Wall clock time and date at job start Tue Mar 31 2020 21:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99610 * 2 1 4 4 H 1.48497 * 109.46937 * 355.00041 * 3 2 1 5 5 H 1.48503 * 109.46954 * 234.99862 * 3 2 1 6 6 H 1.48496 * 109.47097 * 115.00235 * 3 2 1 7 7 C 1.38806 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99913 * 203.95581 * 7 2 1 9 9 N 1.36931 * 120.00111 * 23.95748 * 7 2 1 10 10 C 1.47433 * 125.64626 * 31.00982 * 9 7 2 11 11 C 1.55126 * 104.72147 * 155.81759 * 10 9 7 12 12 C 1.55149 * 101.49090 * 37.29270 * 11 10 9 13 13 C 1.47019 * 125.65275 * 211.30943 * 9 7 2 14 14 H 1.08996 * 109.88710 * 300.44250 * 13 9 7 15 15 C 1.53001 * 109.87866 * 61.45608 * 13 9 7 16 16 H 1.09002 * 109.58487 * 303.78319 * 15 13 9 17 17 C 1.53190 * 109.59094 * 64.07240 * 15 13 9 18 18 C 1.53066 * 109.29835 * 174.28173 * 17 15 13 19 19 C 1.53037 * 109.65986 * 298.84664 * 18 17 15 20 20 C 1.53200 * 109.31396 * 61.29771 * 19 18 17 21 21 N 1.46925 * 108.77153 * 305.36903 * 20 19 18 22 22 C 1.34777 * 120.62843 * 233.62550 * 21 20 19 23 23 O 1.21279 * 120.00407 * 184.41712 * 22 21 20 24 24 C 1.50699 * 119.99847 * 4.41829 * 22 21 20 25 25 C 1.53002 * 115.55039 * 267.58310 * 24 22 21 26 26 C 1.52999 * 109.47638 * 296.92886 * 25 24 22 27 27 F 1.39895 * 109.47386 * 185.11828 * 26 25 24 28 28 C 1.53006 * 117.49931 * 121.91788 * 24 22 21 29 29 C 1.53004 * 117.50098 * 53.25523 * 24 22 21 30 30 H 0.97000 * 119.99615 * 187.55334 * 1 2 3 31 31 H 1.09000 * 110.36157 * 274.74609 * 10 9 7 32 32 H 1.08995 * 110.36401 * 37.06331 * 10 9 7 33 33 H 1.09012 * 111.18961 * 279.18554 * 11 10 9 34 34 H 1.09002 * 110.94087 * 155.28933 * 11 10 9 35 35 H 1.09002 * 110.72434 * 205.97114 * 12 11 10 36 36 H 1.08998 * 110.87292 * 82.76888 * 12 11 10 37 37 H 1.09000 * 109.49069 * 294.37497 * 17 15 13 38 38 H 1.08999 * 109.49973 * 54.46753 * 17 15 13 39 39 H 1.09000 * 109.45624 * 178.75182 * 18 17 15 40 40 H 1.08998 * 109.33809 * 58.86180 * 18 17 15 41 41 H 1.09002 * 109.49948 * 301.34822 * 19 18 17 42 42 H 1.08996 * 109.52797 * 181.26948 * 19 18 17 43 43 H 1.09001 * 109.58301 * 185.58255 * 20 19 18 44 44 H 1.08998 * 109.69881 * 65.22496 * 20 19 18 45 45 H 1.09011 * 109.46937 * 56.92986 * 25 24 22 46 46 H 1.09001 * 109.47106 * 176.92341 * 25 24 22 47 47 H 1.08995 * 109.46833 * 305.12076 * 26 25 24 48 48 H 1.08996 * 109.46972 * 65.11497 * 26 25 24 49 49 H 1.08993 * 117.49703 * 359.97438 * 28 24 22 50 50 H 1.09004 * 117.49690 * 145.01920 * 28 24 22 51 51 H 1.08994 * 117.49921 * 214.97381 * 29 24 22 52 52 H 1.08993 * 117.49389 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2897 2.7438 -0.1220 5 1 3.1931 1.6450 -1.1469 6 1 3.0101 1.7507 1.2688 7 6 2.0103 -1.2021 0.0005 8 1 3.0206 -1.2421 0.3803 9 7 1.4142 -2.3371 -0.4805 10 6 0.4062 -2.3888 -1.5551 11 6 0.5222 -3.8227 -2.1357 12 6 0.7949 -4.6538 -0.8544 13 6 1.6687 -3.7054 -0.0067 14 1 2.7217 -3.9538 -0.1393 15 6 1.2884 -3.8236 1.4706 16 1 1.8342 -3.0782 2.0492 17 6 -0.2180 -3.5976 1.6329 18 6 -0.6146 -3.8574 3.0882 19 6 -0.2983 -5.3086 3.4570 20 6 1.2079 -5.5504 3.3159 21 7 1.6231 -5.1681 1.9593 22 6 2.2979 -6.0345 1.1780 23 8 2.7050 -5.6811 0.0916 24 6 2.5466 -7.4424 1.6543 25 6 3.8697 -7.6664 2.3893 26 6 5.0352 -7.3869 1.4383 27 9 6.2411 -7.7034 2.0729 28 6 2.0190 -8.5858 0.7852 29 6 1.3359 -8.2566 2.1150 30 1 -0.4849 -0.8328 0.1104 31 1 -0.5910 -2.2213 -1.1482 32 1 0.6324 -1.6494 -2.3233 33 1 1.3549 -3.8984 -2.8352 34 1 -0.4113 -4.1283 -2.6084 35 1 1.3390 -5.5670 -1.0955 36 1 -0.1358 -4.8864 -0.3369 37 1 -0.4626 -2.5698 1.3646 38 1 -0.7609 -4.2830 0.9820 39 1 -1.6823 -3.6758 3.2115 40 1 -0.0547 -3.1868 3.7401 41 1 -0.8386 -5.9797 2.7893 42 1 -0.6022 -5.4975 4.4865 43 1 1.4256 -6.6056 3.4809 44 1 1.7469 -4.9474 4.0466 45 1 3.9289 -6.9929 3.2444 46 1 3.9228 -8.6986 2.7356 47 1 4.9260 -7.9961 0.5411 48 1 5.0350 -6.3322 1.1636 49 1 1.4916 -8.3196 -0.1308 50 1 2.6142 -9.4977 0.7374 51 1 1.4821 -8.9521 2.9414 52 1 0.3596 -7.7737 2.0740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491280983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:28 Heat of formation + Delta-G solvation = -34.094995 kcal Electronic energy + Delta-G solvation = -32892.169309 eV Core-core repulsion = 28807.412849 eV Total energy + Delta-G solvation = -4084.756461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.63497 -42.17638 -39.66032 -38.17176 -37.78303 -34.69428 -33.73702 -32.60239 -32.17525 -31.01193 -28.87454 -26.66756 -26.02549 -25.19480 -24.32543 -23.46403 -23.19112 -22.30033 -21.51907 -20.77222 -19.57845 -19.07682 -17.67417 -17.27281 -17.19231 -16.89847 -16.68476 -16.23796 -15.94832 -15.86623 -15.72731 -15.46023 -15.16685 -15.11494 -14.83751 -14.75982 -14.48416 -14.21112 -13.70501 -13.46104 -13.31315 -13.11173 -12.98023 -12.74046 -12.63212 -12.56577 -12.47473 -12.32794 -12.09315 -11.93832 -11.84982 -11.77615 -11.73507 -11.55305 -11.49521 -11.46399 -11.29522 -11.09347 -10.96176 -10.56860 -9.93696 -9.43174 -8.83345 -8.15003 -5.42807 1.52767 1.60461 1.64050 1.79767 1.96683 2.61780 2.65940 3.21524 3.38172 3.48797 3.66297 3.74777 3.77945 3.83729 3.89330 3.90940 4.01047 4.06968 4.08229 4.16123 4.17615 4.21772 4.28788 4.37774 4.43666 4.50770 4.61198 4.67557 4.70541 4.78016 4.83324 4.86428 4.92415 4.93393 4.97119 4.99166 5.04249 5.05596 5.08521 5.12673 5.17741 5.21258 5.24095 5.28715 5.37861 5.44211 5.55960 5.74333 5.87060 6.39971 6.58510 7.00821 7.32484 7.74144 8.41910 9.02338 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.004217 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.318965 B = 6637.783792 C = 7138.940907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.065 4.065 3 Si 1.109 2.891 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.336 4.336 8 H 0.034 0.966 9 N -0.609 5.609 10 C 0.147 3.853 11 C -0.127 4.127 12 C -0.107 4.107 13 C 0.158 3.842 14 H 0.051 0.949 15 C 0.153 3.847 16 H 0.028 0.972 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.121 4.121 20 C 0.096 3.904 21 N -0.596 5.596 22 C 0.530 3.470 23 O -0.550 6.550 24 C -0.167 4.167 25 C -0.093 4.093 26 C 0.061 3.939 27 F -0.231 7.231 28 C -0.142 4.142 29 C -0.141 4.141 30 H 0.258 0.742 31 H 0.006 0.994 32 H 0.010 0.990 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.088 0.912 48 H 0.050 0.950 49 H 0.085 0.915 50 H 0.126 0.874 51 H 0.138 0.862 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -22.055 8.761 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.263 4.263 3 Si 0.934 3.066 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.465 4.465 8 H 0.052 0.948 9 N -0.335 5.335 10 C 0.021 3.979 11 C -0.165 4.165 12 C -0.144 4.144 13 C 0.053 3.947 14 H 0.068 0.932 15 C 0.048 3.952 16 H 0.046 0.954 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.026 4.026 21 N -0.329 5.329 22 C 0.319 3.681 23 O -0.428 6.428 24 C -0.170 4.170 25 C -0.131 4.131 26 C 0.006 3.994 27 F -0.212 7.212 28 C -0.180 4.180 29 C -0.177 4.177 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.141 0.859 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.133 0.867 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.104 0.896 50 H 0.144 0.856 51 H 0.156 0.844 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.077 -20.146 8.154 21.734 hybrid contribution 0.282 -0.439 -0.137 0.539 sum 0.359 -20.585 8.017 22.094 Atomic orbital electron populations 1.70865 1.07321 1.29792 1.49700 1.27091 0.96698 1.04240 0.98288 0.82943 0.73953 0.72616 0.77071 1.21241 1.21166 1.20327 1.19679 0.95632 0.88850 1.42370 0.94822 1.44893 1.48449 1.02429 1.37715 1.21464 0.91767 0.95025 0.89638 1.22766 1.01249 0.94923 0.97587 1.22882 0.98317 0.98248 0.94980 1.21776 0.98507 0.83931 0.90488 0.93192 1.21449 0.95125 0.82062 0.96566 0.95378 1.21749 0.94918 1.00354 0.97932 1.21521 1.01263 0.98128 0.94622 1.21875 0.95237 0.95125 1.03607 1.22165 0.95648 1.03170 0.81618 1.48265 1.55271 1.13141 1.16193 1.20162 0.77581 0.86492 0.83860 1.90667 1.51408 1.77615 1.23158 1.21184 0.98044 0.89410 1.08374 1.21530 0.89248 1.05160 0.97152 1.21996 0.79623 1.01475 0.96334 1.92727 1.48993 1.94765 1.84738 1.23157 1.02480 0.97086 0.95236 1.23387 0.94461 1.00752 0.99120 0.93147 0.97585 0.97133 0.92313 0.89810 0.89117 0.91867 0.94559 0.91722 0.91216 0.93370 0.90761 0.87742 0.85904 0.91927 0.90339 0.86660 0.89334 0.93193 0.89601 0.85567 0.84439 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.15 13.07 21.65 0.28 -57.87 16 2 C -0.07 -3.86 5.19 84.86 0.44 -3.42 16 3 Si 1.11 53.48 29.98 68.60 2.06 55.54 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.34 -20.04 9.47 84.03 0.80 -19.25 16 8 H 0.03 2.09 7.94 -2.91 -0.02 2.07 16 9 N -0.61 -32.84 2.41 -667.82 -1.61 -34.44 16 10 C 0.15 7.43 5.77 86.93 0.50 7.93 16 11 C -0.13 -5.12 7.10 32.06 0.23 -4.89 16 12 C -0.11 -4.15 5.01 31.78 0.16 -3.99 16 13 C 0.16 7.23 2.28 45.34 0.10 7.34 16 14 H 0.05 2.61 5.76 -17.26 -0.10 2.51 16 15 C 0.15 6.14 2.68 44.97 0.12 6.26 16 16 H 0.03 1.35 7.88 -2.39 -0.02 1.34 16 17 C -0.11 -4.19 4.98 30.68 0.15 -4.03 16 18 C -0.12 -3.30 5.88 30.63 0.18 -3.12 16 19 C -0.12 -2.24 6.08 30.67 0.19 -2.06 16 20 C 0.10 1.92 5.74 86.37 0.50 2.42 16 21 N -0.60 -17.50 2.94 -795.02 -2.34 -19.85 16 22 C 0.53 15.16 5.60 87.66 0.49 15.65 16 23 O -0.55 -20.26 10.02 -3.03 -0.03 -20.29 16 24 C -0.17 -2.97 0.97 -52.92 -0.05 -3.02 16 25 C -0.09 -1.49 5.55 30.59 0.17 -1.32 16 26 C 0.06 1.32 7.29 71.98 0.52 1.85 16 27 F -0.23 -5.71 17.36 44.97 0.78 -4.93 16 28 C -0.14 -2.00 9.96 30.62 0.30 -1.70 16 29 C -0.14 -1.52 7.62 30.62 0.23 -1.29 16 30 H 0.26 16.18 5.43 -92.71 -0.50 15.68 16 31 H 0.01 0.34 6.78 -2.39 -0.02 0.33 16 32 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.09 3.42 5.69 -2.44 -0.01 3.41 16 36 H 0.06 2.31 5.34 -2.39 -0.01 2.30 16 37 H 0.04 1.74 6.95 -2.39 -0.02 1.72 16 38 H 0.06 2.32 5.62 -2.39 -0.01 2.31 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.12 1.64 4.63 -2.39 -0.01 1.63 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.29 8.14 -2.38 -0.02 1.28 16 46 H 0.12 1.17 8.11 -2.39 -0.02 1.15 16 47 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.05 1.39 7.59 -2.39 -0.02 1.37 16 49 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 50 H 0.13 1.20 8.14 -2.39 -0.02 1.19 16 51 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.10 1.21 7.21 -2.39 -0.02 1.20 16 Total: -1.00 -75.06 384.56 5.26 -69.80 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.09 Total: 18.69 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.04 Total: -6.65 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -3.66 Total: -112.16 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.03 Total: -20.29 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.78 Total: -4.93 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 2.06 Total: 55.54 kcal Total: -75.06 5.26 -69.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491280983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.701 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds