Wall clock time and date at job start Tue Mar 31 2020 21:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00281 * 2 1 4 4 H 1.48492 * 109.47249 * 266.09277 * 3 2 1 5 5 H 1.48504 * 109.46904 * 26.09233 * 3 2 1 6 6 H 1.48497 * 109.47193 * 146.09189 * 3 2 1 7 7 C 1.38814 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99539 * 339.48657 * 7 2 1 9 9 N 1.36937 * 120.00201 * 159.48021 * 7 2 1 10 10 C 1.47417 * 125.64956 * 147.45084 * 9 7 2 11 11 C 1.54905 * 104.83421 * 204.16414 * 10 9 7 12 12 C 1.55403 * 101.66618 * 323.07406 * 11 10 9 13 13 C 1.47026 * 125.64672 * 327.48911 * 9 7 2 14 14 H 1.09002 * 109.88135 * 59.33193 * 13 9 7 15 15 C 1.53000 * 109.88095 * 298.32122 * 13 9 7 16 16 H 1.08998 * 109.59012 * 53.21340 * 15 13 9 17 17 C 1.53189 * 109.58719 * 292.92039 * 15 13 9 18 18 C 1.53044 * 109.31048 * 185.43780 * 17 15 13 19 19 C 1.53037 * 109.54110 * 61.36783 * 18 17 15 20 20 C 1.53192 * 109.31195 * 298.63850 * 19 18 17 21 21 N 1.46923 * 108.77818 * 54.63102 * 20 19 18 22 22 C 1.34773 * 120.62810 * 126.41797 * 21 20 19 23 23 O 1.21287 * 119.99554 * 183.27549 * 22 21 20 24 24 C 1.50696 * 120.00411 * 3.27444 * 22 21 20 25 25 C 1.52998 * 115.54891 * 279.71511 * 24 22 21 26 26 C 1.53005 * 109.46974 * 293.86393 * 25 24 22 27 27 F 1.39901 * 109.47209 * 184.77117 * 26 25 24 28 28 C 1.52998 * 117.50126 * 134.00213 * 24 22 21 29 29 C 1.53003 * 117.49976 * 65.37730 * 24 22 21 30 30 H 0.97003 * 119.99486 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.36792 * 323.00164 * 10 9 7 32 32 H 1.08994 * 110.37098 * 85.21182 * 10 9 7 33 33 H 1.09001 * 111.00663 * 81.05999 * 11 10 9 34 34 H 1.08995 * 111.00977 * 204.87388 * 11 10 9 35 35 H 1.09007 * 110.69252 * 277.04631 * 12 11 10 36 36 H 1.09000 * 110.85499 * 153.69740 * 12 11 10 37 37 H 1.08999 * 109.49803 * 65.49136 * 17 15 13 38 38 H 1.09001 * 109.50026 * 305.39021 * 17 15 13 39 39 H 1.08999 * 109.45961 * 301.34686 * 18 17 15 40 40 H 1.09003 * 109.44845 * 181.38266 * 18 17 15 41 41 H 1.09002 * 109.49315 * 58.58321 * 19 18 17 42 42 H 1.09001 * 109.49944 * 178.67911 * 19 18 17 43 43 H 1.08996 * 109.58336 * 174.42284 * 20 19 18 44 44 H 1.09011 * 109.58340 * 294.84392 * 20 19 18 45 45 H 1.08992 * 109.47569 * 53.86516 * 25 24 22 46 46 H 1.09006 * 109.47166 * 173.87205 * 25 24 22 47 47 H 1.08995 * 109.47464 * 304.77521 * 26 25 24 48 48 H 1.09002 * 109.46795 * 64.77373 * 26 25 24 49 49 H 1.08999 * 117.49916 * 0.02562 * 28 24 22 50 50 H 1.09000 * 117.49948 * 145.01846 * 28 24 22 51 51 H 1.08997 * 117.50319 * 214.97826 * 29 24 22 52 52 H 1.09002 * 117.49504 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5804 1.9987 -1.3967 5 1 1.4088 2.6751 0.6158 6 1 3.5040 1.4654 0.7810 7 6 2.0103 -1.2021 0.0005 8 1 1.5216 -2.1076 0.3287 9 7 3.3145 -1.2400 -0.4151 10 6 4.3562 -2.1441 0.1050 11 6 5.6930 -1.4175 -0.1852 12 6 5.4009 -0.7603 -1.5628 13 6 3.9079 -0.3850 -1.4536 14 1 3.8088 0.6634 -1.1720 15 6 3.2100 -0.6321 -2.7925 16 1 2.1331 -0.5166 -2.6701 17 6 3.5224 -2.0502 -3.2805 18 6 2.9353 -2.2445 -4.6804 19 6 3.5783 -1.2483 -5.6480 20 6 3.2667 0.1790 -5.1868 21 7 3.6981 0.3296 -3.7904 22 6 4.5255 1.3312 -3.4317 23 8 4.9218 1.4101 -2.2881 24 6 4.9582 2.3530 -4.4513 25 6 6.0947 1.9191 -5.3791 26 6 7.3769 1.7370 -4.5643 27 9 8.4399 1.4466 -5.4262 28 6 4.9028 3.8263 -4.0425 29 6 3.8804 3.2688 -5.0350 30 1 -0.4849 0.8401 -0.0004 31 1 4.2296 -2.2914 1.1777 32 1 4.3220 -3.1013 -0.4151 33 1 5.8982 -0.6598 0.5711 34 1 6.5165 -2.1280 -0.2568 35 1 5.5612 -1.4734 -2.3715 36 1 6.0129 0.1303 -1.7055 37 1 3.0810 -2.7756 -2.5970 38 1 4.6024 -2.1932 -3.3158 39 1 1.8587 -2.0771 -4.6491 40 1 3.1350 -3.2609 -5.0199 41 1 4.6578 -1.3989 -5.6609 42 1 3.1768 -1.4029 -6.6495 43 1 3.8033 0.8909 -5.8139 44 1 2.1943 0.3605 -5.2595 45 1 5.8323 0.9763 -5.8589 46 1 6.2536 2.6826 -6.1407 47 1 7.5931 2.6545 -4.0171 48 1 7.2459 0.9159 -3.8594 49 1 4.5537 4.0565 -3.0359 50 1 5.6763 4.4868 -4.4344 51 1 3.9814 3.5626 -6.0798 52 1 2.8584 3.1319 -4.6818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491280982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:25 Heat of formation + Delta-G solvation = -23.671072 kcal Electronic energy + Delta-G solvation = -33589.676046 eV Core-core repulsion = 29505.371600 eV Total energy + Delta-G solvation = -4084.304445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.58219 -42.20176 -39.72460 -38.16462 -37.76517 -34.63744 -33.72298 -32.67047 -32.14391 -31.77517 -28.96971 -26.66458 -26.07375 -25.25750 -24.29092 -23.60033 -23.10717 -22.30669 -21.60260 -20.89722 -19.43579 -18.89274 -17.59383 -17.45539 -17.23281 -16.99441 -16.75797 -16.56242 -16.29599 -15.79823 -15.61594 -15.38274 -15.20749 -15.01984 -14.84884 -14.66847 -14.60540 -14.07204 -13.76684 -13.63334 -13.42226 -13.15524 -13.11892 -12.96231 -12.87322 -12.61514 -12.52959 -12.41958 -12.19887 -12.02004 -11.97047 -11.80432 -11.69469 -11.64499 -11.54783 -11.31528 -11.25403 -11.03441 -11.01181 -10.70009 -10.03164 -9.41665 -8.67934 -8.26132 -5.55670 1.24076 1.27578 1.43259 1.61921 1.96677 2.34821 2.58008 3.02431 3.35639 3.42904 3.54981 3.72423 3.75836 3.86735 3.91332 3.93493 4.02190 4.07454 4.09402 4.14952 4.19800 4.21643 4.31771 4.43644 4.45537 4.47941 4.65329 4.67103 4.72228 4.74061 4.84065 4.88269 4.88922 4.93532 4.97065 5.02646 5.05116 5.08250 5.11903 5.15087 5.17002 5.21633 5.23740 5.31358 5.40447 5.51117 5.59236 5.76628 5.85375 6.10273 6.55052 6.84323 7.29136 7.56795 8.22232 8.94330 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.005586 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.240315 B = 5010.928860 C = 5244.566157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.009 4.009 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.319 1.319 6 H -0.292 1.292 7 C -0.224 4.224 8 H 0.053 0.947 9 N -0.624 5.624 10 C 0.123 3.877 11 C -0.129 4.129 12 C -0.116 4.116 13 C 0.138 3.862 14 H 0.063 0.937 15 C 0.145 3.855 16 H 0.030 0.970 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.122 4.122 20 C 0.099 3.901 21 N -0.598 5.598 22 C 0.524 3.476 23 O -0.551 6.551 24 C -0.160 4.160 25 C -0.093 4.093 26 C 0.061 3.939 27 F -0.227 7.227 28 C -0.150 4.150 29 C -0.143 4.143 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.135 0.865 51 H 0.145 0.855 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.674 3.125 -18.721 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.206 4.206 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.248 1.248 6 H -0.219 1.219 7 C -0.353 4.353 8 H 0.070 0.930 9 N -0.351 5.351 10 C -0.001 4.001 11 C -0.167 4.167 12 C -0.153 4.153 13 C 0.034 3.966 14 H 0.080 0.920 15 C 0.040 3.960 16 H 0.049 0.951 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.023 4.023 21 N -0.330 5.330 22 C 0.313 3.687 23 O -0.431 6.431 24 C -0.163 4.163 25 C -0.131 4.131 26 C 0.006 3.994 27 F -0.209 7.209 28 C -0.187 4.187 29 C -0.180 4.180 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.133 0.867 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.132 0.868 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.153 0.847 51 H 0.163 0.837 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.675 3.219 -18.104 22.916 hybrid contribution -0.616 0.699 1.093 1.436 sum 13.059 3.918 -17.011 21.801 Atomic orbital electron populations 1.69927 1.06790 1.26841 1.55560 1.25652 0.95416 0.99570 0.99913 0.85896 0.76750 0.81455 0.77865 1.20241 1.24811 1.21873 1.18432 0.85728 0.92932 1.38254 0.92970 1.45102 1.06425 1.43451 1.40141 1.21857 0.88137 0.93293 0.96822 1.22788 0.97153 0.99479 0.97281 1.23057 0.94763 1.00399 0.97071 1.22058 0.92588 0.95186 0.86786 0.91990 1.21459 0.96687 0.89233 0.88614 0.95145 1.21839 1.01283 0.94775 0.97266 1.21537 0.99506 1.00533 0.94049 1.21885 1.01736 0.92777 0.99631 1.22079 1.00432 0.99374 0.80437 1.48228 1.46705 1.28019 1.10082 1.20175 0.78299 0.81775 0.88450 1.90661 1.56279 1.74824 1.21302 1.21252 1.02439 0.91680 1.00923 1.21613 0.90196 1.04722 0.96563 1.21973 0.83584 1.02740 0.91058 1.92739 1.59471 1.95455 1.73191 1.23092 1.03021 0.92789 0.99839 1.23255 0.93870 0.99661 1.01208 0.93036 0.94573 0.94403 0.93346 0.88484 0.90413 0.89417 0.93010 0.90553 0.93398 0.90103 0.90703 0.87849 0.86694 0.92200 0.89082 0.86846 0.89828 0.92068 0.91201 0.84705 0.83725 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.94 13.97 21.65 0.30 -60.63 16 2 C -0.01 -0.57 5.20 84.86 0.44 -0.13 16 3 Si 0.95 53.13 24.84 68.60 1.70 54.83 16 4 H -0.28 -15.05 6.31 99.48 0.63 -14.42 16 5 H -0.32 -17.93 7.11 99.48 0.71 -17.22 16 6 H -0.29 -16.92 7.11 99.48 0.71 -16.21 16 7 C -0.22 -13.35 9.96 84.03 0.84 -12.51 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 9 N -0.62 -31.56 2.41 -668.28 -1.61 -33.16 16 10 C 0.12 5.18 7.24 86.86 0.63 5.81 16 11 C -0.13 -4.61 7.09 32.07 0.23 -4.38 16 12 C -0.12 -4.30 5.16 31.87 0.16 -4.13 16 13 C 0.14 6.24 1.10 45.34 0.05 6.29 16 14 H 0.06 3.19 1.12 -16.27 -0.02 3.17 16 15 C 0.15 5.85 2.70 44.97 0.12 5.98 16 16 H 0.03 1.54 7.58 -2.39 -0.02 1.52 16 17 C -0.11 -3.78 4.96 30.67 0.15 -3.63 16 18 C -0.12 -2.99 5.88 30.62 0.18 -2.81 16 19 C -0.12 -2.26 6.08 30.67 0.19 -2.08 16 20 C 0.10 2.17 5.85 86.36 0.51 2.68 16 21 N -0.60 -19.07 2.95 -795.02 -2.35 -21.42 16 22 C 0.52 16.82 5.92 87.66 0.52 17.34 16 23 O -0.55 -22.18 9.52 -3.05 -0.03 -22.21 16 24 C -0.16 -3.41 0.71 -52.93 -0.04 -3.45 16 25 C -0.09 -1.43 5.22 30.60 0.16 -1.27 16 26 C 0.06 1.17 7.37 71.98 0.53 1.70 16 27 F -0.23 -4.87 17.36 44.97 0.78 -4.09 16 28 C -0.15 -3.05 9.88 30.59 0.30 -2.75 16 29 C -0.14 -2.51 8.68 30.60 0.27 -2.24 16 30 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 31 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.08 2.56 5.15 -2.38 -0.01 2.54 16 36 H 0.09 3.34 5.64 -5.34 -0.03 3.31 16 37 H 0.05 2.01 7.99 -2.39 -0.02 1.99 16 38 H 0.08 2.32 5.50 -2.39 -0.01 2.31 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.12 1.81 4.58 -2.39 -0.01 1.80 16 44 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.09 1.27 7.09 -2.39 -0.02 1.25 16 46 H 0.11 1.14 8.09 -2.38 -0.02 1.12 16 47 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.06 1.38 7.88 -2.39 -0.02 1.36 16 49 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -77.11 381.55 4.84 -72.27 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.80 Total: 13.98 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.23 Total: 0.42 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -3.65 Total: -115.21 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.03 Total: -22.21 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 53.13 SS G_CDS: 1.70 Total: 54.83 kcal Total: -77.11 4.84 -72.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491280982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.604 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds