9967 -6.1464 12 7 1.5242 -0.3693 -7.3341 13 6 1.7557 -0.9021 -8.5741 14 1 2.3692 -1.7850 -8.6765 15 6 1.2012 -0.3080 -9.6995 16 7 0.4531 0.7677 -9.5746 17 14 1.5176 -1.0343 -11.3911 18 1 0.4651 -2.0338 -11.7054 19 1 1.4917 0.0481 -12.4074 20 1 2.8475 -1.6949 -11.4053 21 7 2.0182 -0.6905 1.1963 22 7 1.7848 -1.9169 1.5222 23 7 2.3778 -2.1703 2.6364 24 7 2.9983 -1.1159 3.0404 25 6 2.8003 -0.1667 2.1584 26 6 3.3401 1.2393 2.2132 27 6 2.1760 2.2319 2.2349 28 6 4.1824 1.4133 3.4785 29 6 4.2097 1.4999 0.9817 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1537 0.5418 -2.5435 34 1 3.2948 -0.9335 -3.6463 35 1 1.8419 -1.9618 -3.6548 36 1 2.0160 1.7527 -4.0704 37 1 3.3947 1.1150 -4.9982 38 1 1.9474 1.7082 -5.8482 39 1 3.1955 -0.9982 -6.2341 40 1 1.7498 -2.0224 -6.0633 41 1 0.9728 0.4235 -7.2422 42 1 0.0658 1.1831 -10.3610 43 1 1.5564 2.0462 3.1123 44 1 2.5663 3.2489 2.2741 45 1 1.5759 2.1079 1.3334 46 1 5.0117 0.7061 3.4630 47 1 4.5731 2.4301 3.5178 48 1 3.5627 1.2275 4.3559 49 1 3.6096 1.3759 0.0802 50 1 4.5997 2.5170 1.0210 51 1 5.0390 0.7927 0.9661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482106517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:02 Heat of formation + Delta-G solvation = 51.725783 kcal Electronic energy + Delta-G solvation = -30150.981475 eV Core-core repulsion = 26122.159195 eV Total energy + Delta-G solvation = -4028.822280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.36755 -41.27043 -38.60562 -38.28723 -36.89926 -36.09683 -34.36257 -33.09639 -32.36666 -31.63968 -28.51380 -28.33536 -27.85707 -27.25983 -26.42198 -24.98008 -24.75394 -23.72692 -21.81322 -21.37271 -20.97675 -19.43927 -18.81999 -18.39801 -17.68003 -17.09820 -16.93815 -16.70396 -16.41977 -15.77484 -15.52578 -15.47882 -15.20013 -15.02412 -14.72176 -14.46353 -14.26335 -13.91489 -13.80196 -13.64540 -13.58362 -13.51333 -13.26822 -13.05061 -12.96289 -12.93264 -12.81884 -12.72374 -12.70253 -12.31479 -12.19895 -12.17799 -12.16936 -12.04228 -12.00506 -11.79566 -11.71124 -11.66240 -11.22777 -10.95482 -10.93953 -10.29496 -8.99126 -7.96129 -5.23670 0.12629 0.75915 1.12116 1.22756 1.47921 1.48510 1.56937 1.84338 2.55807 2.75662 3.01605 3.32370 3.36080 3.37800 3.44583 3.69373 3.79393 3.93721 3.95825 4.03161 4.06470 4.24638 4.34336 4.43045 4.44493 4.53522 4.55382 4.62237 4.67928 4.69758 4.74635 4.79548 4.87399 4.92996 4.94347 4.94771 4.99330 5.06273 5.06872 5.11791 5.19012 5.23581 5.30069 5.38277 5.38635 5.49743 5.51271 6.25758 6.28233 6.94011 7.34460 7.49613 8.09387 8.33982 9.27015 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.001999 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.834381 B =14004.283296 C =14381.802822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 H 0.185 0.815 4 C 0.504 3.496 5 O -0.566 6.566 6 N -0.694 5.694 7 C 0.139 3.861 8 C -0.093 4.093 9 H 0.085 0.915 10 C -0.137 4.137 11 C 0.154 3.846 12 N -0.740 5.740 13 C -0.246 4.246 14 H 0.071 0.929 15 C -0.072 4.072 16 N -0.965 5.965 17 Si 0.969 3.031 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.273 1.273 21 N -0.286 5.286 22 N -0.092 5.092 23 N -0.115 5.115 24 N -0.328 5.328 25 C 0.203 3.797 26 C 0.013 3.987 27 C -0.151 4.151 28 C -0.131 4.131 29 C -0.151 4.151 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.422 0.578 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.019 0.981 40 H 0.016 0.984 41 H 0.378 0.622 42 H 0.252 0.748 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.100 0.900 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.113 0.887 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 11.332 26.326 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.011 3.989 3 H 0.202 0.798 4 C 0.288 3.712 5 O -0.444 6.444 6 N -0.348 5.348 7 C 0.015 3.985 8 C -0.112 4.112 9 H 0.103 0.897 10 C -0.194 4.194 11 C 0.027 3.973 12 N -0.383 5.383 13 C -0.378 4.378 14 H 0.089 0.911 15 C -0.264 4.264 16 N -0.616 5.616 17 Si 0.799 3.201 18 H -0.215 1.215 19 H -0.220 1.220 20 H -0.198 1.198 21 N -0.088 5.088 22 N -0.078 5.078 23 N -0.108 5.108 24 N -0.176 5.176 25 C -0.075 4.075 26 C 0.009 3.991 27 C -0.208 4.208 28 C -0.189 4.189 29 C -0.209 4.209 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.261 0.739 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.211 0.789 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.119 0.881 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.132 0.868 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.219 9.139 26.800 28.402 hybrid contribution -0.182 0.181 -1.728 1.747 sum 2.037 9.320 25.071 26.825 Atomic orbital electron populations 1.22324 0.87042 1.05163 1.07579 1.22383 1.00163 0.97850 0.78513 0.79848 1.20564 0.80596 0.84656 0.85418 1.90840 1.39142 1.27491 1.86895 1.45660 1.52916 1.32324 1.03889 1.21185 0.99128 0.95712 0.82517 1.21330 1.01457 0.96245 0.92154 0.89674 1.21756 1.00549 0.94874 1.02255 1.20735 0.95738 0.94779 0.86017 1.42470 1.60622 1.33415 1.01799 1.19587 1.24696 1.08027 0.85530 0.91123 1.25489 1.00893 0.98734 1.01327 1.69779 1.39151 1.23279 1.29354 0.85202 0.77890 0.77030 0.80012 1.21538 1.21990 1.19785 1.48257 1.33750 1.07972 1.18841 1.78848 1.20138 0.98072 1.10773 1.78596 1.08732 1.19266 1.04253 1.74885 1.20494 0.97100 1.25159 1.26889 0.93949 1.00699 0.85938 1.19620 0.97532 0.82145 0.99811 1.22176 0.95853 0.99613 1.03198 1.21774 0.98991 1.03706 0.94435 1.22138 0.99099 1.04956 0.94725 0.85170 0.91939 0.88131 0.73898 0.91572 0.92286 0.89621 0.93084 0.93860 0.96269 0.96600 0.78887 0.93925 0.91812 0.87178 0.90949 0.93335 0.88114 0.92160 0.92297 0.86799 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.31 71.98 0.67 -0.55 16 2 C 0.12 1.44 2.25 44.24 0.10 1.54 16 3 H 0.18 0.74 3.73 -2.38 -0.01 0.73 16 4 C 0.50 9.96 7.18 87.66 0.63 10.59 16 5 O -0.57 -17.96 15.88 -3.04 -0.05 -18.01 16 6 N -0.69 -10.56 5.18 -463.07 -2.40 -12.95 16 7 C 0.14 3.09 5.06 86.38 0.44 3.53 16 8 C -0.09 -2.34 2.46 -10.80 -0.03 -2.37 16 9 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 10 C -0.14 -3.13 8.94 71.98 0.64 -2.48 16 11 C 0.15 5.70 5.65 86.38 0.49 6.18 16 12 N -0.74 -35.42 5.33 -343.45 -1.83 -37.25 16 13 C -0.25 -13.44 9.99 84.03 0.84 -12.60 16 14 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 15 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 16 N -0.97 -56.81 13.06 21.65 0.28 -56.53 16 17 Si 0.97 45.26 29.55 68.60 2.03 47.28 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 N -0.29 -6.02 2.76 -321.36 -0.89 -6.91 16 22 N -0.09 -2.75 12.42 37.02 0.46 -2.29 16 23 N -0.12 -3.73 13.43 37.01 0.50 -3.23 16 24 N -0.33 -9.09 11.71 -50.45 -0.59 -9.68 16 25 C 0.20 4.06 6.40 138.13 0.88 4.94 16 26 C 0.01 0.12 0.75 -52.93 -0.04 0.08 16 27 C -0.15 -0.47 8.31 71.98 0.60 0.13 16 28 C -0.13 -1.27 8.00 71.98 0.58 -0.69 16 29 C -0.15 -1.24 8.31 71.98 0.60 -0.64 16 30 H 0.13 0.09 7.57 -2.38 -0.02 0.07 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 33 H 0.42 3.10 7.08 -92.71 -0.66 2.44 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.19 7.18 -2.39 -0.02 1.17 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.27 7.18 -2.39 -0.02 1.25 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.38 18.78 6.85 -92.71 -0.64 18.14 16 42 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.07 0.01 5.57 -2.39 -0.01 0.00 16 46 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.06 0.42 5.59 -2.39 -0.01 0.41 16 50 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 51 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -83.57 407.78 4.03 -79.54 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -0.34 Total: 15.90 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 6.86 Total: 4.12 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -4.47 Total: -128.84 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.05 Total: -18.01 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -83.57 4.03 -79.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482106517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.267 kcal (2) G-P(sol) polarization free energy of solvation -83.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds