Wall clock time and date at job start Tue Mar 31 2020 21:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99945 * 2 1 4 4 H 1.48499 * 109.46965 * 240.00187 * 3 2 1 5 5 H 1.48500 * 109.46860 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46952 * 119.99977 * 3 2 1 7 7 C 1.38815 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00039 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.47432 * 125.64856 * 36.29236 * 9 7 2 11 11 C 1.54904 * 104.82914 * 204.09544 * 10 9 7 12 12 C 1.55153 * 101.58402 * 322.98943 * 11 10 9 13 13 C 1.47021 * 125.65163 * 216.25542 * 9 7 2 14 14 H 1.09002 * 109.87948 * 59.39936 * 13 9 7 15 15 C 1.53005 * 109.88030 * 298.39439 * 13 9 7 16 16 H 1.08992 * 109.69943 * 194.50300 * 15 13 9 17 17 C 1.53187 * 109.58472 * 314.85658 * 15 13 9 18 18 C 1.53038 * 109.31502 * 174.42155 * 17 15 13 19 19 C 1.53038 * 109.53889 * 298.64208 * 18 17 15 20 20 C 1.53180 * 109.31735 * 61.35673 * 19 18 17 21 21 N 1.46923 * 109.58469 * 74.14611 * 15 13 9 22 22 C 1.34775 * 120.63795 * 6.88273 * 21 15 13 23 23 O 1.21286 * 119.99503 * 354.04137 * 22 21 15 24 24 C 1.50695 * 120.00650 * 174.04863 * 22 21 15 25 25 C 1.53001 * 115.54790 * 304.44393 * 24 22 21 26 26 C 1.53001 * 109.46935 * 293.95658 * 25 24 22 27 27 F 1.39907 * 109.46827 * 180.61006 * 26 25 24 28 28 C 1.52999 * 117.50131 * 158.77142 * 24 22 21 29 29 C 1.52996 * 117.49988 * 90.10749 * 24 22 21 30 30 H 0.96995 * 120.00074 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.36703 * 322.93557 * 10 9 7 32 32 H 1.08997 * 110.36330 * 85.25623 * 10 9 7 33 33 H 1.09003 * 111.00671 * 81.07337 * 11 10 9 34 34 H 1.09009 * 110.99922 * 204.91654 * 11 10 9 35 35 H 1.08997 * 110.72343 * 277.13955 * 12 11 10 36 36 H 1.09005 * 110.71925 * 153.87235 * 12 11 10 37 37 H 1.09008 * 109.49815 * 54.47167 * 17 15 13 38 38 H 1.09007 * 109.52909 * 294.39373 * 17 15 13 39 39 H 1.09004 * 109.46386 * 178.61354 * 18 17 15 40 40 H 1.09004 * 109.44545 * 58.64688 * 18 17 15 41 41 H 1.09008 * 109.49651 * 301.40510 * 19 18 17 42 42 H 1.09002 * 109.52690 * 181.33131 * 19 18 17 43 43 H 1.09006 * 109.59096 * 185.57850 * 20 19 18 44 44 H 1.08999 * 109.70249 * 65.22686 * 20 19 18 45 45 H 1.09000 * 109.47225 * 53.95539 * 25 24 22 46 46 H 1.08997 * 109.47558 * 173.95697 * 25 24 22 47 47 H 1.08993 * 109.47190 * 300.60877 * 26 25 24 48 48 H 1.09001 * 109.47405 * 60.61320 * 26 25 24 49 49 H 1.08997 * 117.49566 * 0.02562 * 28 24 22 50 50 H 1.09002 * 117.49446 * 145.01919 * 28 24 22 51 51 H 1.08999 * 117.50323 * 214.97843 * 29 24 22 52 52 H 1.09000 * 117.49930 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 0.0595 -2.6493 -0.7092 11 6 -0.5932 -3.8219 0.0644 12 6 0.6465 -4.6761 0.4393 13 6 1.7318 -3.6120 0.7055 14 1 1.8071 -3.4153 1.7750 15 6 3.0801 -4.0984 0.1701 16 1 3.2578 -5.1225 0.4981 17 6 3.0748 -4.0432 -1.3608 18 6 4.4684 -4.3970 -1.8849 19 6 5.4841 -3.3757 -1.3681 20 6 5.5167 -3.4234 0.1626 21 7 4.1521 -3.2277 0.6711 22 6 3.8901 -2.2713 1.5838 23 8 2.7456 -2.0506 1.9192 24 6 5.0189 -1.4761 2.1875 25 6 6.1222 -2.2990 2.8555 26 6 5.5542 -3.0108 4.0850 27 9 6.5665 -3.7522 4.7038 28 6 4.6753 -0.1201 2.8073 29 6 5.4318 -0.1850 1.4781 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5823 -1.7689 -0.6761 32 1 0.2555 -2.9383 -1.7418 33 1 -1.1056 -3.4637 0.9573 34 1 -1.2742 -4.3818 -0.5767 35 1 0.9349 -5.3221 -0.3899 36 1 0.4532 -5.2629 1.3374 37 1 2.8075 -3.0382 -1.6876 38 1 2.3480 -4.7571 -1.7487 39 1 4.4610 -4.3825 -2.9748 40 1 4.7450 -5.3923 -1.5369 41 1 5.1943 -2.3770 -1.6949 42 1 6.4726 -3.6143 -1.7607 43 1 6.1641 -2.6314 0.5393 44 1 5.8941 -4.3914 0.4922 45 1 6.5013 -3.0387 2.1503 46 1 6.9339 -1.6387 3.1607 47 1 5.1653 -2.2717 4.7853 48 1 4.7498 -3.6794 3.7785 49 1 3.6327 0.1966 2.7788 50 1 5.2357 0.1858 3.6908 51 1 6.4894 0.0785 1.4877 52 1 4.8873 0.0891 0.5745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491280984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:30 Heat of formation + Delta-G solvation = -5.271912 kcal Electronic energy + Delta-G solvation = -33947.049583 eV Core-core repulsion = 29863.542985 eV Total energy + Delta-G solvation = -4083.506598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.56876 -41.94535 -39.41475 -37.92518 -37.37928 -34.38551 -33.58538 -32.47575 -31.89412 -30.93927 -28.71617 -26.61141 -25.96453 -25.26953 -23.85240 -23.43612 -23.06621 -21.80957 -21.09236 -20.89318 -19.32310 -18.58787 -17.83540 -17.31233 -16.92342 -16.73100 -16.55767 -16.04369 -15.92386 -15.69923 -15.54947 -15.32561 -15.13178 -14.76181 -14.56600 -14.24758 -13.91507 -13.79146 -13.62102 -13.42985 -13.19804 -13.08505 -12.85095 -12.82117 -12.55446 -12.50647 -12.31394 -12.24152 -12.06401 -11.89961 -11.79253 -11.69024 -11.55858 -11.52231 -11.41214 -11.24264 -11.15625 -11.09400 -10.91796 -10.30122 -9.53092 -9.09194 -8.14607 -7.50558 -5.09627 1.37656 1.42193 1.45277 1.95458 2.27308 2.58434 2.81318 3.47720 3.51601 3.70307 3.78276 3.81619 3.92684 4.02454 4.05618 4.10593 4.12945 4.17953 4.25359 4.29555 4.33588 4.41827 4.45358 4.54104 4.54683 4.63088 4.70433 4.73286 4.82050 4.92452 4.93931 4.95072 4.99157 5.05190 5.07106 5.12467 5.14635 5.19994 5.24339 5.26961 5.27927 5.34086 5.40101 5.62437 5.68770 5.76471 5.83262 6.05129 6.13043 6.65764 6.87565 7.34591 7.77494 8.02693 8.80323 9.42828 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.006719 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.709610 B = 4166.068135 C = 5239.155997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.072 4.072 3 Si 0.926 3.074 4 H -0.286 1.286 5 H -0.312 1.312 6 H -0.257 1.257 7 C -0.136 4.136 8 H 0.066 0.934 9 N -0.576 5.576 10 C 0.117 3.883 11 C -0.121 4.121 12 C -0.123 4.123 13 C 0.136 3.864 14 H 0.059 0.941 15 C 0.146 3.854 16 H 0.077 0.923 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.103 3.897 21 N -0.604 5.604 22 C 0.513 3.487 23 O -0.498 6.498 24 C -0.147 4.147 25 C -0.103 4.103 26 C 0.066 3.934 27 F -0.226 7.226 28 C -0.155 4.155 29 C -0.151 4.151 30 H 0.235 0.765 31 H 0.067 0.933 32 H -0.008 1.008 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.129 0.871 51 H 0.139 0.861 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.842 -10.186 1.852 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.263 4.263 3 Si 0.757 3.243 4 H -0.213 1.213 5 H -0.240 1.240 6 H -0.183 1.183 7 C -0.267 4.267 8 H 0.083 0.917 9 N -0.299 5.299 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.162 4.162 13 C 0.030 3.970 14 H 0.076 0.924 15 C 0.041 3.959 16 H 0.094 0.906 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.168 4.168 20 C -0.019 4.019 21 N -0.338 5.338 22 C 0.301 3.699 23 O -0.373 6.373 24 C -0.150 4.150 25 C -0.140 4.140 26 C 0.011 3.989 27 F -0.207 7.207 28 C -0.192 4.192 29 C -0.188 4.188 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.009 0.991 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.098 0.902 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.147 0.853 51 H 0.157 0.843 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.215 -9.868 2.072 18.253 hybrid contribution -0.601 1.544 -0.289 1.681 sum 14.615 -8.324 1.783 16.913 Atomic orbital electron populations 1.69808 1.06383 1.23693 1.59746 1.25860 0.95906 1.00212 1.04362 0.85970 0.78054 0.81545 0.78755 1.21275 1.23961 1.18282 1.18843 0.89828 0.82382 1.35643 0.91657 1.44282 1.24198 1.07773 1.53608 1.21863 0.90063 0.97396 0.91521 1.22593 0.97179 0.96893 0.99234 1.22675 0.95380 0.96932 1.01185 1.21901 0.91440 0.86228 0.97470 0.92351 1.21754 0.87864 0.92286 0.93997 0.90553 1.21764 0.97404 1.01381 0.95019 1.21483 0.93886 0.99291 1.00181 1.21877 1.00459 0.98964 0.95499 1.22037 0.82686 1.02992 0.94178 1.47832 1.09434 1.34518 1.42042 1.19611 0.88715 0.80653 0.80950 1.90886 1.21603 1.63840 1.60925 1.21333 0.98300 0.89918 1.05456 1.21829 0.95881 0.99818 0.96481 1.21902 0.87593 0.94552 0.94860 1.92736 1.63685 1.79525 1.84783 1.23013 1.01030 0.97273 0.97927 1.23107 1.02337 0.97554 0.95761 0.95562 0.91567 0.99076 0.94290 0.90547 0.90433 0.91007 0.93728 0.92100 0.91975 0.90398 0.94284 0.88369 0.88564 0.89712 0.88145 0.87715 0.90181 0.92017 0.91591 0.85313 0.84289 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 10.78 21.65 0.23 -59.59 16 2 C -0.07 -4.24 5.44 84.86 0.46 -3.78 16 3 Si 0.93 47.05 28.63 68.60 1.96 49.02 16 4 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 5 H -0.31 -16.57 7.11 99.48 0.71 -15.87 16 6 H -0.26 -12.19 6.44 99.48 0.64 -11.55 16 7 C -0.14 -7.44 5.91 84.04 0.50 -6.94 16 8 H 0.07 3.45 4.60 -2.91 -0.01 3.43 16 9 N -0.58 -29.02 1.80 -668.26 -1.20 -30.23 16 10 C 0.12 5.90 6.83 86.85 0.59 6.49 16 11 C -0.12 -4.94 7.08 31.98 0.23 -4.71 16 12 C -0.12 -4.37 6.33 31.78 0.20 -4.17 16 13 C 0.14 5.66 2.31 45.34 0.10 5.77 16 14 H 0.06 2.85 5.35 -51.58 -0.28 2.57 16 15 C 0.15 4.85 2.53 44.98 0.11 4.97 16 16 H 0.08 2.18 8.11 -2.39 -0.02 2.16 16 17 C -0.12 -3.78 4.94 30.67 0.15 -3.63 16 18 C -0.11 -2.61 5.88 30.62 0.18 -2.43 16 19 C -0.13 -2.89 6.08 30.67 0.19 -2.71 16 20 C 0.10 2.29 4.91 86.36 0.42 2.71 16 21 N -0.60 -18.95 2.58 -795.05 -2.05 -21.01 16 22 C 0.51 18.70 4.00 87.66 0.35 19.05 16 23 O -0.50 -23.65 9.14 -3.05 -0.03 -23.67 16 24 C -0.15 -4.12 0.85 -52.93 -0.04 -4.17 16 25 C -0.10 -2.04 5.05 30.60 0.15 -1.88 16 26 C 0.07 1.47 7.42 71.98 0.53 2.00 16 27 F -0.23 -5.34 17.36 44.97 0.78 -4.56 16 28 C -0.16 -4.74 9.73 30.62 0.30 -4.44 16 29 C -0.15 -4.20 9.67 30.62 0.30 -3.90 16 30 H 0.23 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.07 3.95 5.38 -2.39 -0.01 3.93 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.08 2.39 6.67 -2.39 -0.02 2.37 16 36 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.04 1.88 6.49 -2.38 -0.02 1.87 16 38 H 0.06 1.89 7.01 -2.38 -0.02 1.88 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 1.90 4.84 -2.38 -0.01 1.89 16 44 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 45 H 0.10 1.73 5.27 -2.39 -0.01 1.72 16 46 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 47 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.06 1.55 7.76 -2.39 -0.02 1.53 16 49 H 0.07 2.69 7.20 -2.39 -0.02 2.68 16 50 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 51 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 52 H 0.07 2.34 6.75 -2.39 -0.02 2.32 16 Total: -1.00 -73.27 375.44 5.01 -68.26 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.59 Total: 23.56 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 4.73 Total: -1.78 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -3.02 Total: -110.82 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.03 Total: -23.67 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.96 Total: 49.02 kcal Total: -73.27 5.01 -68.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491280984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.989 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds