Wall clock time and date at job start Tue Mar 31 2020 20:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99717 * 2 1 4 4 C 1.53003 * 109.47418 * 275.60067 * 3 2 1 5 5 H 1.09003 * 112.96483 * 66.52174 * 4 3 2 6 6 C 1.53945 * 113.76684 * 294.85195 * 4 3 2 7 7 C 1.53949 * 86.29031 * 222.08886 * 6 4 3 8 8 N 1.47578 * 113.77118 * 198.20592 * 4 3 2 9 9 C 1.36929 * 134.49364 * 318.93239 * 8 4 3 10 10 H 1.08001 * 120.00010 * 5.39542 * 9 8 4 11 11 C 1.38819 * 119.99890 * 185.39403 * 9 8 4 12 12 N 1.31610 * 120.00005 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99748 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47027 * 60.00119 * 13 11 9 15 15 H 1.48498 * 109.46998 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47465 * 300.00475 * 13 11 9 17 17 C 1.34775 * 120.00005 * 179.97438 * 2 1 3 18 18 O 1.21285 * 119.99828 * 175.73514 * 17 2 1 19 19 C 1.50699 * 119.99998 * 355.74178 * 17 2 1 20 20 N 1.46500 * 109.47132 * 53.96816 * 19 17 2 21 21 C 1.34781 * 120.00104 * 54.73685 * 20 19 17 22 22 N 1.34778 * 120.00385 * 185.00994 * 21 20 19 23 23 O 1.21595 * 119.99576 * 5.00941 * 21 20 19 24 24 C 1.52999 * 109.47056 * 293.96950 * 19 17 2 25 25 C 1.52998 * 109.46902 * 180.02562 * 24 19 17 26 26 C 1.52994 * 109.47394 * 59.99817 * 25 24 19 27 27 C 1.52999 * 109.47245 * 299.99972 * 26 25 24 28 28 C 1.52994 * 109.46989 * 60.00077 * 27 26 25 29 29 H 1.08993 * 109.47171 * 274.62843 * 1 2 3 30 30 H 1.09002 * 109.46812 * 34.63083 * 1 2 3 31 31 H 1.08995 * 109.46787 * 154.62541 * 1 2 3 32 32 H 1.09002 * 109.47643 * 35.60263 * 3 2 1 33 33 H 1.09003 * 109.46985 * 155.59787 * 3 2 1 34 34 H 1.09004 * 113.74253 * 336.43368 * 6 4 3 35 35 H 1.08997 * 113.74559 * 107.63608 * 6 4 3 36 36 H 1.09004 * 113.77011 * 137.90214 * 7 6 4 37 37 H 1.08996 * 113.77218 * 269.19602 * 7 6 4 38 38 H 0.97006 * 120.00121 * 180.02562 * 12 11 9 39 39 H 0.96996 * 120.00548 * 234.73121 * 20 19 17 40 40 H 0.97007 * 119.99356 * 359.97438 * 22 21 20 41 41 H 0.96992 * 120.00207 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47111 * 60.00274 * 24 19 17 43 43 H 1.08998 * 109.47179 * 300.00110 * 24 19 17 44 44 H 1.09001 * 109.47480 * 299.99601 * 25 24 19 45 45 H 1.09000 * 109.47145 * 180.02562 * 25 24 19 46 46 H 1.09003 * 109.47400 * 60.00125 * 26 25 24 47 47 H 1.09001 * 109.47145 * 179.97438 * 26 25 24 48 48 H 1.08999 * 109.47111 * 179.97438 * 27 26 25 49 49 H 1.08998 * 109.47179 * 299.99899 * 27 26 25 50 50 H 1.09000 * 109.47476 * 180.02562 * 28 27 26 51 51 H 1.09001 * 109.47723 * 60.00197 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3306 1.7809 -1.4356 5 1 1.3744 2.0613 -1.8775 6 6 3.1906 0.8786 -2.3390 7 6 3.8026 2.1806 -2.8870 8 7 3.3869 2.7967 -1.6093 9 6 3.8107 3.8749 -0.8793 10 1 3.3833 4.0704 0.0930 11 6 4.7898 4.7167 -1.3892 12 7 5.3102 4.4787 -2.5743 13 14 5.3674 6.1880 -0.3937 14 1 5.9329 5.7208 0.8976 15 1 6.4102 6.9219 -1.1546 16 1 4.2180 7.0913 -0.1327 17 6 2.1389 -1.1672 0.0005 18 8 3.3493 -1.1686 -0.0776 19 6 1.3886 -2.4704 0.0980 20 7 0.3709 -2.5279 -0.9543 21 6 0.7237 -2.3525 -2.2432 22 7 -0.2237 -2.3045 -3.2007 23 8 1.8967 -2.2376 -2.5422 24 6 0.7126 -2.5685 1.4671 25 6 -0.0487 -3.8919 1.5662 26 6 0.9286 -5.0566 1.3954 27 6 1.6046 -4.9585 0.0263 28 6 2.3659 -3.6352 -0.0728 29 1 -0.3633 0.0829 1.0242 30 1 -0.3633 0.8456 -0.5840 31 1 -0.3633 -0.9285 -0.4404 32 1 1.6555 2.0012 0.5983 33 1 3.1896 1.1155 0.4246 34 1 3.8993 0.2571 -1.7915 35 1 2.6148 0.3183 -3.0756 36 1 4.8832 2.1350 -3.0229 37 1 3.2809 2.5791 -3.7571 38 1 5.9947 5.0667 -2.9305 39 1 -0.5567 -2.6922 -0.7235 40 1 -1.1594 -2.3966 -2.9621 41 1 0.0302 -2.1780 -4.1282 42 1 0.0166 -1.7386 1.5889 43 1 1.4697 -2.5257 2.2500 44 1 -0.8059 -3.9352 0.7833 45 1 -0.5307 -3.9617 2.5414 46 1 1.6857 -5.0135 2.1784 47 1 0.3863 -5.9994 1.4665 48 1 2.3012 -5.7880 -0.0952 49 1 0.8475 -5.0017 -0.7566 50 1 2.8472 -3.5650 -1.0483 51 1 3.1231 -3.5919 0.7101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488673729.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:08 Heat of formation + Delta-G solvation = 4.354563 kcal Electronic energy + Delta-G solvation = -32603.536475 eV Core-core repulsion = 28540.367274 eV Total energy + Delta-G solvation = -4063.169201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42205 -39.00222 -38.10012 -37.14970 -35.25929 -34.01596 -33.39227 -31.99066 -31.06164 -29.88845 -28.28605 -27.62775 -26.37442 -23.74862 -23.04315 -22.93345 -22.14291 -21.67301 -19.76649 -19.09167 -18.74059 -18.53172 -17.31251 -16.65699 -16.31398 -16.20896 -15.54874 -15.30458 -14.86375 -14.77487 -14.49394 -14.38037 -13.95335 -13.90360 -13.75440 -13.30760 -12.96245 -12.81464 -12.53816 -12.43716 -12.35696 -12.22334 -12.11828 -11.84342 -11.39326 -11.21225 -10.89054 -10.83178 -10.78425 -10.66140 -10.54349 -10.53682 -10.27321 -10.07194 -9.79026 -9.70495 -9.63108 -9.44476 -9.31345 -8.72496 -8.63391 -8.12489 -6.68429 -5.61244 -2.92258 2.46840 3.07987 3.20307 3.35727 3.47878 3.51526 3.53232 4.30101 4.37412 4.40699 4.47152 4.59601 4.83901 4.89999 5.01397 5.15332 5.19755 5.22302 5.32028 5.40430 5.46854 5.48348 5.60596 5.64293 5.70164 5.76982 5.77727 5.84067 5.87297 5.99026 6.07096 6.11077 6.16990 6.30594 6.32336 6.39625 6.55204 6.64715 6.80798 6.81698 6.94173 6.98172 7.13399 7.46055 7.69189 7.77180 7.80691 7.82146 8.14861 8.57500 8.59629 9.19612 9.86534 10.80841 11.56514 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.003349 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.222352 B = 8357.493187 C = 8834.344071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.603 5.603 3 C 0.117 3.883 4 C 0.130 3.870 5 H 0.033 0.967 6 C -0.145 4.145 7 C 0.163 3.837 8 N -0.601 5.601 9 C -0.221 4.221 10 H 0.076 0.924 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.908 3.092 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.287 1.287 17 C 0.518 3.482 18 O -0.511 6.511 19 C 0.189 3.811 20 N -0.732 5.732 21 C 0.698 3.302 22 N -0.868 5.868 23 O -0.556 6.556 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.114 4.114 28 C -0.116 4.116 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.252 0.748 39 H 0.396 0.604 40 H 0.393 0.607 41 H 0.416 0.584 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.039 -21.136 6.034 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.337 5.337 3 C -0.006 4.006 4 C 0.022 3.978 5 H 0.051 0.949 6 C -0.183 4.183 7 C 0.038 3.962 8 N -0.327 5.327 9 C -0.348 4.348 10 H 0.094 0.906 11 C -0.205 4.205 12 N -0.567 5.567 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.214 1.214 17 C 0.303 3.697 18 O -0.384 6.384 19 C 0.099 3.901 20 N -0.393 5.393 21 C 0.396 3.604 22 N -0.437 5.437 23 O -0.430 6.430 24 C -0.166 4.166 25 C -0.152 4.152 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.232 0.768 40 H 0.220 0.780 41 H 0.248 0.752 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.070 -20.720 5.953 27.498 hybrid contribution -0.835 1.132 0.208 1.422 sum -17.905 -19.588 6.160 27.244 Atomic orbital electron populations 1.22296 0.80962 1.04237 1.01090 1.47658 1.06243 1.06268 1.73495 1.21778 0.97471 0.82592 0.98755 1.22466 0.92617 0.89682 0.93053 0.94934 1.23689 0.99258 0.96820 0.98521 1.22157 0.99182 0.86830 0.88054 1.46007 1.34091 1.30527 1.22061 1.18935 1.17004 1.00914 0.97993 0.90617 1.24781 0.99941 0.98989 0.96773 1.69841 1.30392 1.39215 1.17231 0.86260 0.78075 0.82690 0.79096 1.21156 1.21652 1.21364 1.20379 0.88015 0.84688 0.76657 1.90716 1.13847 1.86455 1.47335 1.20354 0.88454 0.94083 0.87227 1.45394 1.10784 1.78220 1.04931 1.16028 0.85577 0.77955 0.80811 1.43000 1.08786 1.81652 1.10261 1.91105 1.15951 1.55199 1.80786 1.21958 1.00832 0.98942 0.94888 1.21504 0.97839 0.94013 1.01851 1.21587 0.98617 0.97788 0.97975 1.21490 0.99452 0.97390 0.96824 1.21758 0.96905 0.91518 1.05271 0.93361 0.91654 0.89694 0.91949 0.89188 0.89598 0.93776 0.91869 0.96036 0.93759 0.76765 0.78032 0.75190 0.90197 0.89599 0.92051 0.91294 0.91714 0.92037 0.91833 0.92153 0.88937 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 8.93 59.85 0.53 1.15 16 2 N -0.60 -9.34 2.79 -181.57 -0.51 -9.85 16 3 C 0.12 2.31 5.40 -4.04 -0.02 2.29 16 4 C 0.13 2.95 4.57 -66.86 -0.31 2.65 16 5 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 6 C -0.14 -3.43 7.23 -25.79 -0.19 -3.62 16 7 C 0.16 4.41 7.40 -2.84 -0.02 4.39 16 8 N -0.60 -16.71 3.58 -169.70 -0.61 -17.32 16 9 C -0.22 -6.53 10.51 -15.06 -0.16 -6.69 16 10 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.92 -29.10 11.55 55.49 0.64 -28.46 16 13 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 14 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 C 0.52 8.46 4.66 -10.99 -0.05 8.41 16 18 O -0.51 -10.86 13.69 5.55 0.08 -10.78 16 19 C 0.19 2.12 0.25 -132.97 -0.03 2.08 16 20 N -0.73 -6.36 1.75 -53.50 -0.09 -6.45 16 21 C 0.70 8.10 8.03 -86.91 -0.70 7.40 16 22 N -0.87 -6.32 8.88 27.64 0.25 -6.07 16 23 O -0.56 -9.66 14.42 5.28 0.08 -9.58 16 24 C -0.13 -1.02 4.59 -26.73 -0.12 -1.14 16 25 C -0.11 -0.63 5.75 -26.74 -0.15 -0.79 16 26 C -0.12 -0.81 5.92 -26.73 -0.16 -0.96 16 27 C -0.11 -0.99 5.77 -26.73 -0.15 -1.14 16 28 C -0.12 -1.42 3.91 -26.73 -0.10 -1.53 16 29 H 0.05 0.41 7.23 -51.93 -0.38 0.04 16 30 H 0.06 0.73 8.11 -51.93 -0.42 0.30 16 31 H 0.09 0.70 3.76 -51.93 -0.20 0.50 16 32 H 0.06 1.15 8.11 -51.93 -0.42 0.72 16 33 H 0.09 2.07 7.32 -51.93 -0.38 1.69 16 34 H 0.09 2.23 6.39 -51.93 -0.33 1.90 16 35 H 0.04 1.00 8.09 -51.93 -0.42 0.58 16 36 H 0.06 1.87 7.43 -51.93 -0.39 1.49 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.40 1.98 6.50 -40.82 -0.27 1.71 16 40 H 0.39 1.38 8.85 -40.82 -0.36 1.02 16 41 H 0.42 3.06 8.93 -40.82 -0.36 2.70 16 42 H 0.08 0.55 5.57 -51.93 -0.29 0.27 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.26 6.76 -51.93 -0.35 -0.09 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.51 7.61 -51.93 -0.39 0.11 16 50 H 0.09 1.48 6.39 -51.93 -0.33 1.15 16 51 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -39.04 384.16 -9.35 -48.39 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.21 Total: 3.98 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -1.73 Total: 12.17 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -0.32 Total: -68.15 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.15 Total: -20.36 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.04 -9.35 -48.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488673729.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.741 kcal (2) G-P(sol) polarization free energy of solvation -39.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds