Wall clock time and date at job start Tue Mar 31 2020 20:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21283 * 120.00222 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99772 * 359.97438 * 3 2 1 6 6 N 1.46506 * 109.46888 * 180.02562 * 5 3 2 7 7 C 1.34776 * 120.00027 * 180.02562 * 6 5 3 8 8 O 1.21593 * 120.00123 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00282 * 179.97438 * 7 6 5 10 10 C 1.47027 * 125.64527 * 359.69213 * 9 7 6 11 11 C 1.54318 * 107.27588 * 180.96702 * 10 9 7 12 12 C 1.55161 * 102.86196 * 22.52504 * 11 10 9 13 13 C 1.47422 * 125.65069 * 180.02562 * 9 7 6 14 14 C 1.46498 * 120.00239 * 179.71805 * 2 1 3 15 15 H 1.08996 * 109.47313 * 180.02562 * 14 2 1 16 16 C 1.52999 * 109.47138 * 300.00351 * 14 2 1 17 17 N 1.46491 * 109.47212 * 304.99765 * 16 14 2 18 18 C 1.36939 * 120.00036 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99871 * 0.02562 * 18 17 16 20 20 C 1.38820 * 120.00047 * 179.97438 * 18 17 16 21 21 N 1.31613 * 119.99593 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46779 * 60.00253 * 22 20 18 24 24 H 1.48497 * 109.47086 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47272 * 300.00287 * 22 20 18 26 26 C 1.53000 * 109.46911 * 60.00146 * 14 2 1 27 27 C 1.52996 * 117.50136 * 248.74864 * 26 14 2 28 28 C 1.52998 * 117.50113 * 180.08487 * 26 14 2 29 29 H 1.08999 * 109.46892 * 90.00594 * 1 2 3 30 30 H 1.09000 * 109.46803 * 209.99767 * 1 2 3 31 31 H 1.09000 * 109.47214 * 330.00561 * 1 2 3 32 32 H 1.08999 * 109.47685 * 300.00183 * 5 3 2 33 33 H 1.08997 * 109.47517 * 60.00530 * 5 3 2 34 34 H 0.96996 * 119.99691 * 359.97438 * 6 5 3 35 35 H 1.08996 * 109.88161 * 300.51107 * 10 9 7 36 36 H 1.09004 * 109.87977 * 61.67733 * 10 9 7 37 37 H 1.08994 * 110.92491 * 264.11397 * 11 10 9 38 38 H 1.09000 * 110.58924 * 140.78307 * 11 10 9 39 39 H 1.08990 * 111.00363 * 206.22812 * 12 11 10 40 40 H 1.09002 * 111.00187 * 82.37580 * 12 11 10 41 41 H 1.09005 * 110.36725 * 274.67402 * 13 9 7 42 42 H 1.08997 * 110.36696 * 36.88719 * 13 9 7 43 43 H 1.09001 * 109.46937 * 65.00085 * 16 14 2 44 44 H 1.09002 * 109.47161 * 184.99056 * 16 14 2 45 45 H 0.97005 * 120.00027 * 0.02562 * 17 16 14 46 46 H 0.96998 * 119.99561 * 180.02562 * 21 20 18 47 47 H 1.09000 * 115.54919 * 34.41628 * 26 14 2 48 48 H 1.09001 * 117.50144 * 359.97438 * 27 26 14 49 49 H 1.09006 * 117.50120 * 145.02075 * 27 26 14 50 50 H 1.09000 * 117.49997 * 214.98092 * 28 26 14 51 51 H 1.09004 * 117.49728 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 7 2.3374 3.5858 -0.0011 7 6 1.8881 4.8565 -0.0011 8 8 0.6926 5.0787 -0.0003 9 7 2.7638 5.8810 -0.0011 10 6 4.2287 5.7559 0.0055 11 6 4.8106 7.1850 0.0278 12 6 3.6435 8.0241 0.6120 13 6 2.4116 7.3125 -0.0006 14 6 2.1976 -1.2687 0.0062 15 1 3.2692 -1.0695 0.0057 16 6 1.8280 -2.0649 1.2594 17 7 2.0707 -1.2444 2.4485 18 6 1.8102 -1.7502 3.6941 19 1 1.4263 -2.7541 3.7998 20 6 2.0408 -0.9729 4.8209 21 7 2.5091 0.2503 4.6920 22 14 1.6862 -1.6631 6.5202 23 1 2.5144 -2.8751 6.7448 24 1 2.0135 -0.6419 7.5474 25 1 0.2483 -2.0208 6.6190 26 6 1.8280 -2.0771 -1.2391 27 6 1.0116 -3.3549 -1.0353 28 6 2.4915 -3.4442 -1.4165 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 0.7590 2.5298 -0.8908 33 1 0.7584 2.5303 0.8891 34 1 3.2910 3.4086 -0.0006 35 1 4.5501 5.2090 0.8918 36 1 4.5604 5.2366 -0.8937 37 1 5.0597 7.5196 -0.9792 38 1 5.6837 7.2333 0.6785 39 1 3.7021 9.0601 0.2787 40 1 3.6268 7.9656 1.7003 41 1 2.2398 7.6612 -1.0189 42 1 1.5275 7.4854 0.6131 43 1 0.7742 -2.3405 1.2170 44 1 2.4376 -2.9670 1.3096 45 1 2.4152 -0.3426 2.3534 46 1 2.6705 0.7933 5.4794 47 1 1.6318 -1.4925 -2.1379 48 1 0.7382 -3.6199 -0.0140 49 1 0.2786 -3.6112 -1.8002 50 1 2.7314 -3.7593 -2.4320 51 1 3.1910 -3.7680 -0.6457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485810774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:41 Heat of formation + Delta-G solvation = -8.400235 kcal Electronic energy + Delta-G solvation = -30471.398685 eV Core-core repulsion = 26407.676395 eV Total energy + Delta-G solvation = -4063.722291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43338 -39.77813 -37.99443 -37.37546 -35.06889 -34.28065 -34.02473 -31.76538 -31.13867 -29.29619 -28.67071 -27.12850 -26.23574 -24.30547 -23.39769 -22.56133 -21.92871 -21.40055 -20.15946 -19.96937 -18.70643 -18.21731 -17.11879 -16.81128 -16.62207 -16.19989 -15.85431 -15.53815 -15.16206 -14.79078 -14.45997 -14.22437 -14.10330 -13.75233 -13.40595 -13.36069 -13.12500 -12.93649 -12.86623 -12.80306 -12.53785 -12.26923 -12.09843 -11.94345 -11.57461 -11.53586 -11.44092 -11.30487 -11.05636 -10.99690 -10.79580 -10.75178 -10.37305 -10.16772 -10.12721 -9.81976 -9.70346 -9.50302 -9.11854 -8.86654 -8.56587 -8.33635 -6.91473 -5.74269 -3.03927 2.48466 2.84067 3.21585 3.26041 3.44035 3.48323 3.49762 3.94379 4.01997 4.35996 4.44790 4.56775 4.66055 4.68050 4.85632 5.05648 5.05981 5.11453 5.16161 5.29650 5.39790 5.41697 5.43891 5.48736 5.55494 5.59858 5.61236 5.63835 5.66310 5.74465 5.75506 5.83409 5.91885 5.92025 5.93929 6.05093 6.15423 6.24466 6.26524 6.36362 6.44602 6.45708 6.66140 6.90249 7.04863 7.62289 7.68753 7.98866 8.36919 8.43012 8.62949 9.54635 10.12179 10.47369 11.47675 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008833 B = 0.003363 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.187994 B = 8323.106991 C =10498.106296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.588 5.588 3 C 0.515 3.485 4 O -0.539 6.539 5 C 0.124 3.876 6 N -0.728 5.728 7 C 0.727 3.273 8 O -0.593 6.593 9 N -0.638 5.638 10 C 0.095 3.905 11 C -0.129 4.129 12 C -0.135 4.135 13 C 0.125 3.875 14 C 0.162 3.838 15 H 0.104 0.896 16 C 0.143 3.857 17 N -0.727 5.727 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.010 4.010 21 N -0.928 5.928 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.158 4.158 27 C -0.183 4.183 28 C -0.173 4.173 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.408 0.592 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 8.502 -15.313 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.320 5.320 3 C 0.303 3.697 4 O -0.417 6.417 5 C -0.004 4.004 6 N -0.386 5.386 7 C 0.428 3.572 8 O -0.472 6.472 9 N -0.377 5.377 10 C -0.028 4.028 11 C -0.167 4.167 12 C -0.173 4.173 13 C 0.002 3.998 14 C 0.058 3.942 15 H 0.122 0.878 16 C 0.014 3.986 17 N -0.372 5.372 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.207 4.207 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.177 4.177 27 C -0.220 4.220 28 C -0.211 4.211 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.245 0.755 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.220 0.780 46 H 0.065 0.935 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.107 0.893 50 H 0.109 0.891 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.371 8.469 -15.169 17.377 hybrid contribution 0.309 -0.283 1.018 1.101 sum 0.680 8.186 -14.151 16.362 Atomic orbital electron populations 1.21788 0.79304 1.04333 1.01007 1.47496 1.07111 1.05196 1.72201 1.20343 0.87991 0.85427 0.75984 1.90667 1.13727 1.86883 1.50421 1.20916 0.91546 0.83481 1.04481 1.44726 1.10953 1.03294 1.79648 1.15254 0.84270 0.79786 0.77848 1.90916 1.13572 1.83877 1.58812 1.47494 1.05860 1.05618 1.78713 1.22052 0.80316 0.98383 1.02060 1.22598 0.98330 0.93714 1.02047 1.22813 0.94127 0.99134 1.01256 1.22047 0.98257 0.78711 1.00763 1.20856 0.97885 0.82204 0.93208 0.87793 1.21119 0.97813 0.93564 0.86081 1.42284 1.78834 1.15689 1.00360 1.19138 1.36611 0.98049 0.83631 0.91352 1.24738 1.01918 0.96276 0.97751 1.69668 1.50728 1.08580 1.28651 0.86293 0.77910 0.77719 0.84378 1.21305 1.21717 1.21296 1.22558 1.05666 0.90087 0.99437 1.23196 0.93979 1.01387 1.03407 1.22957 0.96182 0.99492 1.02461 0.92902 0.90040 0.91007 0.88922 0.88086 0.75465 0.91100 0.91495 0.90513 0.89860 0.89748 0.90387 0.91792 0.90320 0.95547 0.95422 0.78036 0.93501 0.87921 0.87488 0.89256 0.89066 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 9.61 59.85 0.58 1.62 16 2 N -0.59 -9.47 2.25 -173.93 -0.39 -9.86 16 3 C 0.52 8.97 7.43 -10.99 -0.08 8.89 16 4 O -0.54 -10.88 14.99 5.55 0.08 -10.80 16 5 C 0.12 1.92 4.71 -5.19 -0.02 1.90 16 6 N -0.73 -11.43 5.49 -66.41 -0.36 -11.80 16 7 C 0.73 11.83 8.49 -86.92 -0.74 11.09 16 8 O -0.59 -11.42 16.60 5.28 0.09 -11.34 16 9 N -0.64 -8.23 3.33 -176.25 -0.59 -8.82 16 10 C 0.10 0.95 6.14 -3.06 -0.02 0.94 16 11 C -0.13 -0.92 6.95 -24.90 -0.17 -1.09 16 12 C -0.14 -1.00 7.08 -24.59 -0.17 -1.18 16 13 C 0.13 1.30 6.91 -2.54 -0.02 1.28 16 14 C 0.16 2.71 2.59 -67.93 -0.18 2.53 16 15 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 16 C 0.14 2.79 4.14 -4.05 -0.02 2.77 16 17 N -0.73 -18.44 5.43 -59.91 -0.33 -18.76 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 C -0.16 -2.06 5.48 -90.62 -0.50 -2.56 16 27 C -0.18 -2.14 9.59 -26.69 -0.26 -2.40 16 28 C -0.17 -2.05 9.94 -26.69 -0.27 -2.31 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.15 6.53 -51.93 -0.34 0.81 16 31 H 0.07 0.93 6.44 -51.93 -0.33 0.60 16 32 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 33 H 0.10 1.68 7.40 -51.93 -0.38 1.30 16 34 H 0.41 6.28 6.42 -40.82 -0.26 6.02 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 43 H 0.03 0.51 5.34 -51.93 -0.28 0.23 16 44 H 0.03 0.56 7.44 -51.93 -0.39 0.17 16 45 H 0.39 10.64 7.05 -40.82 -0.29 10.35 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.11 1.38 5.80 -51.93 -0.30 1.08 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.10 1.24 7.65 -51.93 -0.40 0.84 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -35.24 405.39 -10.16 -45.40 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -8.36 Total: 15.94 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -2.11 Total: 14.14 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -0.94 Total: -77.02 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.17 Total: -22.13 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.24 -10.16 -45.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485810774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.996 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds