Wall clock time and date at job start Tue Mar 31 2020 21:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00038 * 2 1 4 4 H 1.48493 * 109.47224 * 239.99883 * 3 2 1 5 5 H 1.48506 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47154 * 119.99923 * 3 2 1 7 7 C 1.38812 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 191.04285 * 7 2 1 9 9 N 1.36942 * 120.00241 * 11.03761 * 7 2 1 10 10 C 1.46929 * 120.62560 * 31.71653 * 9 7 2 11 11 C 1.53188 * 108.77216 * 126.37445 * 10 9 7 12 12 C 1.53043 * 109.31723 * 54.62896 * 11 10 9 13 13 C 1.52996 * 109.46184 * 178.62968 * 12 11 10 14 14 O 1.42899 * 109.47292 * 180.76013 * 13 12 11 15 15 N 1.46505 * 109.45618 * 58.65651 * 12 11 10 16 16 C 1.34777 * 119.99978 * 62.66327 * 15 12 11 17 17 O 1.21290 * 119.99846 * 354.88875 * 16 15 12 18 18 C 1.50697 * 120.00435 * 174.88841 * 16 15 12 19 19 C 1.52997 * 109.47613 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46989 * 179.97438 * 19 18 16 21 21 C 1.52998 * 109.47189 * 294.99786 * 20 19 18 22 22 C 1.53003 * 109.46823 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46950 * 60.00317 * 22 21 20 24 24 C 1.52997 * 109.47344 * 299.99811 * 23 22 21 25 25 C 1.52999 * 109.46706 * 175.00029 * 20 19 18 26 26 C 1.53044 * 109.53834 * 298.63945 * 12 11 10 27 27 C 1.46923 * 120.63139 * 211.69757 * 9 7 2 28 28 H 0.97000 * 119.99604 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.59041 * 6.58290 * 10 9 7 30 30 H 1.09005 * 109.70271 * 246.22608 * 10 9 7 31 31 H 1.09004 * 109.49787 * 294.68263 * 11 10 9 32 32 H 1.09004 * 109.49998 * 174.58824 * 11 10 9 33 33 H 1.09006 * 109.47215 * 300.76007 * 13 12 11 34 34 H 1.08997 * 109.47311 * 60.76016 * 13 12 11 35 35 H 0.96700 * 114.00162 * 179.97438 * 14 13 12 36 36 H 0.96992 * 120.00329 * 242.66104 * 15 12 11 37 37 H 1.09006 * 109.46783 * 59.99576 * 18 16 15 38 38 H 1.09000 * 109.46889 * 300.00367 * 18 16 15 39 39 H 1.09000 * 109.47333 * 300.00145 * 19 18 16 40 40 H 1.08998 * 109.46830 * 59.99637 * 19 18 16 41 41 H 1.08998 * 109.46886 * 55.00647 * 20 19 18 42 42 H 1.08995 * 109.47429 * 300.00066 * 21 20 19 43 43 H 1.09005 * 109.46695 * 60.00498 * 21 20 19 44 44 H 1.08995 * 109.47110 * 300.00185 * 22 21 20 45 45 H 1.09000 * 109.46937 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.46591 * 179.97438 * 23 22 21 47 47 H 1.08995 * 109.47321 * 59.99998 * 23 22 21 48 48 H 1.09005 * 109.46947 * 300.00452 * 24 23 22 49 49 H 1.08994 * 109.47373 * 180.02562 * 24 23 22 50 50 H 1.08998 * 109.47508 * 300.00409 * 25 20 19 51 51 H 1.09005 * 109.47468 * 60.00243 * 25 20 19 52 52 H 1.08995 * 109.49200 * 181.31512 * 26 12 11 53 53 H 1.09000 * 109.49422 * 301.40952 * 26 12 11 54 54 H 1.08995 * 109.58588 * 353.41719 * 27 9 7 55 55 H 1.09004 * 109.58724 * 113.84084 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0753 -1.2109 0.1786 9 7 1.3446 -2.3771 -0.2281 10 6 0.1682 -2.4126 -1.1076 11 6 0.3868 -3.4841 -2.1803 12 6 0.7069 -4.8193 -1.5043 13 6 0.8922 -5.8996 -2.5718 14 8 1.1736 -7.1501 -1.9402 15 7 -0.3971 -5.1941 -0.6171 16 6 -1.6232 -5.4243 -1.1272 17 8 -1.8357 -5.2316 -2.3056 18 6 -2.7301 -5.9210 -0.2334 19 6 -4.0085 -6.0985 -1.0551 20 6 -5.1321 -6.6034 -0.1476 21 6 -4.7835 -8.0020 0.3657 22 6 -5.9074 -8.5071 1.2726 23 6 -7.2148 -8.5659 0.4800 24 6 -7.5634 -7.1674 -0.0333 25 6 -6.4397 -6.6621 -0.9396 26 6 1.9940 -4.6839 -0.6875 27 6 1.7935 -3.6260 0.4022 28 1 -0.4849 0.8401 -0.0004 29 1 0.0379 -1.4405 -1.5832 30 1 -0.7198 -2.6557 -0.5239 31 1 1.2185 -3.1925 -2.8216 32 1 -0.5171 -3.5876 -2.7807 33 1 -0.0202 -5.9877 -3.1618 34 1 1.7218 -5.6272 -3.2242 35 1 1.3027 -7.8826 -2.5581 36 1 -0.2456 -5.2767 0.3374 37 1 -2.9074 -5.1970 0.5620 38 1 -2.4428 -6.8775 0.2034 39 1 -4.2956 -5.1418 -1.4915 40 1 -3.8314 -6.8222 -1.8506 41 1 -5.2493 -5.9249 0.6974 42 1 -4.6663 -8.6804 -0.4793 43 1 -3.8518 -7.9601 0.9300 44 1 -6.0250 -7.8288 2.1176 45 1 -5.6589 -9.5033 1.6387 46 1 -8.0154 -8.9263 1.1261 47 1 -7.0972 -9.2443 -0.3650 48 1 -7.6809 -6.4891 0.8118 49 1 -8.4950 -7.2092 -0.5976 50 1 -6.6881 -5.6658 -1.3054 51 1 -6.3226 -7.3406 -1.7847 52 1 2.2339 -5.6414 -0.2254 53 1 2.8105 -4.3809 -1.3429 54 1 2.7357 -3.4545 0.9227 55 1 1.0396 -3.9694 1.1106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485027683.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:51 Heat of formation + Delta-G solvation = -121.749178 kcal Electronic energy + Delta-G solvation = -31409.962612 eV Core-core repulsion = 27444.865486 eV Total energy + Delta-G solvation = -3965.097126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.50864 -39.78502 -38.82445 -37.42600 -35.60473 -34.74295 -33.61417 -32.20674 -31.61023 -31.47211 -30.00982 -28.34724 -25.68815 -25.44911 -23.94386 -23.45665 -22.71953 -21.98128 -21.06712 -20.58171 -20.13088 -18.83956 -18.22388 -17.88991 -16.90832 -16.64543 -16.42216 -16.19308 -15.84478 -15.47405 -15.28636 -15.17445 -14.96410 -14.86226 -14.76835 -14.56394 -14.35137 -14.16413 -13.73519 -13.44285 -13.32006 -13.20328 -12.97524 -12.91851 -12.71284 -12.59631 -12.50912 -12.41964 -12.25451 -12.04388 -12.00640 -11.94141 -11.84045 -11.63572 -11.42333 -11.28951 -11.26484 -11.03113 -10.86966 -10.76048 -10.54677 -10.29230 -9.84957 -8.61037 -7.86128 -5.37461 1.45985 1.48361 1.54723 1.83118 2.35662 2.50658 3.26800 3.33130 3.68427 3.72503 3.79674 3.82782 3.91238 4.03058 4.08688 4.18228 4.25194 4.29103 4.44713 4.48350 4.51529 4.53702 4.61245 4.62210 4.66398 4.70423 4.72425 4.74178 4.76843 4.84176 4.86013 4.99055 5.02191 5.05121 5.13960 5.17916 5.18971 5.21189 5.27287 5.31512 5.32255 5.38807 5.40591 5.46130 5.47052 5.55321 5.63798 5.67197 5.70175 5.78629 6.41161 6.75583 6.89824 7.15953 7.43819 7.85904 8.39298 9.19065 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.002795 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.483164 B =10015.656966 C =11325.030017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.607 5.607 10 C 0.198 3.802 11 C -0.139 4.139 12 C 0.194 3.806 13 C 0.076 3.924 14 O -0.572 6.572 15 N -0.702 5.702 16 C 0.510 3.490 17 O -0.580 6.580 18 C -0.134 4.134 19 C -0.088 4.088 20 C -0.082 4.082 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.117 4.117 27 C 0.142 3.858 28 H 0.248 0.752 29 H 0.043 0.957 30 H -0.005 1.005 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.392 0.608 36 H 0.404 0.596 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.054 0.946 51 H 0.059 0.941 52 H 0.089 0.911 53 H 0.068 0.932 54 H 0.059 0.941 55 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 -20.278 0.339 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.072 3.928 11 C -0.179 4.179 12 C 0.108 3.892 13 C -0.003 4.003 14 O -0.379 6.379 15 N -0.352 5.352 16 C 0.299 3.701 17 O -0.461 6.461 18 C -0.173 4.173 19 C -0.126 4.126 20 C -0.100 4.100 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.157 4.157 27 C 0.016 3.984 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.013 0.987 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.240 0.760 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.107 0.893 53 H 0.086 0.914 54 H 0.077 0.923 55 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.901 -19.657 0.065 21.578 hybrid contribution 0.409 1.156 -0.300 1.263 sum -8.492 -18.500 -0.235 20.358 Atomic orbital electron populations 1.70153 1.06691 1.25721 1.55498 1.25929 0.96124 1.01599 1.00866 0.85340 0.77496 0.79197 0.78369 1.20499 1.22255 1.19834 1.19472 0.91299 0.85200 1.43398 0.91519 1.44236 1.32587 1.04258 1.52006 1.20260 0.87526 0.95535 0.89433 1.22357 1.01075 0.95480 0.99014 1.20138 0.87097 0.91815 0.90195 1.22421 0.99554 0.84141 0.94185 1.86396 1.94211 1.18782 1.38533 1.45928 1.08841 1.69292 1.11176 1.21199 0.83877 0.76198 0.88872 1.90580 1.82864 1.53803 1.18835 1.21739 0.93170 1.03817 0.98607 1.21256 0.92939 1.00888 0.97548 1.21140 0.93841 0.97395 0.97666 1.21635 0.98687 0.95400 0.99448 1.21539 0.94731 1.01312 0.98076 1.21538 0.97512 0.96702 0.99869 1.21517 0.97792 0.97031 0.99230 1.21557 0.94560 1.00856 0.98286 1.22072 0.95349 0.99726 0.98525 1.21062 0.97754 0.86129 0.93408 0.94290 0.93838 0.98669 0.92550 0.91970 0.93170 0.92542 0.75958 0.75979 0.88620 0.86680 0.93539 0.92285 0.91239 0.92197 0.91311 0.92064 0.91350 0.91443 0.92131 0.92149 0.91656 0.92750 0.92208 0.89265 0.91364 0.92287 0.96030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 11.10 21.65 0.24 -55.89 16 2 C -0.05 -2.80 5.04 84.86 0.43 -2.37 16 3 Si 0.97 45.26 29.57 68.60 2.03 47.29 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.26 -14.46 9.57 84.03 0.80 -13.66 16 8 H 0.07 3.54 7.85 -2.91 -0.02 3.51 16 9 N -0.61 -30.29 2.98 -699.11 -2.09 -32.38 16 10 C 0.20 9.96 4.99 86.36 0.43 10.39 16 11 C -0.14 -5.78 4.71 30.67 0.14 -5.63 16 12 C 0.19 6.55 0.44 3.63 0.00 6.55 16 13 C 0.08 2.21 5.68 71.98 0.41 2.62 16 14 O -0.57 -13.98 12.84 -148.98 -1.91 -15.89 16 15 N -0.70 -22.15 3.98 -422.78 -1.68 -23.83 16 16 C 0.51 16.33 7.24 87.66 0.63 16.97 16 17 O -0.58 -22.23 12.24 -3.06 -0.04 -22.27 16 18 C -0.13 -3.16 5.46 29.85 0.16 -3.00 16 19 C -0.09 -2.08 3.97 30.59 0.12 -1.96 16 20 C -0.08 -1.51 2.19 -10.79 -0.02 -1.53 16 21 C -0.11 -1.78 4.96 30.59 0.15 -1.62 16 22 C -0.12 -1.61 5.92 30.60 0.18 -1.43 16 23 C -0.12 -1.57 5.92 30.59 0.18 -1.38 16 24 C -0.12 -1.75 5.92 30.58 0.18 -1.57 16 25 C -0.11 -2.04 5.20 30.58 0.16 -1.88 16 26 C -0.12 -3.85 4.85 30.67 0.15 -3.70 16 27 C 0.14 5.61 6.24 86.36 0.54 6.15 16 28 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.04 2.53 6.14 -2.39 -0.01 2.51 16 30 H 0.00 -0.26 7.74 -2.38 -0.02 -0.27 16 31 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.06 2.71 6.23 -2.39 -0.01 2.70 16 33 H 0.05 1.64 6.17 -2.38 -0.01 1.62 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.39 5.96 9.12 -74.06 -0.68 5.29 16 36 H 0.40 11.61 7.19 -92.71 -0.67 10.94 16 37 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.12 2.14 6.56 -2.39 -0.02 2.13 16 39 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 40 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.00 6.56 -2.38 -0.02 0.99 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 52 H 0.09 2.54 7.66 -2.39 -0.02 2.52 16 53 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 54 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 55 H 0.02 0.83 6.89 -2.39 -0.02 0.82 16 Total: -1.00 -68.60 406.88 0.73 -67.87 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.47 Total: 32.17 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.65 Total: 2.94 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.53 Total: -112.11 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.95 Total: -38.16 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -68.60 0.73 -67.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485027683.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.881 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds