Wall clock time and date at job start Tue Mar 31 2020 20:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99758 * 2 1 4 4 C 1.46902 * 110.99745 * 123.94981 * 2 1 3 5 5 C 1.50696 * 112.85364 * 303.32038 * 4 2 1 6 6 O 1.21284 * 119.99822 * 343.60982 * 5 4 2 7 7 N 1.34777 * 120.00173 * 163.60477 * 5 4 2 8 8 C 1.46501 * 119.99886 * 184.48025 * 7 5 4 9 9 C 1.52999 * 109.46986 * 180.02562 * 8 7 5 10 10 H 1.09001 * 112.78964 * 284.19155 * 9 8 7 11 11 C 1.53510 * 113.47873 * 153.37727 * 9 8 7 12 12 C 1.53508 * 83.57841 * 219.21010 * 11 9 8 13 13 N 1.47476 * 87.93146 * 26.02359 * 12 11 9 14 14 C 1.46901 * 111.00169 * 221.29603 * 13 12 11 15 15 C 1.50701 * 109.47125 * 293.53174 * 14 13 12 16 16 O 1.21289 * 119.99808 * 353.28261 * 15 14 13 17 17 N 1.34776 * 119.99983 * 173.27791 * 15 14 13 18 18 C 1.37093 * 120.00309 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99805 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00309 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99784 * 359.71770 * 20 18 17 22 22 Si 1.86805 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46929 * 59.99628 * 22 20 18 24 24 H 1.48500 * 109.46967 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46887 * 300.00004 * 22 20 18 26 26 C 1.53785 * 113.68865 * 74.59324 * 4 2 1 27 27 C 1.53775 * 87.08552 * 89.12508 * 26 4 2 28 28 C 1.53779 * 113.61107 * 172.12176 * 4 2 1 29 29 H 1.09003 * 109.46997 * 302.47504 * 1 2 3 30 30 H 1.08995 * 109.46669 * 62.47517 * 1 2 3 31 31 H 1.08998 * 109.46822 * 182.47512 * 1 2 3 32 32 H 1.09008 * 109.46714 * 183.95047 * 3 2 1 33 33 H 1.08999 * 109.47222 * 303.94842 * 3 2 1 34 34 H 1.09001 * 109.47112 * 63.95340 * 3 2 1 35 35 H 0.97000 * 120.00178 * 4.47925 * 7 5 4 36 36 H 1.08999 * 109.47206 * 60.00336 * 8 7 5 37 37 H 1.09003 * 109.47003 * 299.99929 * 8 7 5 38 38 H 1.09003 * 114.16876 * 105.56049 * 11 9 8 39 39 H 1.09002 * 114.34617 * 332.87232 * 11 9 8 40 40 H 1.09004 * 113.47318 * 271.25716 * 12 11 9 41 41 H 1.09000 * 113.53294 * 140.80275 * 12 11 9 42 42 H 1.08995 * 109.47316 * 173.52901 * 14 13 12 43 43 H 1.08997 * 109.46913 * 53.53104 * 14 13 12 44 44 H 0.97006 * 119.99947 * 359.97438 * 17 15 14 45 45 H 0.97000 * 119.99554 * 179.97438 * 21 20 18 46 46 H 1.09006 * 113.61056 * 203.67568 * 26 4 2 47 47 H 1.09001 * 113.61189 * 334.56699 * 26 4 2 48 48 H 1.09001 * 113.61009 * 270.88839 * 27 26 4 49 49 H 1.08992 * 113.61686 * 139.98096 * 27 26 4 50 50 H 1.09003 * 113.61838 * 25.35178 * 28 4 2 51 51 H 1.09008 * 113.61456 * 156.25560 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.4930 -0.2612 2.4657 6 8 0.9886 0.8390 2.5448 7 7 1.6040 -1.0322 3.5655 8 6 1.0283 -0.5837 4.8358 9 6 1.2929 -1.6352 5.9152 10 1 0.6448 -2.5067 5.8236 11 6 1.3404 -1.0550 7.3356 12 6 2.4911 -2.0542 7.5198 13 7 2.7197 -1.9773 6.0649 14 6 3.0040 -3.3057 5.5057 15 6 4.3216 -3.8044 6.0407 16 8 5.0184 -3.0742 6.7134 17 7 4.7257 -5.0617 5.7717 18 6 5.9241 -5.5156 6.2588 19 1 6.5446 -4.8655 6.8578 20 6 6.3409 -6.8117 5.9811 21 7 5.5838 -7.6041 5.2561 22 14 7.9742 -7.4299 6.6442 23 1 7.9616 -7.3671 8.1279 24 1 8.1849 -8.8344 6.2103 25 1 9.0741 -6.5796 6.1222 26 6 1.8676 -2.2892 0.9692 27 6 3.2461 -2.2507 0.2889 28 6 3.5192 -0.9680 1.0919 29 1 -0.3633 0.5518 0.8670 30 1 -0.3632 0.4749 -0.9113 31 1 -0.3633 -1.0267 0.0444 32 1 3.0829 1.3432 -0.0708 33 1 1.5899 1.9163 -0.8525 34 1 1.7043 1.8723 0.9233 35 1 2.0652 -1.8842 3.5160 36 1 -0.0465 -0.4452 4.7187 37 1 1.4866 0.3609 5.1290 38 1 0.4581 -1.2744 7.9370 39 1 1.6450 -0.0095 7.3840 40 1 2.1625 -3.0375 7.8564 41 1 3.3184 -1.6612 8.1108 42 1 3.0549 -3.2391 4.4190 43 1 2.2111 -3.9971 5.7906 44 1 4.1682 -5.6457 5.2341 45 1 5.8750 -8.5088 5.0619 46 1 1.8616 -2.8339 1.9133 47 1 1.0594 -2.5882 0.3017 48 1 3.1972 -2.0894 -0.7880 49 1 3.8923 -3.0841 0.5642 50 1 4.0447 -0.2005 0.5235 51 1 3.9649 -1.1515 2.0697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483655008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:23 Heat of formation + Delta-G solvation = 5.356581 kcal Electronic energy + Delta-G solvation = -30980.273690 eV Core-core repulsion = 26917.147940 eV Total energy + Delta-G solvation = -4063.125750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14569 -40.28283 -38.00866 -37.68359 -35.59545 -34.12506 -33.92272 -31.46045 -30.73581 -28.80760 -28.07467 -26.34645 -25.87876 -25.40103 -23.80956 -23.59540 -22.48690 -21.16240 -19.81673 -19.35747 -18.91498 -17.97826 -17.67011 -16.51205 -16.21360 -15.97926 -15.56518 -15.29904 -15.13333 -14.83004 -14.65222 -14.42374 -14.09763 -14.01905 -13.85693 -13.71318 -13.59819 -12.85635 -12.58976 -12.38220 -12.22305 -12.10083 -11.94562 -11.87442 -11.76366 -11.62165 -11.56128 -11.46458 -11.41058 -11.10406 -10.86980 -10.81850 -10.53103 -10.48732 -10.40801 -10.27421 -10.11038 -9.55951 -9.07081 -8.81038 -8.36244 -8.27097 -8.03751 -6.48392 -3.89414 2.48431 3.06490 3.15425 3.21988 3.26068 3.63977 3.79943 3.92569 4.15914 4.32845 4.40832 4.42254 4.67442 4.67881 4.71267 4.89035 4.93329 4.98019 5.16100 5.18452 5.32525 5.35470 5.39380 5.42993 5.46486 5.48460 5.54250 5.56328 5.69026 5.69430 5.75491 5.77592 5.81283 5.84155 5.87763 5.96503 6.01353 6.03210 6.14360 6.16503 6.21686 6.39572 6.53400 6.78561 6.80117 7.12458 7.44217 7.48760 7.97923 8.15255 8.53309 9.10899 9.45607 9.96970 10.69024 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.003127 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.455158 B = 8952.885372 C =10657.055400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.497 5.497 3 C 0.008 3.992 4 C 0.061 3.939 5 C 0.501 3.499 6 O -0.547 6.547 7 N -0.716 5.716 8 C 0.140 3.860 9 C 0.003 3.997 10 H 0.082 0.918 11 C -0.137 4.137 12 C 0.015 3.985 13 N -0.436 5.436 14 C 0.008 3.992 15 C 0.441 3.559 16 O -0.576 6.576 17 N -0.561 5.561 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.025 3.975 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.123 4.123 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.392 0.608 45 H 0.273 0.727 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.422 10.095 -7.939 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.219 5.219 3 C -0.140 4.140 4 C -0.033 4.033 5 C 0.286 3.714 6 O -0.425 6.425 7 N -0.369 5.369 8 C 0.016 3.984 9 C -0.107 4.107 10 H 0.100 0.900 11 C -0.175 4.175 12 C -0.113 4.113 13 N -0.159 5.159 14 C -0.124 4.124 15 C 0.226 3.774 16 O -0.460 6.460 17 N -0.198 5.198 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.177 4.177 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.161 4.161 27 C -0.163 4.163 28 C -0.160 4.160 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.225 0.775 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.109 0.891 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.592 11.340 -8.232 18.186 hybrid contribution -0.220 -1.504 0.906 1.770 sum -11.812 9.835 -7.327 17.027 Atomic orbital electron populations 1.22492 0.87165 1.01991 1.01884 1.62325 1.08342 1.14520 1.36722 1.22574 1.00426 0.88613 1.02343 1.22490 0.98070 0.95811 0.86951 1.21578 0.78509 0.84953 0.86323 1.90603 1.45333 1.20293 1.86317 1.46125 1.57882 1.23749 1.09170 1.21315 0.97806 0.97454 0.81808 1.23839 0.92567 0.98543 0.95747 0.89990 1.23202 0.99181 1.00655 0.94446 1.23545 0.98052 0.98384 0.91351 1.68898 1.16045 1.23614 1.07367 1.22550 0.98009 0.91402 1.00488 1.19585 0.88064 0.83396 0.86390 1.90541 1.56567 1.56153 1.42741 1.41859 1.20005 1.10950 1.46973 1.19642 0.96256 0.97029 1.30108 0.87977 1.25253 0.99623 0.95930 0.96939 1.69595 1.37992 1.08344 1.38226 0.85927 0.81546 0.77584 0.79247 1.19906 1.20920 1.19822 1.23007 0.99635 0.91939 1.01558 1.22724 0.95943 0.97381 1.00224 1.23037 0.91855 0.99253 1.01878 0.93459 0.91309 0.91781 0.91625 0.91635 0.92273 0.76257 0.91495 0.90824 0.90537 0.88688 0.91544 0.88780 0.89886 0.92622 0.77534 0.91747 0.89678 0.90100 0.89141 0.90659 0.90111 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.07 60.07 0.54 0.68 16 2 N -0.50 -5.53 4.81 -235.80 -1.13 -6.66 16 3 C 0.01 0.09 9.17 60.06 0.55 0.64 16 4 C 0.06 0.69 0.44 -131.94 -0.06 0.63 16 5 C 0.50 6.65 6.45 -10.99 -0.07 6.58 16 6 O -0.55 -8.64 12.52 5.55 0.07 -8.57 16 7 N -0.72 -8.75 5.26 -60.29 -0.32 -9.06 16 8 C 0.14 1.66 5.82 -4.04 -0.02 1.63 16 9 C 0.00 0.04 3.25 -71.43 -0.23 -0.19 16 10 H 0.08 0.85 7.64 -51.93 -0.40 0.45 16 11 C -0.14 -1.48 8.00 -26.20 -0.21 -1.69 16 12 C 0.02 0.23 6.40 -7.55 -0.05 0.18 16 13 N -0.44 -6.67 5.73 -237.95 -1.36 -8.03 16 14 C 0.01 0.13 5.09 -4.97 -0.03 0.10 16 15 C 0.44 9.88 7.46 -10.99 -0.08 9.80 16 16 O -0.58 -15.07 15.07 5.55 0.08 -14.98 16 17 N -0.56 -13.58 5.29 -10.96 -0.06 -13.64 16 18 C -0.30 -8.13 9.68 -14.94 -0.14 -8.27 16 19 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -23.71 13.05 55.50 0.72 -22.98 16 22 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.12 -1.21 7.03 -25.92 -0.18 -1.40 16 27 C -0.13 -1.23 8.00 -25.92 -0.21 -1.44 16 28 C -0.12 -1.34 7.14 -25.92 -0.19 -1.53 16 29 H 0.05 0.58 6.20 -51.93 -0.32 0.26 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 7.08 -51.93 -0.37 0.24 16 32 H 0.07 0.68 6.53 -51.92 -0.34 0.34 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.78 5.76 -51.93 -0.30 0.48 16 35 H 0.40 4.69 4.61 -40.82 -0.19 4.50 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.97 7.88 -51.93 -0.41 0.57 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 40 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 41 H 0.09 1.57 8.00 -51.93 -0.42 1.16 16 42 H 0.08 1.20 6.53 -51.93 -0.34 0.86 16 43 H 0.06 0.81 7.56 -51.93 -0.39 0.41 16 44 H 0.39 9.02 7.90 -40.82 -0.32 8.69 16 45 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.08 0.80 6.42 -51.93 -0.33 0.47 16 47 H 0.08 0.75 7.27 -51.93 -0.38 0.37 16 48 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.86 6.56 -51.93 -0.34 0.52 16 51 H 0.09 1.10 8.09 -51.92 -0.42 0.67 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -31.58 395.21 -9.66 -41.24 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -8.13 Total: 14.94 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.47 Total: 6.25 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -2.15 Total: -60.38 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.15 Total: -23.56 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.58 -9.66 -41.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483655008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.599 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds