Wall clock time and date at job start Tue Mar 31 2020 21:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 8 8 N 1.46499 * 109.47053 * 185.00474 * 7 5 2 9 9 C 1.36942 * 119.99744 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31611 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99797 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47416 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46979 * 120.00071 * 13 11 9 16 16 H 1.48501 * 109.47035 * 239.99631 * 13 11 9 17 17 N 1.46505 * 109.47266 * 300.00318 * 5 2 1 18 18 C 1.34767 * 119.99959 * 274.99643 * 17 5 2 19 19 O 1.21545 * 120.00346 * 359.97438 * 18 17 5 20 20 C 1.47999 * 120.00111 * 179.97438 * 18 17 5 21 21 N 1.34191 * 126.69788 * 0.02562 * 20 18 17 22 22 N 1.28986 * 107.25328 * 179.97438 * 21 20 18 23 23 N 1.28719 * 108.98727 * 0.02562 * 22 21 20 24 24 C 1.46501 * 125.32076 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47175 * 359.97283 * 24 23 22 26 26 C 1.52997 * 109.47407 * 119.97519 * 24 23 22 27 27 C 1.53003 * 109.47071 * 239.97681 * 24 23 22 28 28 N 1.28866 * 109.35908 * 359.76405 * 23 22 21 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.09005 * 109.46600 * 305.00222 * 7 5 2 39 39 H 1.09001 * 109.47164 * 64.99887 * 7 5 2 40 40 H 0.96996 * 120.00184 * 359.97438 * 8 7 5 41 41 H 0.96998 * 120.00172 * 179.97438 * 12 11 9 42 42 H 0.96998 * 119.99791 * 94.99814 * 17 5 2 43 43 H 1.09006 * 109.46893 * 60.00372 * 25 24 23 44 44 H 1.08998 * 109.47239 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.47023 * 300.00505 * 25 24 23 46 46 H 1.09002 * 109.47301 * 59.99913 * 26 24 23 47 47 H 1.08998 * 109.47449 * 180.02562 * 26 24 23 48 48 H 1.09000 * 109.46855 * 300.00232 * 26 24 23 49 49 H 1.08992 * 109.46946 * 59.99777 * 27 24 23 50 50 H 1.08998 * 109.46965 * 179.97438 * 27 24 23 51 51 H 1.09002 * 109.46855 * 299.99608 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5300 0.0000 -2.4985 8 7 1.9175 -0.7566 -3.6916 9 6 1.5689 -0.3004 -4.9348 10 1 1.0079 0.6170 -5.0357 11 6 1.9365 -1.0171 -6.0654 12 7 2.6205 -2.1347 -5.9425 13 14 1.4603 -0.3951 -7.7612 14 1 0.6994 0.8731 -7.6277 15 1 2.6871 -0.1549 -8.5628 16 1 0.6154 -1.4095 -8.4412 17 7 1.5516 -2.1025 -1.2492 18 6 2.2284 -3.0565 -0.5798 19 8 3.2442 -2.7712 0.0236 20 6 1.7348 -4.4518 -0.5794 21 7 0.6365 -4.9140 -1.1965 22 7 0.5627 -6.1780 -0.9502 23 7 1.5599 -6.5197 -0.2115 24 6 1.8254 -7.8742 0.2794 25 6 0.7330 -8.8214 -0.2211 26 6 3.1859 -8.3464 -0.2372 27 6 1.8345 -7.8695 1.8094 28 7 2.2912 -5.4851 0.0241 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 0.4437 0.0782 -2.4548 39 1 1.9647 0.9986 -2.5444 40 1 2.4217 -1.5804 -3.6010 41 1 2.8771 -2.6358 -6.7324 42 1 0.7412 -2.3303 -1.7311 43 1 0.7266 -8.8248 -1.3112 44 1 0.9308 -9.8292 0.1438 45 1 -0.2362 -8.4849 0.1469 46 1 3.9641 -7.6717 0.1194 47 1 3.3832 -9.3544 0.1277 48 1 3.1794 -8.3498 -1.3272 49 1 0.8653 -7.5331 2.1774 50 1 2.0316 -8.8773 2.1747 51 1 2.6127 -7.1947 2.1660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486399353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:41 Heat of formation + Delta-G solvation = 95.287562 kcal Electronic energy + Delta-G solvation = -30988.746745 eV Core-core repulsion = 26961.813446 eV Total energy + Delta-G solvation = -4026.933299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.36935 -40.03359 -37.94158 -37.30674 -34.41140 -33.65925 -33.18929 -32.30898 -30.98674 -28.09514 -27.98140 -27.78748 -27.09068 -26.89217 -25.06776 -24.46570 -23.54860 -21.50776 -20.97357 -20.56759 -18.61547 -17.94885 -17.37933 -17.08552 -16.62774 -15.94382 -15.50640 -14.81790 -14.63200 -14.53400 -14.20546 -13.91550 -13.85936 -13.72907 -13.42742 -13.31396 -13.08328 -12.92217 -12.78928 -12.66887 -12.27470 -12.22554 -12.17676 -11.96048 -11.88815 -11.76738 -11.52990 -11.34448 -11.20441 -11.09441 -11.00338 -10.95367 -10.79879 -10.71564 -10.53948 -10.27754 -10.18338 -9.98361 -9.89876 -9.71040 -8.86429 -8.65291 -6.90521 -5.73351 -3.03029 1.08408 1.60915 1.63411 3.03637 3.35424 3.45692 3.50972 3.53445 3.83254 4.09877 4.17563 4.22341 4.59061 4.62816 4.95552 4.97990 4.99387 5.03334 5.06133 5.16289 5.17728 5.22875 5.23165 5.36281 5.52053 5.58040 5.58965 5.61982 5.67592 5.72134 5.81837 5.82952 5.91758 5.94464 6.06393 6.09768 6.11232 6.16069 6.18724 6.33715 6.46066 6.48315 6.51352 6.64593 6.73994 6.92199 7.70179 7.72649 8.23984 8.38601 8.44039 9.55902 10.11982 10.46800 11.49016 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.009204 B = 0.003692 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.381327 B = 7581.297312 C = 9900.816096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.131 4.131 5 C 0.150 3.850 6 H 0.091 0.909 7 C 0.142 3.858 8 N -0.732 5.732 9 C -0.240 4.240 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.682 5.682 18 C 0.617 3.383 19 O -0.513 6.513 20 C 0.132 3.868 21 N -0.248 5.248 22 N -0.058 5.058 23 N -0.129 5.129 24 C 0.177 3.823 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.159 4.159 28 N -0.249 5.249 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.414 0.586 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 -10.673 18.275 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.189 4.189 5 C 0.046 3.954 6 H 0.109 0.891 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.372 4.372 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.220 1.220 16 H -0.219 1.219 17 N -0.333 5.333 18 C 0.396 3.604 19 O -0.386 6.386 20 C -0.152 4.152 21 N -0.123 5.123 22 N -0.051 5.051 23 N -0.044 5.044 24 C 0.097 3.903 25 C -0.211 4.211 26 C -0.220 4.220 27 C -0.217 4.217 28 N -0.102 5.102 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.251 0.749 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.109 0.891 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.963 -10.842 18.435 21.591 hybrid contribution -0.143 0.139 -1.213 1.229 sum -3.106 -10.703 17.222 20.513 Atomic orbital electron populations 1.21933 0.94516 1.01830 1.01770 1.20916 0.96032 0.95747 0.95143 1.21881 1.01239 0.94758 1.01904 1.21906 1.01728 0.99523 0.95719 1.21437 1.00061 0.78986 0.94950 0.89061 1.21114 0.97630 0.94691 0.85159 1.42367 1.66974 1.27768 1.00527 1.19239 1.28901 1.05491 0.83521 0.91057 1.24739 1.00865 0.97340 0.97814 1.69680 1.43267 1.16529 1.28316 0.86134 0.77546 0.77805 0.84784 1.20538 1.21953 1.21914 1.45666 1.28976 1.08003 1.50689 1.16024 0.83577 0.80525 0.80230 1.90823 1.23713 1.80523 1.43540 1.25419 0.93209 0.97288 0.99332 1.76204 1.17101 1.00461 1.18519 1.78886 1.09849 1.07992 1.08338 1.50701 1.13478 1.09925 1.30262 1.21463 0.99009 0.73701 0.96163 1.22104 0.97365 0.98165 1.03491 1.22266 0.93935 1.03040 1.02731 1.22245 1.04166 1.04568 0.90759 1.74945 1.20013 0.93788 1.21417 0.91706 0.93095 0.92799 0.92806 0.92463 0.91767 0.93209 0.91814 0.93743 0.95113 0.94356 0.78065 0.93614 0.74936 0.90370 0.89219 0.90528 0.90191 0.89100 0.91111 0.91365 0.89093 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.97 37.16 0.30 -1.55 16 2 C -0.08 -1.07 0.62 -154.51 -0.10 -1.17 16 3 C -0.14 -1.76 8.12 37.15 0.30 -1.46 16 4 C -0.13 -1.87 7.00 37.16 0.26 -1.61 16 5 C 0.15 2.56 1.69 -67.93 -0.11 2.44 16 6 H 0.09 1.73 7.57 -51.93 -0.39 1.34 16 7 C 0.14 2.75 5.10 -4.04 -0.02 2.73 16 8 N -0.73 -18.32 5.43 -59.90 -0.33 -18.64 16 9 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 10 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 11 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 13 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 N -0.68 -11.91 3.64 -54.70 -0.20 -12.11 16 18 C 0.62 11.30 6.19 -12.26 -0.08 11.22 16 19 O -0.51 -10.17 14.22 5.33 0.08 -10.09 16 20 C 0.13 2.33 8.14 -156.24 -1.27 1.06 16 21 N -0.25 -4.35 12.26 32.10 0.39 -3.96 16 22 N -0.06 -0.89 12.21 60.35 0.74 -0.15 16 23 N -0.13 -1.73 3.72 0.52 0.00 -1.73 16 24 C 0.18 1.51 1.30 -131.82 -0.17 1.34 16 25 C -0.15 -1.00 7.90 37.16 0.29 -0.70 16 26 C -0.16 -1.21 8.66 37.16 0.32 -0.89 16 27 C -0.16 -1.05 8.66 37.16 0.32 -0.73 16 28 N -0.25 -3.98 11.85 32.11 0.38 -3.60 16 29 H 0.06 0.85 6.32 -51.93 -0.33 0.52 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.72 7.60 -51.93 -0.39 0.32 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 35 H 0.05 0.77 5.77 -51.93 -0.30 0.47 16 36 H 0.06 0.98 7.53 -51.93 -0.39 0.59 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.03 0.58 6.17 -51.93 -0.32 0.26 16 39 H 0.04 0.74 6.71 -51.93 -0.35 0.39 16 40 H 0.39 10.44 7.33 -40.82 -0.30 10.14 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.41 7.35 8.35 -40.82 -0.34 7.00 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -33.63 405.99 -5.81 -39.44 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -8.50 Total: 11.53 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.20 Total: 3.44 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: 1.71 Total: -67.99 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.63 -5.81 -39.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486399353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.732 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds