Wall clock time and date at job start Tue Mar 31 2020 20:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00285 * 2 1 4 4 C 1.46899 * 110.99952 * 123.95720 * 2 1 3 5 5 C 1.50703 * 112.85069 * 302.20690 * 4 2 1 6 6 O 1.21284 * 119.99775 * 350.74843 * 5 4 2 7 7 N 1.34771 * 120.00222 * 170.74071 * 5 4 2 8 8 C 1.46494 * 120.00019 * 175.04081 * 7 5 4 9 9 C 1.52998 * 109.47229 * 184.90021 * 8 7 5 10 10 H 1.09002 * 112.95948 * 53.03758 * 9 8 7 11 11 C 1.53936 * 113.76212 * 184.68408 * 9 8 7 12 12 C 1.53932 * 86.34471 * 138.14848 * 11 9 8 13 13 N 1.47962 * 86.17901 * 336.27966 * 12 11 9 14 14 C 1.46899 * 110.99988 * 137.57950 * 13 12 11 15 15 C 1.50703 * 109.46812 * 76.36032 * 14 13 12 16 16 O 1.21287 * 120.00390 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99748 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99828 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00407 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00076 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99726 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47105 * 90.00153 * 22 20 18 24 24 H 1.48497 * 109.46788 * 209.99916 * 22 20 18 25 25 H 1.48497 * 109.47028 * 330.00032 * 22 20 18 26 26 C 1.53778 * 113.69190 * 73.47910 * 4 2 1 27 27 C 1.53781 * 87.08279 * 89.12900 * 26 4 2 28 28 C 1.53783 * 113.61326 * 171.01738 * 4 2 1 29 29 H 1.08994 * 109.47241 * 302.54087 * 1 2 3 30 30 H 1.09002 * 109.46788 * 62.54508 * 1 2 3 31 31 H 1.09004 * 109.46799 * 182.53901 * 1 2 3 32 32 H 1.08995 * 109.47851 * 183.95132 * 3 2 1 33 33 H 1.08998 * 109.46935 * 303.95964 * 3 2 1 34 34 H 1.09002 * 109.46561 * 63.95158 * 3 2 1 35 35 H 0.97003 * 119.99753 * 355.04538 * 7 5 4 36 36 H 1.09000 * 109.47457 * 64.90142 * 8 7 5 37 37 H 1.08998 * 109.47331 * 304.89950 * 8 7 5 38 38 H 1.09005 * 113.73271 * 252.50917 * 11 9 8 39 39 H 1.09003 * 113.73509 * 23.68390 * 11 9 8 40 40 H 1.09004 * 113.75943 * 90.59632 * 12 11 9 41 41 H 1.08995 * 113.76011 * 221.85472 * 12 11 9 42 42 H 1.09003 * 109.47277 * 196.36171 * 14 13 12 43 43 H 1.09002 * 109.47566 * 316.36304 * 14 13 12 44 44 H 0.96997 * 120.00245 * 0.02562 * 17 15 14 45 45 H 0.97000 * 119.99700 * 179.97438 * 21 20 18 46 46 H 1.08999 * 113.61316 * 203.67165 * 26 4 2 47 47 H 1.09002 * 113.61623 * 334.57915 * 26 4 2 48 48 H 1.09007 * 113.61175 * 270.88332 * 27 26 4 49 49 H 1.08991 * 113.61594 * 139.98073 * 27 26 4 50 50 H 1.09002 * 113.61955 * 25.34137 * 28 4 2 51 51 H 1.09001 * 113.61403 * 156.16587 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.5141 -0.2447 2.4671 6 8 0.9112 0.8061 2.5241 7 7 1.7535 -0.9462 3.5927 8 6 1.3826 -0.3891 4.8958 9 6 1.8695 -1.3219 6.0065 10 1 2.9309 -1.5576 5.9291 11 6 1.4319 -0.8880 7.4171 12 6 1.1460 -2.3775 7.6796 13 7 1.0090 -2.5079 6.2121 14 6 1.6693 -3.7276 5.7280 15 6 0.8111 -4.9242 6.0483 16 8 -0.2462 -4.7758 6.6237 17 7 1.2186 -6.1596 5.6954 18 6 0.4382 -7.2483 5.9873 19 1 -0.5033 -7.1161 6.4996 20 6 0.8580 -8.5218 5.6230 21 7 2.0034 -8.6826 4.9991 22 14 -0.2057 -10.0051 6.0200 23 1 -1.1391 -10.2607 4.8936 24 1 0.6598 -11.1942 6.2251 25 1 -0.9835 -9.7397 7.2568 26 6 1.8430 -2.2882 0.9810 27 6 3.2151 -2.2751 0.2866 28 6 3.5155 -0.9912 1.0780 29 1 -0.3633 0.5527 0.8663 30 1 -0.3633 0.4738 -0.9120 31 1 -0.3633 -1.0267 0.0455 32 1 3.0828 1.3433 -0.0708 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 2.1715 -1.8200 3.5399 36 1 0.2987 -0.2902 4.9535 37 1 1.8438 0.5911 5.0165 38 1 2.2428 -0.4835 8.0230 39 1 0.5408 -0.2602 7.4264 40 1 1.9958 -2.9220 8.0914 41 1 0.2204 -2.5573 8.2264 42 1 1.8110 -3.6604 4.6493 43 1 2.6382 -3.8343 6.2158 44 1 2.0643 -6.2784 5.2356 45 1 2.2966 -9.5717 4.7452 46 1 1.8386 -2.8264 1.9288 47 1 1.0238 -2.5797 0.3237 48 1 3.1577 -2.1205 -0.7909 49 1 3.8514 -3.1162 0.5612 50 1 4.0465 -0.2356 0.4989 51 1 3.9685 -1.1733 2.0525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483655007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:20 Heat of formation + Delta-G solvation = 1.799752 kcal Electronic energy + Delta-G solvation = -30737.588912 eV Core-core repulsion = 26674.308926 eV Total energy + Delta-G solvation = -4063.279986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14392 -40.07708 -38.02115 -37.67067 -35.65581 -34.13938 -33.90430 -31.39487 -30.61769 -28.85319 -28.09612 -26.41008 -25.80443 -25.44982 -23.73743 -23.68930 -22.55461 -21.22075 -19.81436 -19.31328 -18.87279 -17.94580 -17.66951 -16.53108 -16.21355 -15.99599 -15.46372 -15.28797 -15.26147 -14.83594 -14.68745 -14.50748 -14.15121 -14.00953 -13.84546 -13.72935 -13.56244 -12.76311 -12.66950 -12.37960 -12.19945 -12.11971 -11.98947 -11.90070 -11.69901 -11.61702 -11.54504 -11.52803 -11.35570 -11.09231 -10.92821 -10.82100 -10.66193 -10.46735 -10.42139 -10.24620 -10.14779 -9.53741 -9.12214 -8.76167 -8.29331 -8.25727 -7.99979 -6.45344 -3.86030 2.44282 3.03427 3.15344 3.24354 3.29913 3.61734 3.80858 3.87788 4.17259 4.31394 4.33344 4.45344 4.60492 4.63804 4.69450 4.90718 4.93329 4.97542 5.15058 5.18137 5.32898 5.36850 5.39791 5.40624 5.41473 5.45624 5.51113 5.60581 5.67158 5.68136 5.71518 5.75068 5.78414 5.84350 5.86092 5.94611 5.96099 5.98752 6.08760 6.21837 6.24974 6.36097 6.55276 6.76874 6.78956 7.14689 7.38712 7.51944 8.01961 8.11212 8.57548 9.14708 9.49904 10.01816 10.72356 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.003054 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.982592 B = 9165.379541 C =10853.589847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.497 5.497 3 C 0.010 3.990 4 C 0.061 3.939 5 C 0.501 3.499 6 O -0.544 6.544 7 N -0.721 5.721 8 C 0.141 3.859 9 C 0.007 3.993 10 H 0.082 0.918 11 C -0.135 4.135 12 C 0.017 3.983 13 N -0.444 5.444 14 C 0.011 3.989 15 C 0.444 3.556 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.121 4.121 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.399 0.601 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 16.843 -6.790 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.219 5.219 3 C -0.138 4.138 4 C -0.033 4.033 5 C 0.286 3.714 6 O -0.422 6.422 7 N -0.373 5.373 8 C 0.017 3.983 9 C -0.103 4.103 10 H 0.099 0.901 11 C -0.173 4.173 12 C -0.111 4.111 13 N -0.167 5.167 14 C -0.121 4.121 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.159 4.159 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.234 0.766 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.091 0.909 50 H 0.098 0.902 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.442 17.255 -7.175 19.463 hybrid contribution 0.807 -1.098 0.852 1.607 sum 6.249 16.157 -6.323 18.441 Atomic orbital electron populations 1.22533 0.86784 1.02376 1.02077 1.62323 1.08720 1.14269 1.36620 1.22534 1.00146 0.88818 1.02259 1.22495 0.97795 0.96022 0.87035 1.21593 0.78966 0.84509 0.86309 1.90612 1.40834 1.23764 1.87013 1.46129 1.62890 1.21958 1.06299 1.21277 1.01238 0.95553 0.80223 1.23804 0.96884 0.93987 0.95588 0.90053 1.23334 1.01973 0.97788 0.94251 1.23723 1.02410 0.94144 0.90868 1.68463 1.39952 0.99958 1.08282 1.22470 0.96326 0.92335 1.00994 1.19619 0.88232 0.83713 0.85511 1.90532 1.24401 1.85293 1.45694 1.41860 1.21421 1.04812 1.52033 1.19686 1.03629 0.84053 1.35464 0.87979 1.25246 0.96691 0.99046 0.96868 1.69606 1.20429 1.24167 1.40115 0.85871 0.79287 0.80165 0.79070 1.20358 1.20915 1.19440 1.23028 0.99639 0.91675 1.01865 1.22724 0.96107 0.96978 1.00361 1.23006 0.92174 0.99283 1.01420 0.92906 0.91363 0.91611 0.91810 0.91542 0.92658 0.76562 0.90491 0.91034 0.90880 0.88876 0.91486 0.88657 0.90015 0.92735 0.77588 0.91868 0.89376 0.89900 0.89101 0.90867 0.90196 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.08 60.06 0.55 0.66 16 2 N -0.50 -5.47 4.81 -235.81 -1.13 -6.60 16 3 C 0.01 0.10 9.17 60.06 0.55 0.66 16 4 C 0.06 0.65 0.42 -131.94 -0.06 0.59 16 5 C 0.50 6.41 6.51 -10.99 -0.07 6.34 16 6 O -0.54 -8.48 12.34 5.55 0.07 -8.41 16 7 N -0.72 -8.33 5.29 -60.30 -0.32 -8.65 16 8 C 0.14 1.66 5.72 -4.05 -0.02 1.64 16 9 C 0.01 0.08 3.35 -66.65 -0.22 -0.14 16 10 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 11 C -0.14 -1.44 7.85 -25.80 -0.20 -1.64 16 12 C 0.02 0.24 7.14 -2.77 -0.02 0.22 16 13 N -0.44 -6.87 5.65 -232.15 -1.31 -8.18 16 14 C 0.01 0.18 5.23 -4.98 -0.03 0.15 16 15 C 0.44 10.20 7.65 -10.98 -0.08 10.12 16 16 O -0.58 -15.43 15.46 5.55 0.09 -15.35 16 17 N -0.56 -13.91 5.29 -10.96 -0.06 -13.96 16 18 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 22 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.12 -1.26 7.03 -25.92 -0.18 -1.44 16 27 C -0.12 -1.07 8.00 -25.92 -0.21 -1.27 16 28 C -0.12 -1.05 7.13 -25.91 -0.18 -1.23 16 29 H 0.05 0.71 6.01 -51.93 -0.31 0.40 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.74 6.99 -51.93 -0.36 0.37 16 32 H 0.06 0.57 6.59 -51.93 -0.34 0.23 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.68 5.87 -51.93 -0.30 0.38 16 35 H 0.40 4.17 6.07 -40.82 -0.25 3.93 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 40 H 0.07 0.92 7.69 -51.93 -0.40 0.52 16 41 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.08 1.20 7.31 -51.93 -0.38 0.82 16 43 H 0.05 0.80 7.68 -51.93 -0.40 0.40 16 44 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 45 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 46 H 0.09 0.90 6.59 -51.93 -0.34 0.55 16 47 H 0.08 0.88 7.19 -51.93 -0.37 0.51 16 48 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.08 0.66 6.63 -51.93 -0.34 0.32 16 51 H 0.09 0.68 7.99 -51.93 -0.42 0.27 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -32.53 399.31 -9.64 -42.18 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -8.27 Total: 13.61 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.42 Total: 6.83 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -2.10 Total: -60.67 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.15 Total: -23.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.53 -9.64 -42.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483655007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.976 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds