Wall clock time and date at job start Tue Mar 31 2020 20:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00212 * 2 1 4 4 O 1.21287 * 119.99805 * 354.98428 * 3 2 1 5 5 C 1.50700 * 120.00587 * 174.98728 * 3 2 1 6 6 C 1.50698 * 115.54689 * 65.05801 * 5 3 2 7 7 O 1.21285 * 120.00054 * 219.42035 * 6 5 3 8 8 N 1.34773 * 120.00295 * 39.41375 * 6 5 3 9 9 C 1.46500 * 120.00173 * 174.84268 * 8 6 5 10 10 C 1.53004 * 109.47475 * 180.02562 * 9 8 6 11 11 N 1.46899 * 109.47275 * 179.97438 * 10 9 8 12 12 C 1.46843 * 111.00235 * 294.21397 * 11 10 9 13 13 C 1.53034 * 109.52457 * 174.16256 * 12 11 10 14 14 C 1.53117 * 109.28322 * 59.17383 * 13 12 11 15 15 N 1.46498 * 109.52772 * 182.44120 * 14 13 12 16 16 C 1.36931 * 119.99997 * 274.68881 * 15 14 13 17 17 H 1.08000 * 120.00210 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00005 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99978 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47359 * 89.99766 * 20 18 16 22 22 H 1.48506 * 109.46955 * 209.99793 * 20 18 16 23 23 H 1.48496 * 109.47077 * 329.99579 * 20 18 16 24 24 C 1.53121 * 109.16064 * 302.35143 * 14 13 12 25 25 C 1.46839 * 111.00068 * 170.00071 * 11 10 9 26 26 C 1.52997 * 117.52173 * 210.75677 * 5 3 2 27 27 C 1.53000 * 117.49752 * 279.39061 * 5 3 2 28 28 H 1.08998 * 109.46873 * 299.99744 * 1 2 3 29 29 H 1.08999 * 109.47258 * 59.99600 * 1 2 3 30 30 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00114 * 180.02562 * 2 1 3 32 32 H 0.97002 * 120.00137 * 355.12701 * 8 6 5 33 33 H 1.09003 * 109.47451 * 300.00567 * 9 8 6 34 34 H 1.09005 * 109.47194 * 59.99964 * 9 8 6 35 35 H 1.08998 * 109.47004 * 300.00070 * 10 9 8 36 36 H 1.08997 * 109.46681 * 60.00054 * 10 9 8 37 37 H 1.09004 * 109.45774 * 294.17476 * 12 11 10 38 38 H 1.08998 * 109.46747 * 54.14078 * 12 11 10 39 39 H 1.08999 * 109.50162 * 299.23349 * 13 12 11 40 40 H 1.09000 * 109.50497 * 179.11664 * 13 12 11 41 41 H 1.09005 * 109.57055 * 62.28505 * 14 13 12 42 42 H 0.97005 * 119.99779 * 94.68269 * 15 14 13 43 43 H 0.96994 * 120.00001 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.50017 * 297.70698 * 24 14 13 45 45 H 1.09000 * 109.50274 * 177.59153 * 24 14 13 46 46 H 1.09004 * 109.46500 * 305.85969 * 25 11 10 47 47 H 1.09001 * 109.46751 * 65.83319 * 25 11 10 48 48 H 1.09000 * 117.50337 * 214.96688 * 26 5 3 49 49 H 1.09005 * 117.49688 * 359.97438 * 26 5 3 50 50 H 1.08993 * 117.49920 * 359.96961 * 27 5 3 51 51 H 1.08995 * 117.49503 * 144.97437 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5360 2.2155 -0.0918 5 6 3.6416 1.1697 0.1140 6 6 4.3820 0.5442 -1.0399 7 8 5.3639 -0.1369 -0.8326 8 7 3.9530 0.7414 -2.3022 9 6 4.7349 0.2289 -3.4301 10 6 4.0328 0.5861 -4.7417 11 7 4.8172 0.0727 -5.8727 12 6 6.1137 0.7555 -5.9671 13 6 6.9594 0.0986 -7.0603 14 6 6.2164 0.1872 -8.3962 15 7 6.9946 -0.4914 -9.4354 16 6 7.9848 0.1825 -10.0990 17 1 8.1918 1.2144 -9.8567 18 6 8.7226 -0.4607 -11.0834 19 7 8.4707 -1.7184 -11.3784 20 14 10.0729 0.4588 -11.9893 21 1 11.3582 0.2906 -11.2649 22 1 10.2050 -0.0849 -13.3649 23 1 9.7288 1.9017 -12.0583 24 6 4.8496 -0.4889 -8.2568 25 6 4.0651 0.1852 -7.1289 26 6 4.2959 2.3661 0.8078 27 6 4.2443 1.0082 1.5110 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.1287 1.2264 -2.4641 33 1 5.7287 0.6766 -3.4167 34 1 4.8235 -0.8545 -3.3483 35 1 3.0390 0.1387 -4.7554 36 1 3.9447 1.6695 -4.8232 37 1 5.9542 1.8054 -6.2130 38 1 6.6337 0.6815 -5.0119 39 1 7.1310 -0.9479 -6.8081 40 1 7.9156 0.6156 -7.1408 41 1 6.0790 1.2337 -8.6689 42 1 6.8085 -1.4181 -9.6533 43 1 8.9865 -2.1679 -12.0660 44 1 4.9879 -1.5445 -8.0235 45 1 4.2984 -0.3915 -9.1921 46 1 3.0970 -0.3032 -7.0176 47 1 3.9153 1.2377 -7.3695 48 1 5.2619 2.7008 0.4297 49 1 3.6394 3.1520 1.1816 50 1 3.5540 0.9006 2.3476 51 1 5.1762 0.4492 1.5954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484422702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:01 Heat of formation + Delta-G solvation = -57.358338 kcal Electronic energy + Delta-G solvation = -29259.013541 eV Core-core repulsion = 25193.168268 eV Total energy + Delta-G solvation = -4065.845273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86022 -40.36446 -39.94439 -37.46008 -36.84205 -35.79360 -35.69720 -34.02056 -31.86732 -31.55960 -29.50255 -28.39295 -26.33822 -25.34924 -24.39694 -23.53612 -23.47957 -22.69014 -22.33643 -20.90087 -20.72253 -19.46043 -19.09813 -17.62350 -17.26395 -17.09966 -16.87396 -16.63404 -16.30879 -16.15245 -15.75085 -15.51564 -15.45966 -15.37087 -15.28116 -14.98315 -14.42799 -14.33808 -14.07207 -14.00826 -13.84691 -13.13365 -13.12323 -13.03393 -12.89123 -12.79293 -12.67616 -12.46740 -12.24350 -12.23008 -12.18140 -12.06697 -11.77042 -11.71815 -11.53779 -11.31730 -11.18072 -10.89565 -10.85961 -10.26631 -10.20672 -9.30817 -8.99704 -7.94090 -5.22382 1.25020 1.26991 1.45908 1.47754 1.55876 1.81637 1.99302 2.55675 2.71361 2.98697 3.38498 3.52678 3.55872 3.59754 3.75217 3.77481 3.81276 3.98862 4.06549 4.19308 4.33354 4.35644 4.42246 4.46804 4.53837 4.56913 4.62002 4.63728 4.69593 4.74271 4.79648 4.82957 4.90568 4.94902 4.95080 4.99170 5.08565 5.11753 5.16684 5.26781 5.29408 5.43411 5.49440 5.60738 6.08650 6.12330 6.27158 6.28582 6.35445 6.96006 7.04387 7.33818 8.11096 8.34309 9.29466 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023220 B = 0.001830 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.556854 B =15299.090279 C =15934.954299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.554 3.446 4 O -0.560 6.560 5 C -0.213 4.213 6 C 0.558 3.442 7 O -0.560 6.560 8 N -0.711 5.711 9 C 0.127 3.873 10 C 0.053 3.947 11 N -0.542 5.542 12 C 0.065 3.935 13 C -0.122 4.122 14 C 0.171 3.829 15 N -0.738 5.738 16 C -0.237 4.237 17 H 0.073 0.927 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.972 3.028 21 H -0.289 1.289 22 H -0.295 1.295 23 H -0.270 1.270 24 C -0.113 4.113 25 C 0.072 3.928 26 C -0.118 4.118 27 C -0.112 4.112 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.414 0.586 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.040 0.960 48 H 0.111 0.889 49 H 0.119 0.881 50 H 0.126 0.874 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.556 5.484 28.437 34.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C 0.339 3.661 4 O -0.438 6.438 5 C -0.219 4.219 6 C 0.343 3.657 7 O -0.439 6.439 8 N -0.363 5.363 9 C 0.003 3.997 10 C -0.075 4.075 11 N -0.268 5.268 12 C -0.063 4.063 13 C -0.163 4.163 14 C 0.062 3.938 15 N -0.377 5.377 16 C -0.369 4.369 17 H 0.091 0.909 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.801 3.199 21 H -0.216 1.216 22 H -0.222 1.222 23 H -0.195 1.195 24 C -0.152 4.152 25 C -0.056 4.056 26 C -0.156 4.156 27 C -0.150 4.150 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.249 0.751 32 H 0.245 0.755 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.115 0.885 47 H 0.058 0.942 48 H 0.129 0.871 49 H 0.138 0.862 50 H 0.145 0.855 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.131 5.393 28.501 34.207 hybrid contribution 0.757 0.471 -1.319 1.592 sum -17.374 5.865 27.182 32.789 Atomic orbital electron populations 1.21770 0.77771 1.04500 1.02078 1.45774 1.08785 1.08302 1.73809 1.19226 0.87068 0.83989 0.75784 1.90735 1.70072 1.32672 1.50356 1.21475 0.92449 1.11126 0.96862 1.19248 0.83733 0.79453 0.83217 1.90747 1.28348 1.39723 1.85047 1.45779 1.27570 1.57738 1.05180 1.21263 0.94490 0.99745 0.84160 1.22161 0.97717 0.98863 0.88794 1.61752 1.03857 1.57263 1.03891 1.22060 0.90141 0.95238 0.98866 1.22092 0.98248 1.00184 0.95783 1.20495 0.90779 0.94908 0.87579 1.42648 1.40058 1.12765 1.42252 1.19599 1.09129 0.95467 1.12711 0.90914 1.25558 1.02948 0.97168 1.01404 1.69819 1.44649 1.11728 1.35887 0.85164 0.79267 0.78089 0.77409 1.21577 1.22177 1.19453 1.21744 0.95233 1.00114 0.98070 1.21989 0.96777 0.99167 0.87638 1.23133 1.01863 0.91335 0.99233 1.23199 1.03048 0.98939 0.89775 0.92316 0.92537 0.87379 0.75051 0.75542 0.92195 0.91238 0.88312 0.93277 0.94517 0.90216 0.93349 0.93628 0.94648 0.79653 0.94097 0.92285 0.91721 0.88464 0.94203 0.87096 0.86247 0.85547 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.71 127.77 1.37 1.92 16 2 N -0.72 -6.77 5.71 -484.52 -2.77 -9.54 16 3 C 0.55 8.27 6.36 87.66 0.56 8.83 16 4 O -0.56 -12.06 16.70 -3.05 -0.05 -12.12 16 5 C -0.21 -3.08 2.39 -53.68 -0.13 -3.21 16 6 C 0.56 10.57 7.33 87.66 0.64 11.21 16 7 O -0.56 -14.64 16.28 -3.05 -0.05 -14.69 16 8 N -0.71 -11.56 5.49 -463.05 -2.54 -14.11 16 9 C 0.13 2.41 5.61 86.38 0.48 2.89 16 10 C 0.05 0.90 5.07 86.30 0.44 1.34 16 11 N -0.54 -12.89 4.66 -896.39 -4.17 -17.06 16 12 C 0.07 1.78 5.29 86.33 0.46 2.24 16 13 C -0.12 -4.46 5.68 30.64 0.17 -4.28 16 14 C 0.17 6.81 2.84 45.07 0.13 6.94 16 15 N -0.74 -38.02 5.12 -322.56 -1.65 -39.68 16 16 C -0.24 -13.39 9.93 84.03 0.83 -12.56 16 17 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 19 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 20 Si 0.97 46.89 29.55 68.60 2.03 48.91 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 C -0.11 -3.65 5.57 30.65 0.17 -3.48 16 25 C 0.07 1.72 5.46 86.33 0.47 2.19 16 26 C -0.12 -1.47 9.76 30.60 0.30 -1.17 16 27 C -0.11 -1.23 9.75 30.60 0.30 -0.93 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.41 2.68 8.83 -92.71 -0.82 1.86 16 32 H 0.41 5.43 7.85 -92.71 -0.73 4.71 16 33 H 0.06 1.31 6.43 -2.39 -0.02 1.30 16 34 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.10 1.34 7.99 -2.39 -0.02 1.32 16 36 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 37 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 2.03 6.21 -2.39 -0.01 2.01 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.45 8.08 -2.38 -0.02 1.43 16 42 H 0.37 20.64 7.80 -92.70 -0.72 19.92 16 43 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.10 1.85 8.02 -2.38 -0.02 1.83 16 47 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.12 1.41 7.99 -2.38 -0.02 1.39 16 50 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.12 1.43 7.68 -2.39 -0.02 1.41 16 Total: -1.00 -74.64 413.97 -3.58 -78.22 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -1.32 Total: 32.32 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 6.66 Total: 7.80 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -10.85 Total: -140.45 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.10 Total: -26.80 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -74.64 -3.58 -78.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484422702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.866 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds