Wall clock time and date at job start Tue Mar 31 2020 20:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21283 * 120.00222 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99772 * 359.97438 * 3 2 1 6 6 N 1.46506 * 109.46888 * 180.02562 * 5 3 2 7 7 C 1.34776 * 120.00027 * 180.02562 * 6 5 3 8 8 O 1.21593 * 120.00123 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00282 * 179.97438 * 7 6 5 10 10 C 1.47027 * 125.64527 * 359.69213 * 9 7 6 11 11 C 1.54318 * 107.27588 * 180.96702 * 10 9 7 12 12 C 1.55161 * 102.86196 * 22.52504 * 11 10 9 13 13 C 1.47422 * 125.65069 * 180.02562 * 9 7 6 14 14 C 1.46498 * 120.00239 * 179.71805 * 2 1 3 15 15 H 1.08996 * 109.47313 * 180.02562 * 14 2 1 16 16 C 1.52999 * 109.47138 * 300.00351 * 14 2 1 17 17 N 1.46491 * 109.47212 * 304.99765 * 16 14 2 18 18 C 1.36939 * 120.00036 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99871 * 0.02562 * 18 17 16 20 20 C 1.38820 * 120.00047 * 179.97438 * 18 17 16 21 21 N 1.31613 * 119.99593 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46779 * 60.00253 * 22 20 18 24 24 H 1.48497 * 109.47086 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47272 * 300.00287 * 22 20 18 26 26 C 1.53000 * 109.46911 * 60.00146 * 14 2 1 27 27 C 1.52996 * 117.50136 * 248.74864 * 26 14 2 28 28 C 1.52998 * 117.50113 * 180.08487 * 26 14 2 29 29 H 1.08999 * 109.46892 * 90.00594 * 1 2 3 30 30 H 1.09000 * 109.46803 * 209.99767 * 1 2 3 31 31 H 1.09000 * 109.47214 * 330.00561 * 1 2 3 32 32 H 1.08999 * 109.47685 * 300.00183 * 5 3 2 33 33 H 1.08997 * 109.47517 * 60.00530 * 5 3 2 34 34 H 0.96996 * 119.99691 * 359.97438 * 6 5 3 35 35 H 1.08996 * 109.88161 * 300.51107 * 10 9 7 36 36 H 1.09004 * 109.87977 * 61.67733 * 10 9 7 37 37 H 1.08994 * 110.92491 * 264.11397 * 11 10 9 38 38 H 1.09000 * 110.58924 * 140.78307 * 11 10 9 39 39 H 1.08990 * 111.00363 * 206.22812 * 12 11 10 40 40 H 1.09002 * 111.00187 * 82.37580 * 12 11 10 41 41 H 1.09005 * 110.36725 * 274.67402 * 13 9 7 42 42 H 1.08997 * 110.36696 * 36.88719 * 13 9 7 43 43 H 1.09001 * 109.46937 * 65.00085 * 16 14 2 44 44 H 1.09002 * 109.47161 * 184.99056 * 16 14 2 45 45 H 0.97005 * 120.00027 * 0.02562 * 17 16 14 46 46 H 0.96998 * 119.99561 * 180.02562 * 21 20 18 47 47 H 1.09000 * 115.54919 * 34.41628 * 26 14 2 48 48 H 1.09001 * 117.50144 * 359.97438 * 27 26 14 49 49 H 1.09006 * 117.50120 * 145.02075 * 27 26 14 50 50 H 1.09000 * 117.49997 * 214.98092 * 28 26 14 51 51 H 1.09004 * 117.49728 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 7 2.3374 3.5858 -0.0011 7 6 1.8881 4.8565 -0.0011 8 8 0.6926 5.0787 -0.0003 9 7 2.7638 5.8810 -0.0011 10 6 4.2287 5.7559 0.0055 11 6 4.8106 7.1850 0.0278 12 6 3.6435 8.0241 0.6120 13 6 2.4116 7.3125 -0.0006 14 6 2.1976 -1.2687 0.0062 15 1 3.2692 -1.0695 0.0057 16 6 1.8280 -2.0649 1.2594 17 7 2.0707 -1.2444 2.4485 18 6 1.8102 -1.7502 3.6941 19 1 1.4263 -2.7541 3.7998 20 6 2.0408 -0.9729 4.8209 21 7 2.5091 0.2503 4.6920 22 14 1.6862 -1.6631 6.5202 23 1 2.5144 -2.8751 6.7448 24 1 2.0135 -0.6419 7.5474 25 1 0.2483 -2.0208 6.6190 26 6 1.8280 -2.0771 -1.2391 27 6 1.0116 -3.3549 -1.0353 28 6 2.4915 -3.4442 -1.4165 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 0.7590 2.5298 -0.8908 33 1 0.7584 2.5303 0.8891 34 1 3.2910 3.4086 -0.0006 35 1 4.5501 5.2090 0.8918 36 1 4.5604 5.2366 -0.8937 37 1 5.0597 7.5196 -0.9792 38 1 5.6837 7.2333 0.6785 39 1 3.7021 9.0601 0.2787 40 1 3.6268 7.9656 1.7003 41 1 2.2398 7.6612 -1.0189 42 1 1.5275 7.4854 0.6131 43 1 0.7742 -2.3405 1.2170 44 1 2.4376 -2.9670 1.3096 45 1 2.4152 -0.3426 2.3534 46 1 2.6705 0.7933 5.4794 47 1 1.6318 -1.4925 -2.1379 48 1 0.7382 -3.6199 -0.0140 49 1 0.2786 -3.6112 -1.8002 50 1 2.7314 -3.7593 -2.4320 51 1 3.1910 -3.7680 -0.6457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485810774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:39 Heat of formation + Delta-G solvation = -32.502440 kcal Electronic energy + Delta-G solvation = -30472.443836 eV Core-core repulsion = 26407.676395 eV Total energy + Delta-G solvation = -4064.767441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.68302 -40.99618 -39.17184 -38.44014 -36.44591 -35.82941 -35.58906 -33.17195 -32.60943 -30.39631 -29.87122 -28.37453 -27.64381 -25.96011 -24.44648 -24.01005 -23.08566 -22.10142 -21.38501 -21.13695 -20.06168 -19.37303 -19.06879 -18.07646 -17.66370 -17.50346 -17.15266 -16.73222 -16.57858 -16.15240 -15.94926 -15.55237 -15.28351 -15.03176 -14.70442 -14.55462 -14.42784 -14.24240 -14.02770 -13.96547 -13.66977 -13.59337 -13.22929 -13.14304 -13.05624 -12.90696 -12.70944 -12.37454 -12.23356 -12.21790 -12.15479 -12.02632 -11.77844 -11.60568 -11.49609 -11.39350 -11.02474 -10.97645 -10.73937 -10.41170 -9.65583 -9.58442 -9.01273 -7.95135 -5.24885 1.33651 1.44578 1.47419 1.47863 1.53904 1.97457 2.02600 2.53867 2.91589 2.95983 3.35181 3.38189 3.66542 3.68414 3.71385 3.92843 4.05906 4.10342 4.14768 4.20520 4.21621 4.25924 4.29362 4.36074 4.43658 4.47583 4.60249 4.62013 4.76707 4.83667 4.84728 4.87733 4.91206 4.98028 4.98890 5.06992 5.10799 5.12894 5.19839 5.23047 5.25385 5.34916 5.35548 5.46351 5.57019 5.92748 6.24060 6.31350 6.80023 7.01382 7.31311 7.38545 8.06933 8.30075 9.27521 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008833 B = 0.003363 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.187994 B = 8323.106991 C =10498.106296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.587 5.587 3 C 0.510 3.490 4 O -0.575 6.575 5 C 0.131 3.869 6 N -0.729 5.729 7 C 0.718 3.282 8 O -0.630 6.630 9 N -0.639 5.639 10 C 0.087 3.913 11 C -0.119 4.119 12 C -0.125 4.125 13 C 0.115 3.885 14 C 0.170 3.830 15 H 0.072 0.928 16 C 0.144 3.856 17 N -0.741 5.741 18 C -0.244 4.244 19 H 0.078 0.922 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.275 1.275 26 C -0.162 4.162 27 C -0.169 4.169 28 C -0.170 4.170 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.408 0.592 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.028 0.972 45 H 0.371 0.629 46 H 0.248 0.752 47 H 0.118 0.882 48 H 0.093 0.907 49 H 0.116 0.884 50 H 0.115 0.885 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 8.097 -16.766 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.317 5.317 3 C 0.298 3.702 4 O -0.455 6.455 5 C 0.003 3.997 6 N -0.387 5.387 7 C 0.420 3.580 8 O -0.511 6.511 9 N -0.377 5.377 10 C -0.036 4.036 11 C -0.157 4.157 12 C -0.163 4.163 13 C -0.007 4.007 14 C 0.066 3.934 15 H 0.090 0.910 16 C 0.017 3.983 17 N -0.383 5.383 18 C -0.376 4.376 19 H 0.096 0.904 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.201 1.201 26 C -0.182 4.182 27 C -0.206 4.206 28 C -0.207 4.207 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.246 0.754 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.136 0.864 48 H 0.111 0.889 49 H 0.134 0.866 50 H 0.134 0.866 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.076 8.023 -16.652 18.484 hybrid contribution 0.455 -0.218 1.423 1.510 sum 0.379 7.805 -15.228 17.116 Atomic orbital electron populations 1.21993 0.77400 1.03991 1.03349 1.47600 1.08289 1.04605 1.71249 1.20660 0.87697 0.86293 0.75553 1.90641 1.15222 1.87419 1.52210 1.20869 0.91304 0.82621 1.04859 1.44739 1.10949 1.03381 1.79592 1.15473 0.84309 0.80335 0.77893 1.90872 1.15175 1.84453 1.60649 1.47679 1.06828 1.05930 1.77252 1.22281 0.78716 1.00744 1.01834 1.22623 0.98325 0.91163 1.03546 1.22808 0.92440 1.00348 1.00706 1.22307 0.99184 0.77653 1.01538 1.20635 0.96312 0.82663 0.93793 0.90975 1.21287 0.98437 0.93149 0.85423 1.42494 1.78743 1.15609 1.01486 1.19583 1.35019 0.98226 0.84783 0.90404 1.25567 1.02737 0.96689 1.01611 1.69854 1.52830 1.10072 1.29085 0.85223 0.78203 0.76862 0.79524 1.20428 1.22522 1.20079 1.22391 1.07511 0.90381 0.97902 1.23217 0.94455 0.99433 1.03480 1.23048 0.96149 0.98046 1.03467 0.89128 0.90674 0.91056 0.86563 0.89455 0.75419 0.92334 0.90812 0.88614 0.88386 0.86828 0.91086 0.90508 0.92096 0.93947 0.95464 0.79755 0.94291 0.86434 0.88884 0.86564 0.86649 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.90 9.61 127.77 1.23 3.12 16 2 N -0.59 -18.89 2.25 -822.59 -1.85 -20.74 16 3 C 0.51 18.27 7.43 87.66 0.65 18.92 16 4 O -0.57 -24.23 14.99 -3.04 -0.05 -24.28 16 5 C 0.13 4.20 4.71 85.63 0.40 4.60 16 6 N -0.73 -23.79 5.49 -482.29 -2.65 -26.43 16 7 C 0.72 24.13 8.49 179.06 1.52 25.65 16 8 O -0.63 -25.03 16.60 -4.01 -0.07 -25.09 16 9 N -0.64 -16.69 3.33 -829.80 -2.76 -19.45 16 10 C 0.09 1.71 6.14 86.73 0.53 2.24 16 11 C -0.12 -1.45 6.95 31.78 0.22 -1.22 16 12 C -0.13 -1.63 7.08 31.98 0.23 -1.41 16 13 C 0.12 2.35 6.91 86.85 0.60 2.95 16 14 C 0.17 5.69 2.59 44.99 0.12 5.80 16 15 H 0.07 2.89 6.90 -2.39 -0.02 2.88 16 16 C 0.14 5.64 4.14 86.38 0.36 5.99 16 17 N -0.74 -38.29 5.43 -343.46 -1.87 -40.16 16 18 C -0.24 -13.75 9.99 84.04 0.84 -12.91 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.97 -61.17 13.06 21.65 0.28 -60.89 16 22 Si 0.97 46.89 29.55 68.60 2.03 48.91 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 C -0.16 -3.94 5.48 -10.80 -0.06 -4.00 16 27 C -0.17 -3.49 9.59 30.62 0.29 -3.19 16 28 C -0.17 -3.64 9.94 30.62 0.30 -3.33 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 2.01 6.53 -2.39 -0.02 2.00 16 31 H 0.07 1.83 6.44 -2.39 -0.02 1.81 16 32 H 0.12 3.11 8.11 -2.39 -0.02 3.10 16 33 H 0.09 3.05 7.40 -2.39 -0.02 3.03 16 34 H 0.41 13.19 6.42 -92.71 -0.60 12.60 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.06 1.44 8.03 -2.39 -0.02 1.43 16 43 H 0.04 1.56 5.34 -2.39 -0.01 1.55 16 44 H 0.03 1.09 7.44 -2.39 -0.02 1.07 16 45 H 0.37 21.21 7.05 -92.70 -0.65 20.56 16 46 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.09 2.21 5.80 -2.39 -0.01 2.19 16 49 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 50 H 0.12 1.94 8.14 -2.39 -0.02 1.93 16 51 H 0.08 2.05 7.65 -2.38 -0.02 2.04 16 Total: -1.00 -78.81 405.39 0.48 -78.34 By element: Atomic # 1 Polarization: 50.72 SS G_CDS: -0.30 Total: 50.42 kcal Atomic # 6 Polarization: 31.67 SS G_CDS: 7.70 Total: 39.37 kcal Atomic # 7 Polarization: -158.83 SS G_CDS: -8.84 Total: -167.67 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.11 Total: -49.37 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -78.81 0.48 -78.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485810774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.833 kcal (2) G-P(sol) polarization free energy of solvation -78.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds