Wall clock time and date at job start Tue Mar 31 2020 20:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00085 * 2 1 4 4 O 1.21275 * 120.00101 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99725 * 0.02562 * 3 2 1 6 6 N 1.46900 * 109.46894 * 179.97438 * 5 3 2 7 7 C 1.48533 * 110.99925 * 52.60242 * 6 5 3 8 8 C 1.54940 * 103.22632 * 159.72454 * 7 6 5 9 9 C 1.54599 * 102.92054 * 322.58073 * 8 7 6 10 10 C 1.47902 * 111.00226 * 169.99741 * 6 5 3 11 11 C 1.46497 * 120.00000 * 180.02562 * 2 1 3 12 12 H 1.08995 * 110.35172 * 182.14615 * 11 2 1 13 13 C 1.54602 * 110.30583 * 304.28485 * 11 2 1 14 14 C 1.54935 * 102.92042 * 140.87570 * 13 11 2 15 15 N 1.48532 * 103.22762 * 322.58216 * 14 13 11 16 16 C 1.46902 * 111.00121 * 159.71896 * 15 14 13 17 17 C 1.50706 * 109.46577 * 52.60620 * 16 15 14 18 18 O 1.21292 * 120.00254 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99762 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99962 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99996 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99667 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00253 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47118 * 90.00030 * 24 22 20 26 26 H 1.48499 * 109.47293 * 210.00034 * 24 22 20 27 27 H 1.48504 * 109.47104 * 330.00279 * 24 22 20 28 28 C 1.47904 * 105.81774 * 39.20877 * 15 14 13 29 29 H 1.08993 * 109.47631 * 270.00079 * 1 2 3 30 30 H 1.09008 * 109.46947 * 29.99855 * 1 2 3 31 31 H 1.08995 * 109.47453 * 149.99517 * 1 2 3 32 32 H 1.08991 * 109.47128 * 299.99654 * 5 3 2 33 33 H 1.09002 * 109.47351 * 60.00233 * 5 3 2 34 34 H 1.08999 * 110.66971 * 278.15358 * 7 6 5 35 35 H 1.08998 * 110.66709 * 41.28671 * 7 6 5 36 36 H 1.09000 * 110.72476 * 204.22970 * 8 7 6 37 37 H 1.09001 * 110.72690 * 80.94077 * 8 7 6 38 38 H 1.08994 * 110.31622 * 263.04542 * 9 8 7 39 39 H 1.09004 * 110.30582 * 140.87208 * 9 8 7 40 40 H 1.08999 * 109.91465 * 333.51071 * 10 6 5 41 41 H 1.09004 * 109.91166 * 94.60556 * 10 6 5 42 42 H 1.09008 * 110.71971 * 259.23300 * 13 11 2 43 43 H 1.08995 * 110.72723 * 22.33427 * 13 11 2 44 44 H 1.09001 * 110.66626 * 204.14988 * 14 13 11 45 45 H 1.09002 * 110.66990 * 81.01865 * 14 13 11 46 46 H 1.09000 * 109.46894 * 292.60853 * 16 15 14 47 47 H 1.09000 * 109.47263 * 172.60419 * 16 15 14 48 48 H 0.96999 * 120.00047 * 0.02562 * 19 17 16 49 49 H 0.96996 * 119.99717 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.91578 * 94.02228 * 28 15 14 51 51 H 1.08996 * 109.91639 * 215.31408 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 7 2.3399 3.5889 0.0011 7 6 3.3259 3.4467 -1.1006 8 6 3.8700 4.8866 -1.2775 9 6 2.6154 5.7606 -1.0492 10 6 1.6509 4.8755 -0.2382 11 6 2.1975 -1.2687 -0.0006 12 1 3.2714 -1.0864 0.0378 13 6 1.7584 -2.1423 1.1971 14 6 1.7258 -3.5683 0.5922 15 7 1.2063 -3.3432 -0.7810 16 6 1.5445 -4.4684 -1.6629 17 6 1.0936 -5.7581 -1.0269 18 8 0.5449 -5.7417 0.0547 19 7 1.3000 -6.9299 -1.6601 20 6 0.8903 -8.1032 -1.0813 21 1 0.4017 -8.0885 -0.1183 22 6 1.1036 -9.3112 -1.7339 23 7 1.6985 -9.3291 -2.9055 24 14 0.5447 -10.9099 -0.9458 25 1 -0.8463 -11.2111 -1.3698 26 1 1.4423 -12.0129 -1.3733 27 1 0.5936 -10.7766 0.5325 28 6 1.8393 -2.0921 -1.2516 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 0.7584 2.5303 -0.8891 33 1 0.7590 2.5299 0.8908 34 1 4.1271 2.7653 -0.8143 35 1 2.8369 3.1053 -2.0129 36 1 4.2617 5.0299 -2.2846 37 1 4.6334 5.1050 -0.5308 38 1 2.1658 6.0340 -2.0037 39 1 2.8753 6.6548 -0.4825 40 1 0.7357 4.7067 -0.8057 41 1 1.4150 5.3528 0.7130 42 1 2.4871 -2.0827 2.0055 43 1 0.7698 -1.8466 1.5483 44 1 1.0514 -4.2109 1.1581 45 1 2.7283 -3.9951 0.5591 46 1 2.6231 -4.4972 -1.8176 47 1 1.0430 -4.3415 -2.6223 48 1 1.7391 -6.9431 -2.5249 49 1 1.8477 -10.1725 -3.3608 50 1 2.7431 -2.3226 -1.8156 51 1 1.1410 -1.5346 -1.8757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494870091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:57 Heat of formation + Delta-G solvation = -60.460906 kcal Electronic energy + Delta-G solvation = -29744.229352 eV Core-core repulsion = 25678.249541 eV Total energy + Delta-G solvation = -4065.979811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57147 -40.61746 -39.55018 -38.60950 -36.36570 -35.79980 -33.53181 -33.29317 -32.32948 -29.83574 -29.70642 -28.53271 -27.91920 -26.98091 -25.82705 -22.69458 -22.50758 -21.78253 -21.60113 -21.05507 -20.02751 -19.87156 -18.37654 -17.72915 -17.63663 -17.02307 -16.74900 -16.60232 -16.44520 -16.32579 -16.00005 -15.58240 -15.39336 -14.97021 -14.81818 -14.41691 -14.26277 -14.03261 -13.89444 -13.60341 -13.44165 -13.35090 -13.14219 -13.01922 -12.98802 -12.98533 -12.74186 -12.63350 -12.46168 -12.42079 -12.28630 -12.18794 -12.13166 -11.85277 -11.74623 -11.45959 -11.44720 -10.60712 -10.22115 -10.01555 -9.66237 -9.38706 -9.37860 -8.47222 -5.95828 1.37580 1.41677 1.54166 1.56607 1.85559 2.03036 2.28067 2.81566 3.05342 3.19718 3.29826 3.43199 3.65519 3.75117 3.77001 3.94220 4.06654 4.08773 4.21604 4.22821 4.27908 4.33828 4.34972 4.39480 4.43393 4.46418 4.52514 4.63780 4.65796 4.72473 4.75887 4.78637 4.91941 4.95627 5.00296 5.01482 5.09137 5.13784 5.23672 5.24396 5.31722 5.41042 5.53045 5.81356 5.87487 5.89524 5.97197 6.06642 6.41209 6.59447 7.12084 7.16260 7.54553 8.09916 8.70160 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.037424 B = 0.001808 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.004912 B =15480.937245 C =15765.416095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.602 5.602 3 C 0.509 3.491 4 O -0.567 6.567 5 C 0.035 3.965 6 N -0.525 5.525 7 C 0.033 3.967 8 C -0.126 4.126 9 C -0.128 4.128 10 C 0.033 3.967 11 C 0.139 3.861 12 H 0.091 0.909 13 C -0.121 4.121 14 C 0.041 3.959 15 N -0.501 5.501 16 C 0.046 3.954 17 C 0.440 3.560 18 O -0.611 6.611 19 N -0.573 5.573 20 C -0.332 4.332 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.273 1.273 28 C 0.030 3.970 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.026 0.974 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.054 0.946 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 28.546 0.929 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.335 5.335 3 C 0.298 3.702 4 O -0.446 6.446 5 C -0.096 4.096 6 N -0.250 5.250 7 C -0.095 4.095 8 C -0.164 4.164 9 C -0.166 4.166 10 C -0.094 4.094 11 C 0.034 3.966 12 H 0.109 0.891 13 C -0.160 4.160 14 C -0.087 4.087 15 N -0.226 5.226 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.497 6.497 19 N -0.210 5.210 20 C -0.461 4.461 21 H 0.099 0.901 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.099 4.099 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.110 28.430 2.013 28.522 hybrid contribution 0.603 -1.529 -1.013 1.931 sum -0.507 26.900 1.000 26.924 Atomic orbital electron populations 1.22036 0.77250 1.04673 1.03317 1.47940 1.08239 1.04559 1.72715 1.21070 0.87841 0.86103 0.75162 1.90631 1.15647 1.87368 1.50976 1.22312 0.94643 0.87706 1.04952 1.64652 1.13920 1.01679 1.44773 1.23365 0.96438 0.98225 0.91432 1.22521 0.98111 0.93654 1.02085 1.22408 0.95109 0.98489 1.00567 1.23007 0.96424 0.89232 1.00745 1.21741 0.97139 0.83158 0.94577 0.89120 1.22819 1.02936 0.93134 0.97070 1.23267 0.97919 0.97053 0.90440 1.64627 1.54593 1.01326 1.02024 1.22012 1.00020 0.88770 0.97700 1.20635 0.84057 0.85668 0.86845 1.90432 1.48390 1.87261 1.23662 1.41925 1.53234 1.05150 1.20657 1.19672 1.37359 0.84491 1.04595 0.90083 1.26049 0.96735 1.02287 0.96275 1.69675 1.42534 1.28989 1.14979 0.84919 0.78298 0.76829 0.78238 1.19609 1.19701 1.19732 1.23297 0.98633 0.90890 0.97032 0.91229 0.88548 0.90431 0.89532 0.85806 0.90142 0.94701 0.90204 0.91505 0.90331 0.90090 0.92286 0.89537 0.90341 0.89444 0.89515 0.95515 0.91659 0.87118 0.77092 0.91337 0.92795 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 8.83 127.77 1.13 2.05 16 2 N -0.60 -11.78 2.77 -817.70 -2.27 -14.05 16 3 C 0.51 11.03 7.39 87.66 0.65 11.68 16 4 O -0.57 -16.83 12.88 -3.01 -0.04 -16.87 16 5 C 0.03 0.51 4.07 85.56 0.35 0.86 16 6 N -0.52 -9.31 5.26 -887.56 -4.67 -13.98 16 7 C 0.03 0.64 5.30 86.65 0.46 1.10 16 8 C -0.13 -1.82 7.06 31.80 0.22 -1.59 16 9 C -0.13 -1.34 6.93 31.47 0.22 -1.13 16 10 C 0.03 0.39 6.70 86.45 0.58 0.96 16 11 C 0.14 3.32 3.39 45.87 0.16 3.48 16 12 H 0.09 2.48 6.97 -2.39 -0.02 2.47 16 13 C -0.12 -3.07 6.65 31.80 0.21 -2.86 16 14 C 0.04 1.37 5.30 86.65 0.46 1.83 16 15 N -0.50 -15.86 5.26 -887.57 -4.67 -20.53 16 16 C 0.05 1.61 5.52 85.56 0.47 2.08 16 17 C 0.44 20.65 7.49 87.66 0.66 21.31 16 18 O -0.61 -32.50 13.09 -3.07 -0.04 -32.54 16 19 N -0.57 -29.21 5.29 -306.98 -1.62 -30.84 16 20 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 24 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.03 0.74 5.86 86.44 0.51 1.25 16 29 H 0.07 0.82 7.87 -2.39 -0.02 0.80 16 30 H 0.10 0.74 6.44 -2.38 -0.02 0.72 16 31 H 0.08 1.27 6.97 -2.39 -0.02 1.25 16 32 H 0.09 0.90 7.07 -2.39 -0.02 0.88 16 33 H 0.12 1.36 8.11 -2.39 -0.02 1.34 16 34 H 0.08 2.09 5.97 -2.39 -0.01 2.08 16 35 H 0.03 0.66 8.02 -2.39 -0.02 0.64 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.06 0.52 7.57 -2.39 -0.02 0.50 16 41 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.09 2.08 6.84 -2.39 -0.02 2.06 16 44 H 0.09 3.53 5.97 -2.39 -0.01 3.52 16 45 H 0.03 0.93 8.02 -2.39 -0.02 0.91 16 46 H 0.07 2.08 7.81 -2.39 -0.02 2.07 16 47 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 48 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 49 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 50 H 0.05 1.32 7.57 -2.39 -0.02 1.30 16 51 H 0.10 2.11 7.11 -2.39 -0.02 2.10 16 Total: -1.00 -70.42 392.80 -3.45 -73.87 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.20 Total: 36.62 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 7.35 Total: 22.90 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -12.94 Total: -128.77 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.08 Total: -49.41 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -70.42 -3.45 -73.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494870091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.408 kcal (2) G-P(sol) polarization free energy of solvation -70.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds