Wall clock time and date at job start Tue Mar 31 2020 20:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00212 * 2 1 4 4 O 1.21287 * 119.99805 * 354.98428 * 3 2 1 5 5 C 1.50700 * 120.00587 * 174.98728 * 3 2 1 6 6 C 1.50698 * 115.54689 * 65.05801 * 5 3 2 7 7 O 1.21285 * 120.00054 * 219.42035 * 6 5 3 8 8 N 1.34773 * 120.00295 * 39.41375 * 6 5 3 9 9 C 1.46500 * 120.00173 * 174.84268 * 8 6 5 10 10 C 1.53004 * 109.47475 * 180.02562 * 9 8 6 11 11 N 1.46899 * 109.47275 * 179.97438 * 10 9 8 12 12 C 1.46843 * 111.00235 * 294.21397 * 11 10 9 13 13 C 1.53034 * 109.52457 * 174.16256 * 12 11 10 14 14 C 1.53117 * 109.28322 * 59.17383 * 13 12 11 15 15 N 1.46498 * 109.52772 * 182.44120 * 14 13 12 16 16 C 1.36931 * 119.99997 * 274.68881 * 15 14 13 17 17 H 1.08000 * 120.00210 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00005 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99978 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47359 * 89.99766 * 20 18 16 22 22 H 1.48506 * 109.46955 * 209.99793 * 20 18 16 23 23 H 1.48496 * 109.47077 * 329.99579 * 20 18 16 24 24 C 1.53121 * 109.16064 * 302.35143 * 14 13 12 25 25 C 1.46839 * 111.00068 * 170.00071 * 11 10 9 26 26 C 1.52997 * 117.52173 * 210.75677 * 5 3 2 27 27 C 1.53000 * 117.49752 * 279.39061 * 5 3 2 28 28 H 1.08998 * 109.46873 * 299.99744 * 1 2 3 29 29 H 1.08999 * 109.47258 * 59.99600 * 1 2 3 30 30 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00114 * 180.02562 * 2 1 3 32 32 H 0.97002 * 120.00137 * 355.12701 * 8 6 5 33 33 H 1.09003 * 109.47451 * 300.00567 * 9 8 6 34 34 H 1.09005 * 109.47194 * 59.99964 * 9 8 6 35 35 H 1.08998 * 109.47004 * 300.00070 * 10 9 8 36 36 H 1.08997 * 109.46681 * 60.00054 * 10 9 8 37 37 H 1.09004 * 109.45774 * 294.17476 * 12 11 10 38 38 H 1.08998 * 109.46747 * 54.14078 * 12 11 10 39 39 H 1.08999 * 109.50162 * 299.23349 * 13 12 11 40 40 H 1.09000 * 109.50497 * 179.11664 * 13 12 11 41 41 H 1.09005 * 109.57055 * 62.28505 * 14 13 12 42 42 H 0.97005 * 119.99779 * 94.68269 * 15 14 13 43 43 H 0.96994 * 120.00001 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.50017 * 297.70698 * 24 14 13 45 45 H 1.09000 * 109.50274 * 177.59153 * 24 14 13 46 46 H 1.09004 * 109.46500 * 305.85969 * 25 11 10 47 47 H 1.09001 * 109.46751 * 65.83319 * 25 11 10 48 48 H 1.09000 * 117.50337 * 214.96688 * 26 5 3 49 49 H 1.09005 * 117.49688 * 359.97438 * 26 5 3 50 50 H 1.08993 * 117.49920 * 359.96961 * 27 5 3 51 51 H 1.08995 * 117.49503 * 144.97437 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5360 2.2155 -0.0918 5 6 3.6416 1.1697 0.1140 6 6 4.3820 0.5442 -1.0399 7 8 5.3639 -0.1369 -0.8326 8 7 3.9530 0.7414 -2.3022 9 6 4.7349 0.2289 -3.4301 10 6 4.0328 0.5861 -4.7417 11 7 4.8172 0.0727 -5.8727 12 6 6.1137 0.7555 -5.9671 13 6 6.9594 0.0986 -7.0603 14 6 6.2164 0.1872 -8.3962 15 7 6.9946 -0.4914 -9.4354 16 6 7.9848 0.1825 -10.0990 17 1 8.1918 1.2144 -9.8567 18 6 8.7226 -0.4607 -11.0834 19 7 8.4707 -1.7184 -11.3784 20 14 10.0729 0.4588 -11.9893 21 1 11.3582 0.2906 -11.2649 22 1 10.2050 -0.0849 -13.3649 23 1 9.7288 1.9017 -12.0583 24 6 4.8496 -0.4889 -8.2568 25 6 4.0651 0.1852 -7.1289 26 6 4.2959 2.3661 0.8078 27 6 4.2443 1.0082 1.5110 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.1287 1.2264 -2.4641 33 1 5.7287 0.6766 -3.4167 34 1 4.8235 -0.8545 -3.3483 35 1 3.0390 0.1387 -4.7554 36 1 3.9447 1.6695 -4.8232 37 1 5.9542 1.8054 -6.2130 38 1 6.6337 0.6815 -5.0119 39 1 7.1310 -0.9479 -6.8081 40 1 7.9156 0.6156 -7.1408 41 1 6.0790 1.2337 -8.6689 42 1 6.8085 -1.4181 -9.6533 43 1 8.9865 -2.1679 -12.0660 44 1 4.9879 -1.5445 -8.0235 45 1 4.2984 -0.3915 -9.1921 46 1 3.0970 -0.3032 -7.0176 47 1 3.9153 1.2377 -7.3695 48 1 5.2619 2.7008 0.4297 49 1 3.6394 3.1520 1.1816 50 1 3.5540 0.9006 2.3476 51 1 5.1762 0.4492 1.5954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484422702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:02 Heat of formation + Delta-G solvation = -30.424687 kcal Electronic energy + Delta-G solvation = -29257.845610 eV Core-core repulsion = 25193.168268 eV Total energy + Delta-G solvation = -4064.677342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17575 -39.51125 -38.85055 -36.68996 -35.70442 -35.13660 -34.48675 -32.31188 -30.56189 -30.02589 -28.44738 -27.67938 -25.15960 -24.03228 -23.13918 -22.99418 -22.34870 -21.82626 -21.21483 -20.19138 -19.31693 -18.78563 -17.08056 -16.79388 -16.54595 -16.43490 -15.82980 -15.58390 -15.42751 -15.08608 -14.76013 -14.58645 -14.52595 -14.04164 -13.78951 -13.50916 -13.45987 -13.34310 -13.21269 -12.92278 -12.83103 -12.46404 -12.15736 -11.93498 -11.68996 -11.62186 -11.54385 -11.19406 -11.11273 -10.86248 -10.76474 -10.67366 -10.54946 -10.24948 -10.17670 -10.13223 -9.72699 -9.72108 -9.57610 -9.40464 -8.85101 -8.27618 -6.92642 -5.74273 -3.02710 1.89511 2.00642 2.49489 2.56514 3.31317 3.44582 3.49631 3.51207 3.94900 4.06409 4.17868 4.25372 4.27943 4.60405 4.64191 4.70543 4.85535 4.96974 5.04891 5.14946 5.17901 5.21939 5.26639 5.32426 5.35605 5.42239 5.57493 5.58792 5.60019 5.67498 5.71192 5.76432 5.77398 5.89094 6.00709 6.05041 6.15376 6.28304 6.49117 6.51822 6.66169 6.81974 6.88777 7.01552 7.09795 7.22142 7.25071 7.56186 7.71617 7.75467 8.44525 9.55484 10.14290 10.49178 11.48439 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023220 B = 0.001830 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.556854 B =15299.090279 C =15934.954299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.727 5.727 3 C 0.552 3.448 4 O -0.525 6.525 5 C -0.205 4.205 6 C 0.556 3.444 7 O -0.524 6.524 8 N -0.722 5.722 9 C 0.120 3.880 10 C 0.045 3.955 11 N -0.532 5.532 12 C 0.054 3.946 13 C -0.132 4.132 14 C 0.177 3.823 15 N -0.724 5.724 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.121 4.121 25 C 0.065 3.935 26 C -0.119 4.119 27 C -0.126 4.126 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.406 0.594 32 H 0.400 0.600 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.111 0.889 49 H 0.115 0.885 50 H 0.107 0.893 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.986 4.506 26.914 32.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.378 5.378 3 C 0.336 3.664 4 O -0.401 6.401 5 C -0.212 4.212 6 C 0.340 3.660 7 O -0.400 6.400 8 N -0.373 5.373 9 C -0.003 4.003 10 C -0.084 4.084 11 N -0.257 5.257 12 C -0.074 4.074 13 C -0.173 4.173 14 C 0.067 3.933 15 N -0.365 5.365 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.160 4.160 25 C -0.063 4.063 26 C -0.156 4.156 27 C -0.163 4.163 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.240 0.760 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.050 0.950 48 H 0.129 0.871 49 H 0.133 0.867 50 H 0.126 0.874 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.512 4.396 26.941 31.903 hybrid contribution 0.326 0.792 -0.914 1.252 sum -16.186 5.187 26.027 31.086 Atomic orbital electron populations 1.21620 0.78804 1.02756 1.02608 1.45765 1.08077 1.08652 1.75333 1.19237 0.87150 0.83889 0.76118 1.90748 1.69514 1.31430 1.48402 1.21546 0.92629 1.10166 0.96851 1.18957 0.84226 0.80144 0.82656 1.90761 1.26665 1.38039 1.84501 1.45886 1.27546 1.58193 1.05681 1.21442 0.94777 1.00623 0.83468 1.22171 0.97522 0.98107 0.90572 1.61837 1.04019 1.56830 1.03027 1.22249 0.89700 0.95384 1.00046 1.22311 0.98503 1.01093 0.95344 1.20237 0.89335 0.95428 0.88280 1.42419 1.39835 1.13165 1.41033 1.19235 1.09122 0.95265 1.13207 0.91311 1.24742 1.00208 0.96216 0.99920 1.69662 1.43278 1.10170 1.35022 0.86208 0.82207 0.78751 0.79139 1.21755 1.21811 1.20844 1.21863 0.96908 1.00755 0.96452 1.22050 0.96488 0.98847 0.88955 1.23069 1.01948 0.91140 0.99466 1.23125 1.03138 0.99801 0.90256 0.92000 0.91790 0.90220 0.76000 0.76559 0.90889 0.89975 0.90414 0.94442 0.95234 0.91302 0.91622 0.91703 0.94085 0.78237 0.93555 0.91245 0.91458 0.91229 0.95033 0.87093 0.86676 0.87438 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.71 59.85 0.64 1.02 16 2 N -0.73 -4.16 5.71 -67.08 -0.38 -4.54 16 3 C 0.55 4.55 6.36 -10.99 -0.07 4.48 16 4 O -0.53 -5.98 16.70 5.55 0.09 -5.89 16 5 C -0.21 -1.63 2.39 -156.81 -0.38 -2.01 16 6 C 0.56 5.58 7.33 -10.99 -0.08 5.50 16 7 O -0.52 -6.99 16.28 5.55 0.09 -6.90 16 8 N -0.72 -6.49 5.49 -60.29 -0.33 -6.82 16 9 C 0.12 1.24 5.61 -4.04 -0.02 1.22 16 10 C 0.05 0.45 5.07 -3.82 -0.02 0.43 16 11 N -0.53 -6.93 4.66 -234.68 -1.09 -8.03 16 12 C 0.05 0.78 5.29 -3.84 -0.02 0.76 16 13 C -0.13 -2.38 5.68 -26.65 -0.15 -2.54 16 14 C 0.18 3.53 2.84 -67.81 -0.19 3.34 16 15 N -0.72 -18.26 5.12 -53.31 -0.27 -18.54 16 16 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.12 -2.00 5.57 -26.65 -0.15 -2.15 16 25 C 0.06 0.86 5.46 -3.84 -0.02 0.84 16 26 C -0.12 -0.81 9.76 -26.73 -0.26 -1.08 16 27 C -0.13 -0.78 9.75 -26.73 -0.26 -1.05 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.41 1.76 8.83 -40.82 -0.36 1.40 16 32 H 0.40 3.11 7.85 -40.82 -0.32 2.79 16 33 H 0.07 0.85 6.43 -51.93 -0.33 0.51 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 36 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.92 6.21 -51.93 -0.32 0.60 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 47 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.11 0.76 7.99 -51.93 -0.41 0.34 16 50 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.12 0.82 7.68 -51.93 -0.40 0.42 16 LS Contribution 413.97 15.07 6.24 6.24 Total: -1.00 -34.06 413.97 -9.95 -44.01 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -8.76 Total: 9.10 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.23 Total: 1.48 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -1.36 Total: -65.58 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.18 Total: -12.78 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.06 -9.95 -44.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484422702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.583 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds