Wall clock time and date at job start Tue Mar 31 2020 20:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99717 * 2 1 4 4 C 1.53003 * 109.47418 * 275.60067 * 3 2 1 5 5 H 1.09003 * 112.96483 * 66.52174 * 4 3 2 6 6 C 1.53945 * 113.76684 * 294.85195 * 4 3 2 7 7 C 1.53949 * 86.29031 * 222.08886 * 6 4 3 8 8 N 1.47578 * 113.77118 * 198.20592 * 4 3 2 9 9 C 1.36929 * 134.49364 * 318.93239 * 8 4 3 10 10 H 1.08001 * 120.00010 * 5.39542 * 9 8 4 11 11 C 1.38819 * 119.99890 * 185.39403 * 9 8 4 12 12 N 1.31610 * 120.00005 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99748 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47027 * 60.00119 * 13 11 9 15 15 H 1.48498 * 109.46998 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47465 * 300.00475 * 13 11 9 17 17 C 1.34775 * 120.00005 * 179.97438 * 2 1 3 18 18 O 1.21285 * 119.99828 * 175.73514 * 17 2 1 19 19 C 1.50699 * 119.99998 * 355.74178 * 17 2 1 20 20 N 1.46500 * 109.47132 * 53.96816 * 19 17 2 21 21 C 1.34781 * 120.00104 * 54.73685 * 20 19 17 22 22 N 1.34778 * 120.00385 * 185.00994 * 21 20 19 23 23 O 1.21595 * 119.99576 * 5.00941 * 21 20 19 24 24 C 1.52999 * 109.47056 * 293.96950 * 19 17 2 25 25 C 1.52998 * 109.46902 * 180.02562 * 24 19 17 26 26 C 1.52994 * 109.47394 * 59.99817 * 25 24 19 27 27 C 1.52999 * 109.47245 * 299.99972 * 26 25 24 28 28 C 1.52994 * 109.46989 * 60.00077 * 27 26 25 29 29 H 1.08993 * 109.47171 * 274.62843 * 1 2 3 30 30 H 1.09002 * 109.46812 * 34.63083 * 1 2 3 31 31 H 1.08995 * 109.46787 * 154.62541 * 1 2 3 32 32 H 1.09002 * 109.47643 * 35.60263 * 3 2 1 33 33 H 1.09003 * 109.46985 * 155.59787 * 3 2 1 34 34 H 1.09004 * 113.74253 * 336.43368 * 6 4 3 35 35 H 1.08997 * 113.74559 * 107.63608 * 6 4 3 36 36 H 1.09004 * 113.77011 * 137.90214 * 7 6 4 37 37 H 1.08996 * 113.77218 * 269.19602 * 7 6 4 38 38 H 0.97006 * 120.00121 * 180.02562 * 12 11 9 39 39 H 0.96996 * 120.00548 * 234.73121 * 20 19 17 40 40 H 0.97007 * 119.99356 * 359.97438 * 22 21 20 41 41 H 0.96992 * 120.00207 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47111 * 60.00274 * 24 19 17 43 43 H 1.08998 * 109.47179 * 300.00110 * 24 19 17 44 44 H 1.09001 * 109.47480 * 299.99601 * 25 24 19 45 45 H 1.09000 * 109.47145 * 180.02562 * 25 24 19 46 46 H 1.09003 * 109.47400 * 60.00125 * 26 25 24 47 47 H 1.09001 * 109.47145 * 179.97438 * 26 25 24 48 48 H 1.08999 * 109.47111 * 179.97438 * 27 26 25 49 49 H 1.08998 * 109.47179 * 299.99899 * 27 26 25 50 50 H 1.09000 * 109.47476 * 180.02562 * 28 27 26 51 51 H 1.09001 * 109.47723 * 60.00197 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3306 1.7809 -1.4356 5 1 1.3744 2.0613 -1.8775 6 6 3.1906 0.8786 -2.3390 7 6 3.8026 2.1806 -2.8870 8 7 3.3869 2.7967 -1.6093 9 6 3.8107 3.8749 -0.8793 10 1 3.3833 4.0704 0.0930 11 6 4.7898 4.7167 -1.3892 12 7 5.3102 4.4787 -2.5743 13 14 5.3674 6.1880 -0.3937 14 1 5.9329 5.7208 0.8976 15 1 6.4102 6.9219 -1.1546 16 1 4.2180 7.0913 -0.1327 17 6 2.1389 -1.1672 0.0005 18 8 3.3493 -1.1686 -0.0776 19 6 1.3886 -2.4704 0.0980 20 7 0.3709 -2.5279 -0.9543 21 6 0.7237 -2.3525 -2.2432 22 7 -0.2237 -2.3045 -3.2007 23 8 1.8967 -2.2376 -2.5422 24 6 0.7126 -2.5685 1.4671 25 6 -0.0487 -3.8919 1.5662 26 6 0.9286 -5.0566 1.3954 27 6 1.6046 -4.9585 0.0263 28 6 2.3659 -3.6352 -0.0728 29 1 -0.3633 0.0829 1.0242 30 1 -0.3633 0.8456 -0.5840 31 1 -0.3633 -0.9285 -0.4404 32 1 1.6555 2.0012 0.5983 33 1 3.1896 1.1155 0.4246 34 1 3.8993 0.2571 -1.7915 35 1 2.6148 0.3183 -3.0756 36 1 4.8832 2.1350 -3.0229 37 1 3.2809 2.5791 -3.7571 38 1 5.9947 5.0667 -2.9305 39 1 -0.5567 -2.6922 -0.7235 40 1 -1.1594 -2.3966 -2.9621 41 1 0.0302 -2.1780 -4.1282 42 1 0.0166 -1.7386 1.5889 43 1 1.4697 -2.5257 2.2500 44 1 -0.8059 -3.9352 0.7833 45 1 -0.5307 -3.9617 2.5414 46 1 1.6857 -5.0135 2.1784 47 1 0.3863 -5.9994 1.4665 48 1 2.3012 -5.7880 -0.0952 49 1 0.8475 -5.0017 -0.7566 50 1 2.8472 -3.5650 -1.0483 51 1 3.1231 -3.5919 0.7101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488673729.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:07 Heat of formation + Delta-G solvation = -25.808257 kcal Electronic energy + Delta-G solvation = -32604.844433 eV Core-core repulsion = 28540.367274 eV Total energy + Delta-G solvation = -4064.477159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.41526 -40.32312 -39.48323 -38.48590 -36.57971 -35.01571 -34.31087 -34.05029 -31.79875 -30.78689 -29.87154 -29.69928 -27.47414 -25.35710 -24.92260 -23.64930 -23.48235 -22.60260 -20.96812 -20.54930 -20.10735 -19.35443 -18.69605 -18.18102 -17.45999 -17.39518 -17.07227 -16.42812 -16.21124 -16.09175 -15.77919 -15.51257 -15.31315 -15.01421 -14.83898 -14.61370 -14.32331 -13.99356 -13.81180 -13.65851 -13.38241 -13.24975 -13.21431 -13.13042 -12.95177 -12.91482 -12.58091 -12.48879 -12.32360 -12.05517 -11.83821 -11.66024 -11.56526 -11.44450 -11.30469 -11.21972 -11.11224 -10.86307 -10.73480 -10.52678 -9.76240 -9.53124 -8.90290 -7.90097 -5.24179 1.41793 1.47243 1.48208 1.53338 1.94827 2.17358 2.30124 2.49095 3.27586 3.36511 3.50847 3.64891 3.70726 3.79799 3.92259 4.12496 4.20878 4.26005 4.26390 4.31350 4.38195 4.45090 4.52692 4.54121 4.64267 4.69622 4.79112 4.81060 4.83225 4.94159 5.03740 5.06525 5.07570 5.18861 5.20527 5.22332 5.26129 5.33375 5.43368 5.46599 5.47301 5.56553 5.58553 5.72787 5.90677 5.95173 6.09028 6.54474 6.88713 7.15949 7.33708 7.60064 7.76994 8.58312 9.28349 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.003349 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.222352 B = 8357.493187 C = 8834.344071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.601 5.601 3 C 0.131 3.869 4 C 0.141 3.859 5 H 0.052 0.948 6 C -0.115 4.115 7 C 0.161 3.839 8 N -0.626 5.626 9 C -0.232 4.232 10 H 0.089 0.911 11 C -0.074 4.074 12 N -0.959 5.959 13 Si 0.983 3.017 14 H -0.277 1.277 15 H -0.296 1.296 16 H -0.270 1.270 17 C 0.508 3.492 18 O -0.573 6.573 19 C 0.201 3.799 20 N -0.711 5.711 21 C 0.692 3.308 22 N -0.846 5.846 23 O -0.619 6.619 24 C -0.124 4.124 25 C -0.108 4.108 26 C -0.121 4.121 27 C -0.106 4.106 28 C -0.114 4.114 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.019 0.981 38 H 0.247 0.753 39 H 0.420 0.580 40 H 0.415 0.585 41 H 0.418 0.582 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.083 0.917 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.047 0.953 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.727 -21.992 8.073 33.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.334 5.334 3 C 0.006 3.994 4 C 0.034 3.966 5 H 0.069 0.931 6 C -0.154 4.154 7 C 0.035 3.965 8 N -0.353 5.353 9 C -0.360 4.360 10 H 0.107 0.893 11 C -0.266 4.266 12 N -0.608 5.608 13 Si 0.811 3.189 14 H -0.203 1.203 15 H -0.222 1.222 16 H -0.196 1.196 17 C 0.295 3.705 18 O -0.450 6.450 19 C 0.110 3.890 20 N -0.375 5.375 21 C 0.390 3.610 22 N -0.416 5.416 23 O -0.498 6.498 24 C -0.162 4.162 25 C -0.145 4.145 26 C -0.158 4.158 27 C -0.143 4.143 28 C -0.153 4.153 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.262 0.738 40 H 0.246 0.754 41 H 0.250 0.750 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.075 0.925 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.928 -21.616 8.021 31.818 hybrid contribution 0.623 1.322 -0.490 1.541 sum -21.305 -20.294 7.531 30.372 Atomic orbital electron populations 1.22681 0.77340 1.05686 1.03583 1.47726 1.08288 1.04425 1.72911 1.21312 0.96665 0.85080 0.96354 1.22565 0.91859 0.87231 0.94898 0.93059 1.23295 0.98644 0.95079 0.98345 1.22047 0.97059 0.88937 0.88431 1.46294 1.35861 1.31033 1.22070 1.19418 1.16916 1.00986 0.98675 0.89338 1.25756 1.00414 1.02327 0.98124 1.70064 1.31121 1.40380 1.19256 0.85084 0.77645 0.78794 0.77399 1.20320 1.22186 1.19577 1.21412 0.87705 0.86364 0.74986 1.90690 1.16914 1.87447 1.49925 1.20136 0.88693 0.90292 0.89863 1.45069 1.11470 1.77418 1.03499 1.16329 0.85199 0.77597 0.81901 1.42779 1.09328 1.79971 1.09520 1.91098 1.18953 1.57859 1.81841 1.22013 1.00878 1.01609 0.91672 1.21533 0.97481 0.91350 1.04126 1.21595 0.98816 0.99583 0.95802 1.21441 0.99256 0.94713 0.98913 1.21666 0.97287 0.94435 1.01903 0.90081 0.91489 0.87272 0.89893 0.93281 0.92352 0.92619 0.95626 0.96352 0.94401 0.73837 0.75372 0.74991 0.88132 0.90829 0.89616 0.88939 0.92497 0.89884 0.92305 0.91247 0.93438 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 8.93 127.77 1.14 1.99 16 2 N -0.60 -17.97 2.79 -846.75 -2.36 -20.33 16 3 C 0.13 5.15 5.40 86.38 0.47 5.62 16 4 C 0.14 6.47 4.57 45.09 0.21 6.67 16 5 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 6 C -0.12 -5.72 7.23 31.25 0.23 -5.49 16 7 C 0.16 9.18 7.40 86.44 0.64 9.82 16 8 N -0.63 -35.82 3.58 -690.81 -2.47 -38.29 16 9 C -0.23 -13.93 10.51 84.04 0.88 -13.05 16 10 H 0.09 4.95 7.83 -2.91 -0.02 4.93 16 11 C -0.07 -4.52 5.50 84.87 0.47 -4.06 16 12 N -0.96 -63.00 11.55 21.65 0.25 -62.75 16 13 Si 0.98 48.49 29.55 68.60 2.03 50.52 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 15 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 C 0.51 16.88 4.66 87.66 0.41 17.29 16 18 O -0.57 -26.19 13.69 -3.05 -0.04 -26.24 16 19 C 0.20 4.29 0.25 2.86 0.00 4.29 16 20 N -0.71 -10.44 1.75 -441.43 -0.77 -11.21 16 21 C 0.69 15.08 8.03 179.05 1.44 16.52 16 22 N -0.85 -10.10 8.88 -184.74 -1.64 -11.74 16 23 O -0.62 -22.15 14.42 -4.01 -0.06 -22.21 16 24 C -0.12 -1.57 4.59 30.59 0.14 -1.43 16 25 C -0.11 -0.67 5.75 30.59 0.18 -0.49 16 26 C -0.12 -1.21 5.92 30.59 0.18 -1.02 16 27 C -0.11 -1.70 5.77 30.59 0.18 -1.52 16 28 C -0.11 -2.91 3.91 30.59 0.12 -2.79 16 29 H 0.08 0.95 7.23 -2.39 -0.02 0.93 16 30 H 0.07 1.20 8.11 -2.39 -0.02 1.18 16 31 H 0.11 1.28 3.76 -2.39 -0.01 1.27 16 32 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 33 H 0.05 2.35 7.32 -2.39 -0.02 2.33 16 34 H 0.06 3.25 6.39 -2.39 -0.02 3.24 16 35 H 0.06 2.61 8.09 -2.39 -0.02 2.59 16 36 H 0.03 1.62 7.43 -2.39 -0.02 1.60 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.25 15.72 8.31 -92.70 -0.77 14.95 16 39 H 0.42 2.05 6.50 -92.71 -0.60 1.44 16 40 H 0.42 1.19 8.85 -92.70 -0.82 0.37 16 41 H 0.42 5.36 8.93 -92.71 -0.83 4.53 16 42 H 0.10 0.88 5.57 -2.39 -0.01 0.87 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 0.16 6.76 -2.39 -0.02 0.14 16 45 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 0.99 7.61 -2.39 -0.02 0.97 16 50 H 0.05 1.65 6.39 -2.39 -0.02 1.64 16 51 H 0.05 1.59 8.03 -2.39 -0.02 1.57 16 Total: -1.00 -94.22 384.16 0.32 -93.90 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -1.28 Total: 16.01 kcal Atomic # 6 Polarization: 25.66 SS G_CDS: 6.67 Total: 32.34 kcal Atomic # 7 Polarization: -137.33 SS G_CDS: -7.00 Total: -144.33 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -0.10 Total: -48.44 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -94.22 0.32 -93.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488673729.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.093 kcal (2) G-P(sol) polarization free energy of solvation -94.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds