Wall clock time and date at job start Tue Mar 31 2020 20:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99758 * 2 1 4 4 C 1.46902 * 110.99745 * 123.94981 * 2 1 3 5 5 C 1.50696 * 112.85364 * 303.32038 * 4 2 1 6 6 O 1.21284 * 119.99822 * 343.60982 * 5 4 2 7 7 N 1.34777 * 120.00173 * 163.60477 * 5 4 2 8 8 C 1.46501 * 119.99886 * 184.48025 * 7 5 4 9 9 C 1.52999 * 109.46986 * 180.02562 * 8 7 5 10 10 H 1.09001 * 112.78964 * 284.19155 * 9 8 7 11 11 C 1.53510 * 113.47873 * 153.37727 * 9 8 7 12 12 C 1.53508 * 83.57841 * 219.21010 * 11 9 8 13 13 N 1.47476 * 87.93146 * 26.02359 * 12 11 9 14 14 C 1.46901 * 111.00169 * 221.29603 * 13 12 11 15 15 C 1.50701 * 109.47125 * 293.53174 * 14 13 12 16 16 O 1.21289 * 119.99808 * 353.28261 * 15 14 13 17 17 N 1.34776 * 119.99983 * 173.27791 * 15 14 13 18 18 C 1.37093 * 120.00309 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99805 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00309 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99784 * 359.71770 * 20 18 17 22 22 Si 1.86805 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46929 * 59.99628 * 22 20 18 24 24 H 1.48500 * 109.46967 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46887 * 300.00004 * 22 20 18 26 26 C 1.53785 * 113.68865 * 74.59324 * 4 2 1 27 27 C 1.53775 * 87.08552 * 89.12508 * 26 4 2 28 28 C 1.53779 * 113.61107 * 172.12176 * 4 2 1 29 29 H 1.09003 * 109.46997 * 302.47504 * 1 2 3 30 30 H 1.08995 * 109.46669 * 62.47517 * 1 2 3 31 31 H 1.08998 * 109.46822 * 182.47512 * 1 2 3 32 32 H 1.09008 * 109.46714 * 183.95047 * 3 2 1 33 33 H 1.08999 * 109.47222 * 303.94842 * 3 2 1 34 34 H 1.09001 * 109.47112 * 63.95340 * 3 2 1 35 35 H 0.97000 * 120.00178 * 4.47925 * 7 5 4 36 36 H 1.08999 * 109.47206 * 60.00336 * 8 7 5 37 37 H 1.09003 * 109.47003 * 299.99929 * 8 7 5 38 38 H 1.09003 * 114.16876 * 105.56049 * 11 9 8 39 39 H 1.09002 * 114.34617 * 332.87232 * 11 9 8 40 40 H 1.09004 * 113.47318 * 271.25716 * 12 11 9 41 41 H 1.09000 * 113.53294 * 140.80275 * 12 11 9 42 42 H 1.08995 * 109.47316 * 173.52901 * 14 13 12 43 43 H 1.08997 * 109.46913 * 53.53104 * 14 13 12 44 44 H 0.97006 * 119.99947 * 359.97438 * 17 15 14 45 45 H 0.97000 * 119.99554 * 179.97438 * 21 20 18 46 46 H 1.09006 * 113.61056 * 203.67568 * 26 4 2 47 47 H 1.09001 * 113.61189 * 334.56699 * 26 4 2 48 48 H 1.09001 * 113.61009 * 270.88839 * 27 26 4 49 49 H 1.08992 * 113.61686 * 139.98096 * 27 26 4 50 50 H 1.09003 * 113.61838 * 25.35178 * 28 4 2 51 51 H 1.09008 * 113.61456 * 156.25560 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.4930 -0.2612 2.4657 6 8 0.9886 0.8390 2.5448 7 7 1.6040 -1.0322 3.5655 8 6 1.0283 -0.5837 4.8358 9 6 1.2929 -1.6352 5.9152 10 1 0.6448 -2.5067 5.8236 11 6 1.3404 -1.0550 7.3356 12 6 2.4911 -2.0542 7.5198 13 7 2.7197 -1.9773 6.0649 14 6 3.0040 -3.3057 5.5057 15 6 4.3216 -3.8044 6.0407 16 8 5.0184 -3.0742 6.7134 17 7 4.7257 -5.0617 5.7717 18 6 5.9241 -5.5156 6.2588 19 1 6.5446 -4.8655 6.8578 20 6 6.3409 -6.8117 5.9811 21 7 5.5838 -7.6041 5.2561 22 14 7.9742 -7.4299 6.6442 23 1 7.9616 -7.3671 8.1279 24 1 8.1849 -8.8344 6.2103 25 1 9.0741 -6.5796 6.1222 26 6 1.8676 -2.2892 0.9692 27 6 3.2461 -2.2507 0.2889 28 6 3.5192 -0.9680 1.0919 29 1 -0.3633 0.5518 0.8670 30 1 -0.3632 0.4749 -0.9113 31 1 -0.3633 -1.0267 0.0444 32 1 3.0829 1.3432 -0.0708 33 1 1.5899 1.9163 -0.8525 34 1 1.7043 1.8723 0.9233 35 1 2.0652 -1.8842 3.5160 36 1 -0.0465 -0.4452 4.7187 37 1 1.4866 0.3609 5.1290 38 1 0.4581 -1.2744 7.9370 39 1 1.6450 -0.0095 7.3840 40 1 2.1625 -3.0375 7.8564 41 1 3.3184 -1.6612 8.1108 42 1 3.0549 -3.2391 4.4190 43 1 2.2111 -3.9971 5.7906 44 1 4.1682 -5.6457 5.2341 45 1 5.8750 -8.5088 5.0619 46 1 1.8616 -2.8339 1.9133 47 1 1.0594 -2.5882 0.3017 48 1 3.1972 -2.0894 -0.7880 49 1 3.8923 -3.0841 0.5642 50 1 4.0447 -0.2005 0.5235 51 1 3.9649 -1.1515 2.0697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483655008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:22 Heat of formation + Delta-G solvation = -20.132546 kcal Electronic energy + Delta-G solvation = -30981.378981 eV Core-core repulsion = 26917.147940 eV Total energy + Delta-G solvation = -4064.231042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11421 -41.41451 -39.60970 -38.82133 -36.51315 -35.95134 -35.01816 -33.33845 -32.09072 -29.82262 -28.91803 -27.55949 -27.24004 -26.22908 -25.37340 -24.55647 -23.41413 -22.12727 -21.11001 -20.80212 -19.93410 -19.82864 -18.57681 -17.81614 -17.39335 -17.21279 -16.66050 -16.48433 -16.37586 -16.19424 -15.75916 -15.72711 -15.55575 -15.18332 -14.96130 -14.90228 -14.60078 -14.23845 -13.82119 -13.54752 -13.43212 -13.25567 -13.00702 -12.92929 -12.90168 -12.78362 -12.70172 -12.51357 -12.45551 -12.39843 -12.34101 -12.13826 -11.93648 -11.69857 -11.60042 -11.47008 -11.23836 -11.06139 -10.33189 -10.08421 -10.01655 -9.81152 -9.20595 -8.46846 -5.95030 1.38829 1.41917 1.47767 1.51792 2.02242 2.11732 2.28260 2.79035 2.81402 3.19235 3.22933 3.47418 3.54110 3.57630 3.72044 3.76053 3.86924 4.03646 4.12950 4.16589 4.24315 4.32905 4.37672 4.40437 4.50425 4.55839 4.62302 4.64791 4.66458 4.68263 4.82055 4.85891 4.89794 4.90483 4.97919 5.00312 5.08563 5.11897 5.16921 5.17226 5.30510 5.36433 5.41174 5.48387 5.90597 5.92679 5.93349 6.07930 6.45900 6.59950 7.12887 7.15596 7.55462 8.11493 8.69955 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.003127 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.455158 B = 8952.885372 C =10657.055400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.496 5.496 3 C 0.011 3.989 4 C 0.059 3.941 5 C 0.497 3.503 6 O -0.576 6.576 7 N -0.712 5.712 8 C 0.143 3.857 9 C 0.016 3.984 10 H 0.107 0.893 11 C -0.116 4.116 12 C 0.006 3.994 13 N -0.463 5.463 14 C 0.020 3.980 15 C 0.439 3.561 16 O -0.618 6.618 17 N -0.570 5.570 18 C -0.333 4.333 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.916 5.916 22 Si 0.987 3.013 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.126 4.126 29 H 0.025 0.975 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.404 0.596 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.823 9.252 -8.856 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.218 5.218 3 C -0.137 4.137 4 C -0.035 4.035 5 C 0.283 3.717 6 O -0.456 6.456 7 N -0.365 5.365 8 C 0.019 3.981 9 C -0.093 4.093 10 H 0.124 0.876 11 C -0.154 4.154 12 C -0.123 4.123 13 N -0.186 5.186 14 C -0.111 4.111 15 C 0.227 3.773 16 O -0.504 6.504 17 N -0.207 5.207 18 C -0.463 4.463 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.557 5.557 22 Si 0.811 3.189 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.164 4.164 29 H 0.044 0.956 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.241 0.759 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.115 0.885 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.013 10.478 -9.159 19.053 hybrid contribution 0.211 -1.162 1.208 1.690 sum -12.803 9.316 -7.951 17.718 Atomic orbital electron populations 1.22505 0.86646 1.02469 1.01642 1.62388 1.08774 1.14326 1.36288 1.22547 1.00746 0.88676 1.01726 1.22585 0.98057 0.96796 0.86077 1.21983 0.78029 0.84584 0.87147 1.90598 1.46711 1.21515 1.86804 1.46129 1.57536 1.23670 1.09146 1.21315 0.98370 0.96770 0.81686 1.23860 0.90452 0.99110 0.95911 0.87574 1.23143 0.98526 0.99592 0.94161 1.23548 0.98556 0.99521 0.90691 1.68901 1.19100 1.22894 1.07723 1.22451 0.94779 0.92483 1.01409 1.20650 0.89577 0.82294 0.84814 1.90516 1.58494 1.57082 1.44329 1.41900 1.19553 1.11824 1.47443 1.19567 0.97679 0.97599 1.31460 0.90591 1.25943 1.02496 0.95553 0.96828 1.69645 1.39063 1.08623 1.38371 0.85071 0.77748 0.77511 0.78527 1.19880 1.19432 1.19860 1.23032 0.99892 0.90562 1.02063 1.22688 0.95903 0.96543 1.00370 1.23040 0.91710 1.00126 1.01551 0.95601 0.89834 0.90744 0.91297 0.90103 0.94717 0.75906 0.90108 0.92584 0.87413 0.88728 0.91457 0.92038 0.87745 0.89979 0.76926 0.91262 0.89096 0.89076 0.88530 0.90584 0.90068 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.07 127.69 1.16 1.45 16 2 N -0.50 -10.37 4.81 -899.92 -4.33 -14.70 16 3 C 0.01 0.23 9.17 127.69 1.17 1.40 16 4 C 0.06 1.27 0.44 3.31 0.00 1.27 16 5 C 0.50 12.78 6.45 87.66 0.57 13.34 16 6 O -0.58 -18.13 12.52 -3.04 -0.04 -18.17 16 7 N -0.71 -16.37 5.26 -463.06 -2.44 -18.80 16 8 C 0.14 3.12 5.82 86.38 0.50 3.62 16 9 C 0.02 0.33 3.25 42.19 0.14 0.47 16 10 H 0.11 1.75 7.64 -2.39 -0.02 1.73 16 11 C -0.12 -2.27 8.00 30.94 0.25 -2.02 16 12 C 0.01 0.17 6.40 83.58 0.53 0.70 16 13 N -0.46 -13.64 5.73 -906.75 -5.19 -18.83 16 14 C 0.02 0.64 5.09 85.56 0.44 1.07 16 15 C 0.44 19.87 7.46 87.66 0.65 20.52 16 16 O -0.62 -33.31 15.07 -3.06 -0.05 -33.36 16 17 N -0.57 -27.84 5.29 -306.99 -1.62 -29.47 16 18 C -0.33 -18.38 9.68 84.04 0.81 -17.57 16 19 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 20 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 21 N -0.92 -47.65 13.05 21.66 0.28 -47.37 16 22 Si 0.99 41.96 29.55 68.60 2.03 43.99 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 C -0.12 -2.07 7.03 31.12 0.22 -1.85 16 27 C -0.12 -2.12 8.00 31.12 0.25 -1.87 16 28 C -0.13 -2.67 7.14 31.12 0.22 -2.45 16 29 H 0.03 0.62 6.20 -2.39 -0.01 0.60 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.26 7.08 -2.39 -0.02 1.25 16 32 H 0.07 1.39 6.53 -2.38 -0.02 1.38 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.03 0.92 5.76 -2.39 -0.01 0.91 16 35 H 0.40 8.69 4.61 -92.71 -0.43 8.26 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.44 7.88 -2.39 -0.02 1.42 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.88 7.94 -2.39 -0.02 1.86 16 40 H 0.07 1.89 7.83 -2.38 -0.02 1.87 16 41 H 0.06 2.14 8.00 -2.39 -0.02 2.12 16 42 H 0.10 2.80 6.53 -2.39 -0.02 2.78 16 43 H 0.08 2.14 7.56 -2.39 -0.02 2.13 16 44 H 0.40 18.20 7.90 -92.70 -0.73 17.47 16 45 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 46 H 0.09 1.49 6.42 -2.38 -0.02 1.47 16 47 H 0.09 1.43 7.27 -2.39 -0.02 1.42 16 48 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 49 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.69 6.56 -2.39 -0.02 1.67 16 51 H 0.08 1.88 8.09 -2.38 -0.02 1.86 16 Total: -1.00 -69.88 395.21 -4.18 -74.06 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -0.20 Total: 44.50 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 7.38 Total: 18.15 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -13.29 Total: -129.17 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.08 Total: -51.53 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.88 -4.18 -74.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483655008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.928 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds