Wall clock time and date at job start Tue Mar 31 2020 21:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 8 8 N 1.46499 * 109.47053 * 185.00474 * 7 5 2 9 9 C 1.36942 * 119.99744 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31611 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99797 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47416 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46979 * 120.00071 * 13 11 9 16 16 H 1.48501 * 109.47035 * 239.99631 * 13 11 9 17 17 N 1.46505 * 109.47266 * 300.00318 * 5 2 1 18 18 C 1.34767 * 119.99959 * 274.99643 * 17 5 2 19 19 O 1.21545 * 120.00346 * 359.97438 * 18 17 5 20 20 C 1.47999 * 120.00111 * 179.97438 * 18 17 5 21 21 N 1.34191 * 126.69788 * 0.02562 * 20 18 17 22 22 N 1.28986 * 107.25328 * 179.97438 * 21 20 18 23 23 N 1.28719 * 108.98727 * 0.02562 * 22 21 20 24 24 C 1.46501 * 125.32076 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47175 * 359.97283 * 24 23 22 26 26 C 1.52997 * 109.47407 * 119.97519 * 24 23 22 27 27 C 1.53003 * 109.47071 * 239.97681 * 24 23 22 28 28 N 1.28866 * 109.35908 * 359.76405 * 23 22 21 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.09005 * 109.46600 * 305.00222 * 7 5 2 39 39 H 1.09001 * 109.47164 * 64.99887 * 7 5 2 40 40 H 0.96996 * 120.00184 * 359.97438 * 8 7 5 41 41 H 0.96998 * 120.00172 * 179.97438 * 12 11 9 42 42 H 0.96998 * 119.99791 * 94.99814 * 17 5 2 43 43 H 1.09006 * 109.46893 * 60.00372 * 25 24 23 44 44 H 1.08998 * 109.47239 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.47023 * 300.00505 * 25 24 23 46 46 H 1.09002 * 109.47301 * 59.99913 * 26 24 23 47 47 H 1.08998 * 109.47449 * 180.02562 * 26 24 23 48 48 H 1.09000 * 109.46855 * 300.00232 * 26 24 23 49 49 H 1.08992 * 109.46946 * 59.99777 * 27 24 23 50 50 H 1.08998 * 109.46965 * 179.97438 * 27 24 23 51 51 H 1.09002 * 109.46855 * 299.99608 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5300 0.0000 -2.4985 8 7 1.9175 -0.7566 -3.6916 9 6 1.5689 -0.3004 -4.9348 10 1 1.0079 0.6170 -5.0357 11 6 1.9365 -1.0171 -6.0654 12 7 2.6205 -2.1347 -5.9425 13 14 1.4603 -0.3951 -7.7612 14 1 0.6994 0.8731 -7.6277 15 1 2.6871 -0.1549 -8.5628 16 1 0.6154 -1.4095 -8.4412 17 7 1.5516 -2.1025 -1.2492 18 6 2.2284 -3.0565 -0.5798 19 8 3.2442 -2.7712 0.0236 20 6 1.7348 -4.4518 -0.5794 21 7 0.6365 -4.9140 -1.1965 22 7 0.5627 -6.1780 -0.9502 23 7 1.5599 -6.5197 -0.2115 24 6 1.8254 -7.8742 0.2794 25 6 0.7330 -8.8214 -0.2211 26 6 3.1859 -8.3464 -0.2372 27 6 1.8345 -7.8695 1.8094 28 7 2.2912 -5.4851 0.0241 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 0.4437 0.0782 -2.4548 39 1 1.9647 0.9986 -2.5444 40 1 2.4217 -1.5804 -3.6010 41 1 2.8771 -2.6358 -6.7324 42 1 0.7412 -2.3303 -1.7311 43 1 0.7266 -8.8248 -1.3112 44 1 0.9308 -9.8292 0.1438 45 1 -0.2362 -8.4849 0.1469 46 1 3.9641 -7.6717 0.1194 47 1 3.3832 -9.3544 0.1277 48 1 3.1794 -8.3498 -1.3272 49 1 0.8653 -7.5331 2.1774 50 1 2.0316 -8.8773 2.1747 51 1 2.6127 -7.1947 2.1660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486399353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:39 Heat of formation + Delta-G solvation = 71.807941 kcal Electronic energy + Delta-G solvation = -30989.764898 eV Core-core repulsion = 26961.813446 eV Total energy + Delta-G solvation = -4027.951452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -45.58579 -41.43463 -38.91866 -38.50686 -36.19393 -34.98289 -34.55718 -33.53147 -32.89643 -29.51345 -28.64788 -28.54814 -28.15143 -27.99491 -26.50194 -25.62508 -25.31856 -23.13615 -22.24509 -21.64714 -19.92366 -19.47751 -18.66660 -18.54840 -17.70944 -17.39508 -16.95795 -16.49893 -15.73992 -15.46210 -15.40467 -15.27327 -15.14365 -15.07273 -14.83724 -14.61637 -14.20607 -14.05513 -13.73249 -13.49025 -13.28672 -13.23434 -13.09722 -13.02489 -12.92670 -12.86611 -12.76254 -12.65258 -12.54220 -12.37286 -12.34456 -12.18171 -12.12428 -12.08776 -12.02483 -11.76473 -11.69021 -11.44869 -11.42248 -11.30444 -10.92458 -10.06647 -8.98106 -7.92535 -5.21937 -0.15193 0.27666 0.66648 1.48496 1.49153 1.59258 1.71650 1.94165 2.57054 2.83099 2.95812 3.42529 3.47591 3.55491 3.61700 3.64298 3.80702 4.00902 4.03760 4.24516 4.30112 4.31717 4.40540 4.44182 4.51226 4.58145 4.59647 4.62865 4.70949 4.71508 4.82206 4.85528 4.88026 4.97226 5.00429 5.06900 5.09033 5.09689 5.14886 5.18207 5.20551 5.24573 5.29140 5.36917 5.51570 5.55684 5.58988 6.25534 6.27725 6.86324 7.05933 7.34797 8.08609 8.31501 9.31044 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.009204 B = 0.003692 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.381327 B = 7581.297312 C = 9900.816096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.124 4.124 5 C 0.157 3.843 6 H 0.068 0.932 7 C 0.144 3.856 8 N -0.745 5.745 9 C -0.238 4.238 10 H 0.083 0.917 11 C -0.076 4.076 12 N -0.971 5.971 13 Si 0.972 3.028 14 H -0.262 1.262 15 H -0.297 1.297 16 H -0.296 1.296 17 N -0.678 5.678 18 C 0.617 3.383 19 O -0.535 6.535 20 C 0.112 3.888 21 N -0.271 5.271 22 N -0.061 5.061 23 N -0.109 5.109 24 C 0.157 3.843 25 C -0.150 4.150 26 C -0.159 4.159 27 C -0.154 4.154 28 N -0.255 5.255 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.371 0.629 41 H 0.248 0.752 42 H 0.412 0.588 43 H 0.064 0.936 44 H 0.130 0.870 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.133 0.867 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.131 0.869 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -10.886 19.613 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 C -0.195 4.195 4 C -0.181 4.181 5 C 0.053 3.947 6 H 0.086 0.914 7 C 0.018 3.982 8 N -0.387 5.387 9 C -0.370 4.370 10 H 0.100 0.900 11 C -0.268 4.268 12 N -0.622 5.622 13 Si 0.802 3.198 14 H -0.186 1.186 15 H -0.225 1.225 16 H -0.224 1.224 17 N -0.328 5.328 18 C 0.398 3.602 19 O -0.409 6.409 20 C -0.171 4.171 21 N -0.145 5.145 22 N -0.053 5.053 23 N -0.026 5.026 24 C 0.079 3.921 25 C -0.208 4.208 26 C -0.217 4.217 27 C -0.212 4.212 28 N -0.109 5.109 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.203 0.797 41 H 0.057 0.943 42 H 0.249 0.751 43 H 0.083 0.917 44 H 0.148 0.852 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.151 0.849 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.150 0.850 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.130 -11.013 19.797 23.027 hybrid contribution 0.225 0.103 -1.517 1.537 sum -3.904 -10.910 18.280 21.643 Atomic orbital electron populations 1.21902 0.93228 1.01680 1.02854 1.20882 0.96946 0.96209 0.93120 1.21875 1.01000 0.93587 1.03084 1.21812 1.00632 0.98881 0.96787 1.21374 0.98698 0.79014 0.95647 0.91393 1.21271 0.98319 0.94578 0.84070 1.42571 1.66827 1.27743 1.01604 1.19684 1.27432 1.05265 0.84576 0.89961 1.25558 1.01776 0.97855 1.01609 1.69854 1.45383 1.18165 1.28788 0.85080 0.76905 0.77728 0.80085 1.18565 1.22455 1.22388 1.45638 1.28657 1.08177 1.50334 1.16110 0.83261 0.80962 0.79910 1.90797 1.24564 1.80997 1.44567 1.25295 0.93904 0.97388 1.00557 1.76154 1.17553 1.01445 1.19377 1.78793 1.10528 1.07237 1.08786 1.51354 1.12037 1.10828 1.28423 1.22257 1.00437 0.71701 0.97719 1.22181 0.96338 0.99581 1.02663 1.22322 0.92626 1.04970 1.01788 1.22292 1.03440 1.06678 0.88814 1.74903 1.20433 0.94137 1.21445 0.91773 0.90808 0.93610 0.90405 0.92954 0.91785 0.94896 0.93430 0.91332 0.93670 0.93372 0.79706 0.94334 0.75128 0.91735 0.85156 0.90960 0.91837 0.84882 0.92621 0.91754 0.85035 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 7.97 71.98 0.57 -2.77 16 2 C -0.07 -1.89 0.62 -52.18 -0.03 -1.92 16 3 C -0.14 -3.20 8.12 71.98 0.58 -2.62 16 4 C -0.12 -3.45 7.00 71.98 0.50 -2.94 16 5 C 0.16 5.42 1.69 44.99 0.08 5.49 16 6 H 0.07 2.68 7.57 -2.39 -0.02 2.66 16 7 C 0.14 5.54 5.10 86.38 0.44 5.98 16 8 N -0.74 -37.79 5.43 -343.43 -1.87 -39.66 16 9 C -0.24 -13.19 9.99 84.03 0.84 -12.35 16 10 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 11 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 12 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 13 Si 0.97 46.75 29.55 68.60 2.03 48.77 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 16 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 17 N -0.68 -24.52 3.64 -445.25 -1.62 -26.14 16 18 C 0.62 23.66 6.19 86.83 0.54 24.20 16 19 O -0.53 -22.15 14.22 -3.86 -0.05 -22.21 16 20 C 0.11 4.14 8.14 137.15 1.12 5.26 16 21 N -0.27 -9.88 12.26 -52.37 -0.64 -10.52 16 22 N -0.06 -1.92 12.21 37.02 0.45 -1.47 16 23 N -0.11 -2.96 3.72 -152.25 -0.57 -3.53 16 24 C 0.16 2.47 1.30 3.60 0.00 2.48 16 25 C -0.15 -1.64 7.90 71.98 0.57 -1.08 16 26 C -0.16 -2.16 8.66 71.98 0.62 -1.54 16 27 C -0.15 -1.72 8.66 71.98 0.62 -1.09 16 28 N -0.25 -8.43 11.85 -52.32 -0.62 -9.05 16 29 H 0.06 1.55 6.32 -2.39 -0.02 1.53 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.17 7.60 -2.38 -0.02 1.15 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.49 6.54 -2.39 -0.02 1.47 16 35 H 0.03 1.02 5.77 -2.39 -0.01 1.00 16 36 H 0.05 1.47 7.53 -2.39 -0.02 1.45 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.65 6.17 -2.38 -0.01 1.64 16 39 H 0.05 1.80 6.71 -2.39 -0.02 1.79 16 40 H 0.37 20.80 7.33 -92.71 -0.68 20.12 16 41 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.41 15.20 8.35 -92.71 -0.77 14.42 16 43 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -75.06 405.99 3.81 -71.25 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.51 Total: 40.19 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.93 Total: 13.16 kcal Atomic # 7 Polarization: -146.58 SS G_CDS: -4.58 Total: -151.16 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -75.06 3.81 -71.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486399353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.062 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds