Wall clock time and date at job start Tue Mar 31 2020 20:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00085 * 2 1 4 4 O 1.21275 * 120.00101 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99725 * 0.02562 * 3 2 1 6 6 N 1.46900 * 109.46894 * 179.97438 * 5 3 2 7 7 C 1.48533 * 110.99925 * 52.60242 * 6 5 3 8 8 C 1.54940 * 103.22632 * 159.72454 * 7 6 5 9 9 C 1.54599 * 102.92054 * 322.58073 * 8 7 6 10 10 C 1.47902 * 111.00226 * 169.99741 * 6 5 3 11 11 C 1.46497 * 120.00000 * 180.02562 * 2 1 3 12 12 H 1.08995 * 110.35172 * 182.14615 * 11 2 1 13 13 C 1.54602 * 110.30583 * 304.28485 * 11 2 1 14 14 C 1.54935 * 102.92042 * 140.87570 * 13 11 2 15 15 N 1.48532 * 103.22762 * 322.58216 * 14 13 11 16 16 C 1.46902 * 111.00121 * 159.71896 * 15 14 13 17 17 C 1.50706 * 109.46577 * 52.60620 * 16 15 14 18 18 O 1.21292 * 120.00254 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99762 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99962 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99996 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99667 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00253 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47118 * 90.00030 * 24 22 20 26 26 H 1.48499 * 109.47293 * 210.00034 * 24 22 20 27 27 H 1.48504 * 109.47104 * 330.00279 * 24 22 20 28 28 C 1.47904 * 105.81774 * 39.20877 * 15 14 13 29 29 H 1.08993 * 109.47631 * 270.00079 * 1 2 3 30 30 H 1.09008 * 109.46947 * 29.99855 * 1 2 3 31 31 H 1.08995 * 109.47453 * 149.99517 * 1 2 3 32 32 H 1.08991 * 109.47128 * 299.99654 * 5 3 2 33 33 H 1.09002 * 109.47351 * 60.00233 * 5 3 2 34 34 H 1.08999 * 110.66971 * 278.15358 * 7 6 5 35 35 H 1.08998 * 110.66709 * 41.28671 * 7 6 5 36 36 H 1.09000 * 110.72476 * 204.22970 * 8 7 6 37 37 H 1.09001 * 110.72690 * 80.94077 * 8 7 6 38 38 H 1.08994 * 110.31622 * 263.04542 * 9 8 7 39 39 H 1.09004 * 110.30582 * 140.87208 * 9 8 7 40 40 H 1.08999 * 109.91465 * 333.51071 * 10 6 5 41 41 H 1.09004 * 109.91166 * 94.60556 * 10 6 5 42 42 H 1.09008 * 110.71971 * 259.23300 * 13 11 2 43 43 H 1.08995 * 110.72723 * 22.33427 * 13 11 2 44 44 H 1.09001 * 110.66626 * 204.14988 * 14 13 11 45 45 H 1.09002 * 110.66990 * 81.01865 * 14 13 11 46 46 H 1.09000 * 109.46894 * 292.60853 * 16 15 14 47 47 H 1.09000 * 109.47263 * 172.60419 * 16 15 14 48 48 H 0.96999 * 120.00047 * 0.02562 * 19 17 16 49 49 H 0.96996 * 119.99717 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.91578 * 94.02228 * 28 15 14 51 51 H 1.08996 * 109.91639 * 215.31408 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 7 2.3399 3.5889 0.0011 7 6 3.3259 3.4467 -1.1006 8 6 3.8700 4.8866 -1.2775 9 6 2.6154 5.7606 -1.0492 10 6 1.6509 4.8755 -0.2382 11 6 2.1975 -1.2687 -0.0006 12 1 3.2714 -1.0864 0.0378 13 6 1.7584 -2.1423 1.1971 14 6 1.7258 -3.5683 0.5922 15 7 1.2063 -3.3432 -0.7810 16 6 1.5445 -4.4684 -1.6629 17 6 1.0936 -5.7581 -1.0269 18 8 0.5449 -5.7417 0.0547 19 7 1.3000 -6.9299 -1.6601 20 6 0.8903 -8.1032 -1.0813 21 1 0.4017 -8.0885 -0.1183 22 6 1.1036 -9.3112 -1.7339 23 7 1.6985 -9.3291 -2.9055 24 14 0.5447 -10.9099 -0.9458 25 1 -0.8463 -11.2111 -1.3698 26 1 1.4423 -12.0129 -1.3733 27 1 0.5936 -10.7766 0.5325 28 6 1.8393 -2.0921 -1.2516 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 0.7584 2.5303 -0.8891 33 1 0.7590 2.5299 0.8908 34 1 4.1271 2.7653 -0.8143 35 1 2.8369 3.1053 -2.0129 36 1 4.2617 5.0299 -2.2846 37 1 4.6334 5.1050 -0.5308 38 1 2.1658 6.0340 -2.0037 39 1 2.8753 6.6548 -0.4825 40 1 0.7357 4.7067 -0.8057 41 1 1.4150 5.3528 0.7130 42 1 2.4871 -2.0827 2.0055 43 1 0.7698 -1.8466 1.5483 44 1 1.0514 -4.2109 1.1581 45 1 2.7283 -3.9951 0.5591 46 1 2.6231 -4.4972 -1.8176 47 1 1.0430 -4.3415 -2.6223 48 1 1.7391 -6.9431 -2.5249 49 1 1.8477 -10.1725 -3.3608 50 1 2.7431 -2.3226 -1.8156 51 1 1.1410 -1.5346 -1.8757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494870091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:58 Heat of formation + Delta-G solvation = -36.237801 kcal Electronic energy + Delta-G solvation = -29743.178959 eV Core-core repulsion = 25678.249541 eV Total energy + Delta-G solvation = -4064.929418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.65355 -39.33802 -38.40904 -37.37365 -35.24409 -33.92189 -32.74142 -31.51126 -31.00309 -29.12873 -28.71005 -27.21797 -27.16935 -25.81579 -24.15934 -21.90137 -21.19582 -21.17445 -20.76400 -19.26758 -19.12501 -17.90953 -17.46617 -16.85659 -16.20270 -16.01384 -15.73033 -15.71380 -15.31948 -14.70058 -14.52353 -14.32528 -14.04112 -13.84726 -13.79833 -13.45264 -13.23067 -12.96871 -12.74391 -12.54426 -12.43979 -12.34446 -12.20474 -11.91573 -11.77847 -11.70244 -11.61576 -11.55879 -11.44615 -11.20186 -11.06106 -10.97166 -10.90655 -10.55539 -10.38926 -10.24670 -9.72612 -9.51587 -8.84364 -8.72231 -8.39012 -8.04855 -7.93117 -6.44664 -3.85654 2.41826 2.68447 3.15785 3.24854 3.30352 3.68994 3.86124 4.05117 4.17444 4.28268 4.33160 4.52118 4.60245 4.65586 4.77272 4.82851 4.95828 4.97445 4.99974 5.07637 5.18035 5.21247 5.24823 5.32913 5.34873 5.43884 5.43977 5.47131 5.52887 5.60889 5.69809 5.73218 5.77967 5.84617 5.85936 5.92963 5.99853 6.01353 6.22835 6.26433 6.41054 6.55042 6.58168 6.64998 7.14885 7.21336 7.27695 7.52507 8.01422 8.02781 8.58132 9.14744 9.50462 10.01824 10.72918 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.037424 B = 0.001808 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.004912 B =15480.937245 C =15765.416095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.604 5.604 3 C 0.514 3.486 4 O -0.528 6.528 5 C 0.030 3.970 6 N -0.503 5.503 7 C 0.031 3.969 8 C -0.126 4.126 9 C -0.131 4.131 10 C 0.034 3.966 11 C 0.132 3.868 12 H 0.105 0.895 13 C -0.134 4.134 14 C 0.039 3.961 15 N -0.493 5.493 16 C 0.036 3.964 17 C 0.442 3.558 18 O -0.581 6.581 19 N -0.561 5.561 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.023 3.977 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.038 0.962 46 H 0.050 0.950 47 H 0.089 0.911 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.050 0.950 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 26.721 1.474 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.338 5.338 3 C 0.302 3.698 4 O -0.405 6.405 5 C -0.102 4.102 6 N -0.228 5.228 7 C -0.096 4.096 8 C -0.165 4.165 9 C -0.170 4.170 10 C -0.094 4.094 11 C 0.028 3.972 12 H 0.123 0.877 13 C -0.173 4.173 14 C -0.088 4.088 15 N -0.218 5.218 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.466 6.466 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.106 4.106 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.139 0.861 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.226 0.774 49 H 0.082 0.918 50 H 0.068 0.932 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.015 26.579 2.572 26.703 hybrid contribution 0.257 -1.017 -1.213 1.604 sum 0.272 25.561 1.359 25.599 Atomic orbital electron populations 1.21855 0.79144 1.03775 1.02310 1.47895 1.07201 1.05468 1.73208 1.20471 0.88115 0.85122 0.76114 1.90627 1.13800 1.86801 1.49236 1.22264 0.95010 0.89790 1.03100 1.64689 1.13083 1.00375 1.44637 1.23530 0.96952 0.97653 0.91480 1.22533 0.97553 0.94620 1.01748 1.22396 0.96070 0.98641 0.99845 1.22934 0.95999 0.90424 1.00021 1.21999 0.97595 0.82325 0.95310 0.87733 1.22945 1.02201 0.95362 0.96820 1.23473 0.99660 0.95565 0.90106 1.64634 1.53922 1.00846 1.02404 1.22107 0.99045 0.91144 0.97283 1.19687 0.85629 0.84507 0.87418 1.90432 1.47455 1.86475 1.22255 1.41854 1.52504 1.04991 1.20358 1.19702 1.35777 0.82783 1.04678 0.87852 1.25275 0.97091 0.99692 0.95865 1.69612 1.42320 1.27954 1.14290 0.85849 0.78357 0.80607 0.79417 1.20378 1.20933 1.19416 1.23295 0.98288 0.92358 0.96638 0.92268 0.91476 0.89307 0.91765 0.87705 0.86948 0.94533 0.91158 0.90685 0.91569 0.90964 0.93764 0.90139 0.90964 0.90284 0.86067 0.94350 0.93248 0.89249 0.77444 0.91832 0.93205 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 8.83 59.85 0.53 1.11 16 2 N -0.60 -6.46 2.77 -172.39 -0.48 -6.94 16 3 C 0.51 5.93 7.39 -10.98 -0.08 5.85 16 4 O -0.53 -7.81 12.88 5.56 0.07 -7.74 16 5 C 0.03 0.26 4.07 -4.97 -0.02 0.24 16 6 N -0.50 -4.90 5.26 -231.89 -1.22 -6.12 16 7 C 0.03 0.31 5.30 -1.90 -0.01 0.30 16 8 C -0.13 -0.98 7.06 -24.87 -0.18 -1.16 16 9 C -0.13 -0.85 6.93 -25.37 -0.18 -1.03 16 10 C 0.03 0.24 6.70 -2.75 -0.02 0.23 16 11 C 0.13 1.64 3.39 -66.57 -0.23 1.41 16 12 H 0.10 1.44 6.97 -51.93 -0.36 1.08 16 13 C -0.13 -1.74 6.65 -24.87 -0.17 -1.91 16 14 C 0.04 0.64 5.30 -1.90 -0.01 0.63 16 15 N -0.49 -7.98 5.26 -231.89 -1.22 -9.20 16 16 C 0.04 0.63 5.52 -4.97 -0.03 0.61 16 17 C 0.44 10.18 7.49 -10.98 -0.08 10.10 16 18 O -0.58 -14.97 13.09 5.55 0.07 -14.90 16 19 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C 0.02 0.31 5.86 -2.76 -0.02 0.29 16 29 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 30 H 0.07 0.39 6.44 -51.92 -0.33 0.05 16 31 H 0.09 0.83 6.97 -51.93 -0.36 0.47 16 32 H 0.06 0.46 7.07 -51.93 -0.37 0.09 16 33 H 0.10 0.76 8.11 -51.93 -0.42 0.33 16 34 H 0.11 1.41 5.97 -51.93 -0.31 1.10 16 35 H 0.04 0.36 8.02 -51.93 -0.42 -0.05 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.04 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 43 H 0.08 0.98 6.84 -51.93 -0.36 0.63 16 44 H 0.12 2.37 5.97 -51.93 -0.31 2.06 16 45 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 46 H 0.05 0.81 7.81 -51.93 -0.41 0.41 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.05 0.65 7.57 -51.93 -0.39 0.25 16 51 H 0.08 0.99 7.11 -51.93 -0.37 0.62 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -31.64 392.80 -10.35 -41.99 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.42 Total: 10.04 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.72 Total: 8.79 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -2.25 Total: -59.92 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.14 Total: -22.64 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.64 -10.35 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494870091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.748 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds